Wall clock time and date at job start Tue Mar 31 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99330 * 2 1 4 4 C 1.53005 * 109.46765 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47175 * 64.99989 * 4 3 2 6 6 C 1.37099 * 120.00200 * 264.55165 * 5 4 3 7 7 H 1.08005 * 120.00407 * 145.64647 * 6 5 4 8 8 C 1.38950 * 120.00089 * 325.64895 * 6 5 4 9 9 N 1.31414 * 119.99895 * 338.16097 * 8 6 5 10 10 Si 1.86795 * 120.00188 * 158.15851 * 8 6 5 11 11 H 1.48500 * 109.47385 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47419 * 120.00285 * 10 8 6 13 13 H 1.48501 * 109.47414 * 240.00178 * 10 8 6 14 14 C 1.34774 * 120.00058 * 84.55183 * 5 4 3 15 15 O 1.21287 * 120.00200 * 359.97438 * 14 5 4 16 16 C 1.50703 * 120.00053 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.47101 * 180.02562 * 16 14 5 18 18 C 1.50702 * 109.47354 * 180.02562 * 17 16 14 19 19 C 1.38217 * 120.01680 * 99.99784 * 18 17 16 20 20 C 1.38215 * 120.02657 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05413 * 0.02562 * 20 19 18 22 22 C 1.38175 * 120.02075 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.00870 * 279.72546 * 18 17 16 24 24 F 1.35107 * 120.02638 * 359.97438 * 23 18 17 25 25 H 1.08997 * 109.47272 * 299.99725 * 1 2 3 26 26 H 1.08998 * 109.47471 * 59.99998 * 1 2 3 27 27 H 1.09003 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46968 * 60.00560 * 3 2 1 29 29 H 1.08997 * 109.47121 * 299.99542 * 3 2 1 30 30 H 1.09004 * 109.46944 * 305.00216 * 4 3 2 31 31 H 1.08999 * 109.47317 * 185.00007 * 4 3 2 32 32 H 0.97000 * 119.99963 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46924 * 60.00570 * 16 14 5 34 34 H 1.08992 * 109.47306 * 300.00120 * 16 14 5 35 35 H 1.09002 * 109.47209 * 60.00086 * 17 16 14 36 36 H 1.09006 * 109.47166 * 299.99972 * 17 16 14 37 37 H 1.08000 * 119.98578 * 359.97438 * 19 18 17 38 38 H 1.08006 * 119.97782 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.99080 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.01276 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.2045 -0.7861 -1.3053 7 1 3.9849 -1.3364 -2.2083 8 6 4.7191 -1.4472 -0.1967 9 7 5.3777 -0.7762 0.7214 10 14 4.4745 -3.2898 -0.0113 11 1 3.7057 -3.8064 -1.1721 12 1 5.7976 -3.9617 0.0441 13 1 3.7262 -3.5663 1.2412 14 6 4.1556 1.3219 -2.3530 15 8 3.9527 2.5167 -2.3067 16 6 4.6091 0.6839 -3.6408 17 6 4.7350 1.7566 -4.7246 18 6 5.1878 1.1186 -6.0126 19 6 4.2677 0.8334 -7.0038 20 6 4.6829 0.2488 -8.1854 21 6 6.0188 -0.0519 -8.3773 22 6 6.9404 0.2323 -7.3878 23 6 6.5265 0.8232 -6.2058 24 9 7.4276 1.1071 -5.2400 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.7366 -1.2376 1.4954 33 1 3.8798 -0.0638 -3.9523 34 1 5.5769 0.2064 -3.4887 35 1 5.4645 2.5041 -4.4129 36 1 3.7673 2.2346 -4.8769 37 1 3.2240 1.0674 -6.8549 38 1 3.9632 0.0259 -8.9593 39 1 6.3420 -0.5091 -9.3008 40 1 7.9838 -0.0030 -7.5376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:11 Heat of formation + Delta-G solvation = -103.423370 kcal Electronic energy + Delta-G solvation = -23898.562351 eV Core-core repulsion = 20207.005260 eV Total energy + Delta-G solvation = -3691.557091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.63451 -39.12697 -38.50967 -36.94548 -34.75663 -33.57160 -31.52215 -30.53653 -29.90490 -28.56181 -25.83440 -24.86197 -24.10128 -22.66446 -21.85056 -20.68878 -18.94853 -17.40347 -16.85903 -16.30470 -16.22981 -15.60906 -15.38359 -15.31161 -15.14605 -14.47907 -14.33076 -14.22089 -14.02259 -13.80934 -13.18657 -13.03035 -12.66719 -12.37008 -12.25574 -11.97577 -11.54247 -11.47425 -11.30544 -11.16681 -11.01426 -10.95395 -10.79185 -10.54889 -10.30231 -10.27237 -9.97450 -9.11601 -8.94618 -8.88354 -8.56685 -8.29486 -7.47213 -6.29364 -3.92740 1.24600 1.27542 3.19365 3.30182 3.34288 3.65259 3.95110 4.20976 4.41782 4.53052 4.70229 4.82567 4.91313 5.05600 5.17181 5.27844 5.41370 5.67573 5.72460 5.74131 5.81493 5.89507 5.99429 6.03515 6.09874 6.12191 6.21590 6.27907 6.34153 6.40024 6.44581 6.52264 6.72639 6.76771 6.83408 6.99950 7.33227 7.54007 7.84525 8.03483 8.43871 9.17543 9.58228 9.99812 10.73676 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.004623 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.611576 B = 6055.012963 C = 6690.435197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.322 4.322 7 H 0.088 0.912 8 C 0.047 3.953 9 N -0.863 5.863 10 Si 0.914 3.086 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.280 1.280 14 C 0.466 3.534 15 O -0.614 6.614 16 C -0.110 4.110 17 C -0.064 4.064 18 C -0.103 4.103 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.155 4.155 23 C 0.102 3.898 24 F -0.134 7.134 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.268 0.732 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 0.087 -11.604 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.450 4.450 7 H 0.106 0.894 8 C -0.158 4.158 9 N -0.500 5.500 10 Si 0.741 3.259 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.256 3.744 15 O -0.501 6.501 16 C -0.150 4.150 17 C -0.102 4.102 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.150 4.150 21 C -0.122 4.122 22 C -0.174 4.174 23 C 0.082 3.918 24 F -0.112 7.112 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.731 0.454 -11.322 11.656 hybrid contribution -0.187 -0.814 0.411 0.931 sum -2.918 -0.361 -10.911 11.301 Atomic orbital electron populations 1.22641 0.83503 1.01687 0.98814 1.88135 1.17313 1.27841 1.95035 1.23040 0.96665 0.84214 0.98585 1.21476 0.89076 0.99068 0.91494 1.43357 1.56143 1.07363 1.07659 1.19336 1.42035 0.82070 1.01514 0.89448 1.25223 0.94058 0.99853 0.96652 1.69920 1.31298 1.37009 1.11821 0.86085 0.77825 0.83254 0.78690 1.19298 1.21135 1.20535 1.20347 0.81191 0.86296 0.86588 1.90500 1.58059 1.15402 1.86184 1.21279 1.03230 0.97771 0.92723 1.20336 1.02629 0.97622 0.89632 1.20224 0.91717 1.00466 0.98027 1.21004 0.99452 0.97864 0.92571 1.21160 0.95996 1.00088 0.97762 1.20922 0.92980 0.99729 0.98568 1.21125 1.01041 1.02001 0.93255 1.17643 0.86695 1.00594 0.86844 1.91526 1.66509 1.91268 1.61912 0.95182 0.95020 0.90465 0.94368 0.94097 0.86595 0.91351 0.92226 0.90378 0.89516 0.90263 0.90351 0.85101 0.85665 0.85477 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.90 10.44 -35.23 -0.37 -8.27 16 3 C 0.05 1.12 6.24 37.16 0.23 1.35 16 4 C 0.11 2.76 5.29 -4.04 -0.02 2.73 16 5 N -0.43 -10.98 2.51 -114.81 -0.29 -11.26 16 6 C -0.32 -8.36 8.48 -14.93 -0.13 -8.49 16 7 H 0.09 2.21 6.98 -52.48 -0.37 1.84 16 8 C 0.05 1.23 4.93 -17.47 -0.09 1.14 16 9 N -0.86 -23.28 11.34 55.50 0.63 -22.65 16 10 Si 0.91 20.41 29.61 -169.99 -5.03 15.37 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 14 C 0.47 11.48 7.60 -10.99 -0.08 11.40 16 15 O -0.61 -16.08 15.65 5.55 0.09 -15.99 16 16 C -0.11 -2.27 4.34 -27.88 -0.12 -2.39 16 17 C -0.06 -1.15 4.36 -27.88 -0.12 -1.27 16 18 C -0.10 -1.59 5.14 -104.56 -0.54 -2.12 16 19 C -0.09 -1.15 9.67 -39.60 -0.38 -1.54 16 20 C -0.13 -1.42 10.04 -39.58 -0.40 -1.81 16 21 C -0.10 -1.10 10.04 -39.59 -0.40 -1.50 16 22 C -0.16 -1.93 10.03 -39.52 -0.40 -2.33 16 23 C 0.10 1.56 7.24 -39.42 -0.29 1.28 16 24 F -0.13 -2.32 16.66 2.25 0.04 -2.28 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 3.03 5.37 -51.93 -0.28 2.76 16 31 H 0.07 1.68 7.59 -51.93 -0.39 1.29 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 34 H 0.09 1.87 8.10 -51.93 -0.42 1.45 16 35 H 0.08 1.52 7.90 -51.93 -0.41 1.11 16 36 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 37 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -30.53 344.71 -6.97 -37.50 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.62 Total: 4.33 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.61 Total: -1.94 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.34 Total: -33.92 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.28 Total: -24.26 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.53 -6.97 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.922 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds