Wall clock time and date at job start Tue Mar 31 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 117.00117 * 2 1 4 4 C 1.38722 * 120.02805 * 0.02562 * 3 2 1 5 5 C 1.38138 * 119.96574 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.02989 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.96985 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.06307 * 359.79011 * 6 5 4 9 9 C 1.38174 * 120.02858 * 0.46263 * 8 6 5 10 10 C 1.50697 * 120.01436 * 179.79193 * 9 8 6 11 11 N 1.46892 * 109.47241 * 254.56582 * 10 9 8 12 12 C 1.47909 * 110.99909 * 65.40111 * 11 10 9 13 13 C 1.53992 * 107.05710 * 145.84663 * 12 11 10 14 14 C 1.54600 * 105.14146 * 358.77186 * 13 12 11 15 15 O 1.42905 * 110.71842 * 96.40348 * 14 13 12 16 16 C 1.50702 * 110.72468 * 219.68631 * 14 13 12 17 17 H 1.07996 * 119.99679 * 116.88110 * 16 14 13 18 18 C 1.37871 * 119.99833 * 296.87773 * 16 14 13 19 19 N 1.31516 * 120.00246 * 4.28411 * 18 16 14 20 20 Si 1.86800 * 119.99784 * 184.27792 * 18 16 14 21 21 H 1.48505 * 109.47131 * 94.97047 * 20 18 16 22 22 H 1.48495 * 109.47489 * 214.96640 * 20 18 16 23 23 H 1.48499 * 109.47362 * 334.96997 * 20 18 16 24 24 C 1.48530 * 111.00171 * 182.79603 * 11 10 9 25 25 H 1.08997 * 109.46740 * 299.99898 * 1 2 3 26 26 H 1.09005 * 109.46876 * 59.99498 * 1 2 3 27 27 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.01885 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.97991 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.98896 * 180.23800 * 8 6 5 31 31 H 1.09004 * 109.47075 * 134.56825 * 10 9 8 32 32 H 1.08999 * 109.46992 * 14.56938 * 10 9 8 33 33 H 1.08997 * 109.91241 * 26.49067 * 12 11 10 34 34 H 1.08995 * 110.08160 * 265.28774 * 12 11 10 35 35 H 1.08998 * 110.31176 * 117.69185 * 13 12 11 36 36 H 1.09001 * 110.30603 * 239.85841 * 13 12 11 37 37 H 0.96693 * 114.00160 * 55.43671 * 15 14 13 38 38 H 0.97004 * 119.99875 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.66780 * 318.71805 * 24 11 10 40 40 H 1.09002 * 110.66557 * 81.68202 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9198 3.6052 0.0011 6 6 3.3026 3.6769 0.0016 7 9 3.9160 4.8806 0.0027 8 6 4.0572 2.5163 0.0060 9 6 3.4312 1.2845 0.0002 10 6 4.2529 0.0213 0.0002 11 7 4.2165 -0.5867 -1.3365 12 6 4.8817 0.2817 -2.3320 13 6 5.5617 -0.6448 -3.3569 14 6 5.2669 -2.0795 -2.8622 15 8 4.1315 -2.6240 -3.5380 16 6 6.4729 -2.9647 -3.0443 17 1 6.9584 -3.3996 -2.1832 18 6 6.9564 -3.2193 -4.3101 19 7 6.4182 -2.6236 -5.3518 20 14 8.3759 -4.4105 -4.5456 21 1 7.8426 -5.7599 -4.8618 22 1 9.2341 -3.9430 -5.6637 23 1 9.1796 -4.4756 -3.2986 24 6 4.9617 -1.8713 -1.3576 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2128 2.3195 0.0005 29 1 1.3322 4.5115 0.0019 30 1 5.1357 2.5735 0.0103 31 1 3.8435 -0.6785 0.7289 32 1 5.2837 0.2584 0.2636 33 1 5.6293 0.9044 -1.8408 34 1 4.1449 0.9107 -2.8316 35 1 5.1345 -0.4910 -4.3479 36 1 6.6365 -0.4643 -3.3753 37 1 4.2067 -2.6167 -4.5019 38 1 6.7581 -2.8030 -6.2424 39 1 5.8857 -1.7894 -0.7853 40 1 4.3426 -2.6815 -0.9723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:38 Heat of formation + Delta-G solvation = -97.124691 kcal Electronic energy + Delta-G solvation = -24223.648712 eV Core-core repulsion = 20532.364752 eV Total energy + Delta-G solvation = -3691.283960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.79423 -40.23933 -38.25729 -37.12367 -34.81251 -32.12772 -32.06827 -29.93032 -29.11077 -27.94478 -27.20973 -25.61035 -23.94351 -22.32160 -21.67142 -19.99011 -19.45376 -17.98145 -17.10052 -16.93916 -16.79510 -15.85505 -15.34855 -15.18696 -14.87842 -14.72416 -14.55434 -14.33862 -13.94835 -13.54939 -13.30004 -12.94662 -12.67419 -12.39677 -12.23154 -12.05714 -11.83927 -11.45084 -11.23260 -11.08130 -11.01695 -10.88982 -10.68756 -10.52092 -10.38088 -10.29533 -9.72346 -9.15536 -9.04496 -8.55432 -8.07261 -7.96350 -7.62957 -6.16022 -4.23446 1.10996 1.24046 3.25064 3.32110 3.32542 3.35329 3.53070 4.26177 4.33946 4.57353 4.64801 4.88090 5.00083 5.03183 5.12601 5.14241 5.27004 5.46747 5.52864 5.59595 5.68155 5.80942 5.97510 6.01005 6.05629 6.07236 6.13896 6.23923 6.39112 6.53012 6.67059 6.71249 6.95577 7.10527 7.40242 7.42522 7.56223 7.61866 7.77412 7.86801 8.26029 8.78593 9.45324 9.57846 10.91163 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.004028 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.438366 B = 6950.186552 C = 7630.165090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.290 6.290 3 C 0.145 3.855 4 C -0.188 4.188 5 C -0.118 4.118 6 C 0.054 3.946 7 F -0.145 7.145 8 C -0.109 4.109 9 C -0.074 4.074 10 C 0.092 3.908 11 N -0.500 5.500 12 C 0.038 3.962 13 C -0.129 4.129 14 C 0.258 3.742 15 O -0.577 6.577 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.053 3.947 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.374 0.626 38 H 0.265 0.735 39 H 0.044 0.956 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 10.095 10.382 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.202 6.202 3 C 0.098 3.902 4 C -0.207 4.207 5 C -0.137 4.137 6 C 0.035 3.965 7 F -0.124 7.124 8 C -0.129 4.129 9 C -0.075 4.075 10 C -0.036 4.036 11 N -0.224 5.224 12 C -0.090 4.090 13 C -0.168 4.168 14 C 0.218 3.782 15 O -0.384 6.384 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.074 4.074 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.222 0.778 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.147 9.792 10.689 17.694 hybrid contribution 1.717 0.142 -0.646 1.840 sum -8.430 9.933 10.042 16.449 Atomic orbital electron populations 1.23071 0.78932 1.04128 1.00770 1.86281 1.20628 1.25632 1.87642 1.18809 0.91644 0.84534 0.95187 1.21051 1.00257 0.91394 1.08019 1.20825 0.92591 0.98535 1.01717 1.17465 0.90809 0.80427 1.07830 1.91469 1.83381 1.43034 1.94492 1.20904 1.00594 0.90185 1.01186 1.19055 0.90950 0.94952 1.02556 1.21041 0.96352 0.92437 0.93808 1.64829 1.51015 1.03637 1.02897 1.22909 0.95807 0.95788 0.94525 1.22952 0.99350 0.96978 0.97485 1.19314 0.84009 0.88756 0.86149 1.86167 1.43156 1.85585 1.23529 1.21607 1.12488 1.30473 0.92918 0.92173 1.24977 0.96745 0.95371 0.95912 1.69783 1.42595 1.42017 0.98858 0.86503 0.81875 0.81309 0.77820 1.20514 1.21199 1.19845 1.23192 0.95049 0.90370 0.98748 0.93129 0.92705 0.88113 0.84668 0.84873 0.84405 0.89748 0.94259 0.95496 0.92244 0.91629 0.92069 0.77792 0.92507 0.93777 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.29 -4.17 9.83 -19.58 -0.19 -4.36 16 3 C 0.15 2.05 6.66 -39.24 -0.26 1.78 16 4 C -0.19 -2.18 9.04 -39.44 -0.36 -2.54 16 5 C -0.12 -1.35 10.02 -39.53 -0.40 -1.75 16 6 C 0.05 0.71 7.30 -39.42 -0.29 0.42 16 7 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 8 C -0.11 -1.50 9.57 -39.53 -0.38 -1.88 16 9 C -0.07 -1.10 4.76 -104.48 -0.50 -1.60 16 10 C 0.09 1.49 4.48 -4.98 -0.02 1.47 16 11 N -0.50 -9.91 5.29 -231.90 -1.23 -11.14 16 12 C 0.04 0.76 5.96 -2.75 -0.02 0.74 16 13 C -0.13 -3.03 5.25 -25.37 -0.13 -3.16 16 14 C 0.26 6.48 0.94 -89.91 -0.08 6.40 16 15 O -0.58 -15.37 13.09 -35.23 -0.46 -15.83 16 16 C -0.54 -14.48 8.13 -34.44 -0.28 -14.76 16 17 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 18 C 0.07 1.93 5.31 -17.82 -0.09 1.84 16 19 N -0.89 -24.13 11.10 55.43 0.62 -23.51 16 20 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.05 1.17 5.69 -1.90 -0.01 1.16 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 29 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.14 1.75 8.00 -52.48 -0.42 1.33 16 31 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.04 0.61 7.75 -51.93 -0.40 0.20 16 33 H 0.03 0.50 7.65 -51.93 -0.40 0.10 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.62 7.89 -51.93 -0.41 1.21 16 36 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 37 H 0.37 9.97 7.53 45.56 0.34 10.31 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 40 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -29.29 333.12 -7.93 -37.22 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.88 Total: 9.37 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.83 Total: -10.63 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.61 Total: -34.65 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.65 Total: -20.20 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.29 -7.93 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.900 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds