Wall clock time and date at job start Tue Mar 31 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99330 * 2 1 4 4 C 1.53005 * 109.46765 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47175 * 64.99989 * 4 3 2 6 6 C 1.37099 * 120.00200 * 264.55165 * 5 4 3 7 7 H 1.08005 * 120.00407 * 145.64647 * 6 5 4 8 8 C 1.38950 * 120.00089 * 325.64895 * 6 5 4 9 9 N 1.31414 * 119.99895 * 338.16097 * 8 6 5 10 10 Si 1.86795 * 120.00188 * 158.15851 * 8 6 5 11 11 H 1.48500 * 109.47385 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47419 * 120.00285 * 10 8 6 13 13 H 1.48501 * 109.47414 * 240.00178 * 10 8 6 14 14 C 1.34774 * 120.00058 * 84.55183 * 5 4 3 15 15 O 1.21287 * 120.00200 * 359.97438 * 14 5 4 16 16 C 1.50703 * 120.00053 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.47101 * 180.02562 * 16 14 5 18 18 C 1.50702 * 109.47354 * 180.02562 * 17 16 14 19 19 C 1.38217 * 120.01680 * 99.99784 * 18 17 16 20 20 C 1.38215 * 120.02657 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05413 * 0.02562 * 20 19 18 22 22 C 1.38175 * 120.02075 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.00870 * 279.72546 * 18 17 16 24 24 F 1.35107 * 120.02638 * 359.97438 * 23 18 17 25 25 H 1.08997 * 109.47272 * 299.99725 * 1 2 3 26 26 H 1.08998 * 109.47471 * 59.99998 * 1 2 3 27 27 H 1.09003 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46968 * 60.00560 * 3 2 1 29 29 H 1.08997 * 109.47121 * 299.99542 * 3 2 1 30 30 H 1.09004 * 109.46944 * 305.00216 * 4 3 2 31 31 H 1.08999 * 109.47317 * 185.00007 * 4 3 2 32 32 H 0.97000 * 119.99963 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46924 * 60.00570 * 16 14 5 34 34 H 1.08992 * 109.47306 * 300.00120 * 16 14 5 35 35 H 1.09002 * 109.47209 * 60.00086 * 17 16 14 36 36 H 1.09006 * 109.47166 * 299.99972 * 17 16 14 37 37 H 1.08000 * 119.98578 * 359.97438 * 19 18 17 38 38 H 1.08006 * 119.97782 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.99080 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.01276 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.2045 -0.7861 -1.3053 7 1 3.9849 -1.3364 -2.2083 8 6 4.7191 -1.4472 -0.1967 9 7 5.3777 -0.7762 0.7214 10 14 4.4745 -3.2898 -0.0113 11 1 3.7057 -3.8064 -1.1721 12 1 5.7976 -3.9617 0.0441 13 1 3.7262 -3.5663 1.2412 14 6 4.1556 1.3219 -2.3530 15 8 3.9527 2.5167 -2.3067 16 6 4.6091 0.6839 -3.6408 17 6 4.7350 1.7566 -4.7246 18 6 5.1878 1.1186 -6.0126 19 6 4.2677 0.8334 -7.0038 20 6 4.6829 0.2488 -8.1854 21 6 6.0188 -0.0519 -8.3773 22 6 6.9404 0.2323 -7.3878 23 6 6.5265 0.8232 -6.2058 24 9 7.4276 1.1071 -5.2400 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.7366 -1.2376 1.4954 33 1 3.8798 -0.0638 -3.9523 34 1 5.5769 0.2064 -3.4887 35 1 5.4645 2.5041 -4.4129 36 1 3.7673 2.2346 -4.8769 37 1 3.2240 1.0674 -6.8549 38 1 3.9632 0.0259 -8.9593 39 1 6.3420 -0.5091 -9.3008 40 1 7.9838 -0.0030 -7.5376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:10 Heat of formation + Delta-G solvation = -120.505489 kcal Electronic energy + Delta-G solvation = -23899.303087 eV Core-core repulsion = 20207.005260 eV Total energy + Delta-G solvation = -3692.297827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85268 -40.69206 -39.86169 -38.57375 -36.66343 -34.96317 -33.51624 -31.66785 -31.31906 -30.01982 -27.29655 -26.71170 -25.61256 -23.66041 -23.43918 -21.99075 -20.90328 -18.73267 -18.48671 -17.95084 -17.47568 -17.13594 -16.98102 -16.61329 -16.45310 -16.19446 -16.06095 -15.89431 -15.41646 -15.05474 -14.65701 -14.30255 -14.00920 -13.79011 -13.70054 -13.49302 -13.21989 -12.95919 -12.92553 -12.71004 -12.54617 -12.48513 -12.40544 -12.04442 -11.92705 -11.78492 -11.77470 -11.02928 -10.55970 -10.36091 -9.84431 -9.53765 -9.47700 -8.27404 -5.96830 0.24468 0.31735 1.41117 1.48396 1.60136 2.01376 2.34726 2.67614 2.93820 3.01486 3.19300 3.39725 3.75563 3.83401 4.09734 4.23269 4.26850 4.27639 4.30451 4.45629 4.49313 4.50924 4.53833 4.60279 4.62298 4.71705 4.81313 4.89726 4.98503 5.03082 5.15607 5.20953 5.32340 5.35844 5.48690 5.52551 5.53900 5.98981 6.02638 6.40223 6.43616 7.16793 7.60835 8.02235 8.76505 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.004623 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.611576 B = 6055.012963 C = 6690.435197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.066 3.934 4 C 0.109 3.891 5 N -0.439 5.439 6 C -0.334 4.334 7 H 0.092 0.908 8 C 0.006 3.994 9 N -0.895 5.895 10 Si 0.979 3.021 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.452 3.548 15 O -0.636 6.636 16 C -0.097 4.097 17 C -0.052 4.052 18 C -0.126 4.126 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.157 4.157 23 C 0.067 3.933 24 F -0.157 7.157 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.270 0.730 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -1.707 -13.892 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.156 5.156 6 C -0.462 4.462 7 H 0.110 0.890 8 C -0.196 4.196 9 N -0.533 5.533 10 Si 0.803 3.197 11 H -0.183 1.183 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.242 3.758 15 O -0.526 6.526 16 C -0.137 4.137 17 C -0.089 4.089 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.139 4.139 21 C -0.110 4.110 22 C -0.176 4.176 23 C 0.048 3.952 24 F -0.136 7.136 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.066 -1.340 -13.618 14.275 hybrid contribution 0.201 -0.236 1.066 1.111 sum -3.865 -1.576 -12.552 13.228 Atomic orbital electron populations 1.22899 0.80587 1.03405 1.00281 1.88062 1.20523 1.27724 1.95312 1.22782 0.94326 0.84632 0.99431 1.21434 0.91610 0.97691 0.90725 1.43598 1.56210 1.07610 1.08139 1.19575 1.42296 0.82313 1.02014 0.89037 1.26029 0.93466 1.03937 0.96157 1.70017 1.32113 1.38760 1.12401 0.85109 0.77780 0.78114 0.78715 1.18260 1.20747 1.20492 1.21057 0.80768 0.86231 0.87698 1.90464 1.59001 1.16361 1.86763 1.21180 1.02282 0.98526 0.91686 1.20108 1.02050 0.96355 0.90432 1.20068 0.92494 1.02488 0.97670 1.21248 0.99663 0.97700 0.92685 1.21608 0.96919 0.98002 0.97412 1.21427 0.92510 0.97968 0.99079 1.21426 1.02585 1.01177 0.92419 1.18076 0.86601 1.02711 0.87817 1.91459 1.67244 1.91791 1.63104 0.93036 0.94144 0.88692 0.91606 0.94942 0.88360 0.92794 0.92017 0.89215 0.91011 0.92810 0.90101 0.83721 0.81973 0.81584 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.91 10.44 -148.98 -1.56 -18.47 16 3 C 0.07 2.81 6.24 71.98 0.45 3.26 16 4 C 0.11 5.52 5.29 86.38 0.46 5.98 16 5 N -0.44 -23.17 2.51 -635.53 -1.60 -24.77 16 6 C -0.33 -17.64 8.48 84.04 0.71 -16.93 16 7 H 0.09 4.64 6.98 -2.91 -0.02 4.62 16 8 C 0.01 0.33 4.93 84.93 0.42 0.75 16 9 N -0.89 -49.33 11.34 21.66 0.25 -49.08 16 10 Si 0.98 41.69 29.61 68.60 2.03 43.72 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 14 C 0.45 23.11 7.60 87.66 0.67 23.77 16 15 O -0.64 -34.72 15.65 -3.05 -0.05 -34.77 16 16 C -0.10 -4.14 4.34 29.85 0.13 -4.01 16 17 C -0.05 -1.92 4.36 29.85 0.13 -1.79 16 18 C -0.13 -3.88 5.14 -19.82 -0.10 -3.98 16 19 C -0.10 -2.22 9.67 22.26 0.22 -2.00 16 20 C -0.12 -2.12 10.04 22.27 0.22 -1.89 16 21 C -0.09 -1.57 10.04 22.26 0.22 -1.35 16 22 C -0.16 -3.62 10.03 22.31 0.22 -3.39 16 23 C 0.07 2.07 7.24 22.37 0.16 2.24 16 24 F -0.16 -5.77 16.66 44.97 0.75 -5.02 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 5.33 5.37 -2.39 -0.01 5.31 16 31 H 0.05 2.79 7.59 -2.39 -0.02 2.77 16 32 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.09 3.56 7.65 -2.39 -0.02 3.54 16 34 H 0.07 3.26 8.10 -2.39 -0.02 3.24 16 35 H 0.05 2.22 7.90 -2.39 -0.02 2.20 16 36 H 0.08 2.88 7.96 -2.38 -0.02 2.86 16 37 H 0.15 2.89 8.04 -2.91 -0.02 2.86 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -68.41 344.71 6.02 -62.39 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 1.03 Total: 23.34 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.16 Total: 2.64 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.35 Total: -73.85 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -1.60 Total: -53.23 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.75 Total: -5.02 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -68.41 6.02 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.111 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds