Wall clock time and date at job start Tue Mar 31 2020 06:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 117.00117 * 2 1 4 4 C 1.38722 * 120.02805 * 0.02562 * 3 2 1 5 5 C 1.38138 * 119.96574 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.02989 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.96985 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.06307 * 359.79011 * 6 5 4 9 9 C 1.38174 * 120.02858 * 0.46263 * 8 6 5 10 10 C 1.50697 * 120.01436 * 179.79193 * 9 8 6 11 11 N 1.46892 * 109.47241 * 254.56582 * 10 9 8 12 12 C 1.47909 * 110.99909 * 65.40111 * 11 10 9 13 13 C 1.53992 * 107.05710 * 145.84663 * 12 11 10 14 14 C 1.54600 * 105.14146 * 358.77186 * 13 12 11 15 15 O 1.42905 * 110.71842 * 96.40348 * 14 13 12 16 16 C 1.50702 * 110.72468 * 219.68631 * 14 13 12 17 17 H 1.07996 * 119.99679 * 116.88110 * 16 14 13 18 18 C 1.37871 * 119.99833 * 296.87773 * 16 14 13 19 19 N 1.31516 * 120.00246 * 4.28411 * 18 16 14 20 20 Si 1.86800 * 119.99784 * 184.27792 * 18 16 14 21 21 H 1.48505 * 109.47131 * 94.97047 * 20 18 16 22 22 H 1.48495 * 109.47489 * 214.96640 * 20 18 16 23 23 H 1.48499 * 109.47362 * 334.96997 * 20 18 16 24 24 C 1.48530 * 111.00171 * 182.79603 * 11 10 9 25 25 H 1.08997 * 109.46740 * 299.99898 * 1 2 3 26 26 H 1.09005 * 109.46876 * 59.99498 * 1 2 3 27 27 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.01885 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.97991 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.98896 * 180.23800 * 8 6 5 31 31 H 1.09004 * 109.47075 * 134.56825 * 10 9 8 32 32 H 1.08999 * 109.46992 * 14.56938 * 10 9 8 33 33 H 1.08997 * 109.91241 * 26.49067 * 12 11 10 34 34 H 1.08995 * 110.08160 * 265.28774 * 12 11 10 35 35 H 1.08998 * 110.31176 * 117.69185 * 13 12 11 36 36 H 1.09001 * 110.30603 * 239.85841 * 13 12 11 37 37 H 0.96693 * 114.00160 * 55.43671 * 15 14 13 38 38 H 0.97004 * 119.99875 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.66780 * 318.71805 * 24 11 10 40 40 H 1.09002 * 110.66557 * 81.68202 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9198 3.6052 0.0011 6 6 3.3026 3.6769 0.0016 7 9 3.9160 4.8806 0.0027 8 6 4.0572 2.5163 0.0060 9 6 3.4312 1.2845 0.0002 10 6 4.2529 0.0213 0.0002 11 7 4.2165 -0.5867 -1.3365 12 6 4.8817 0.2817 -2.3320 13 6 5.5617 -0.6448 -3.3569 14 6 5.2669 -2.0795 -2.8622 15 8 4.1315 -2.6240 -3.5380 16 6 6.4729 -2.9647 -3.0443 17 1 6.9584 -3.3996 -2.1832 18 6 6.9564 -3.2193 -4.3101 19 7 6.4182 -2.6236 -5.3518 20 14 8.3759 -4.4105 -4.5456 21 1 7.8426 -5.7599 -4.8618 22 1 9.2341 -3.9430 -5.6637 23 1 9.1796 -4.4756 -3.2986 24 6 4.9617 -1.8713 -1.3576 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2128 2.3195 0.0005 29 1 1.3322 4.5115 0.0019 30 1 5.1357 2.5735 0.0103 31 1 3.8435 -0.6785 0.7289 32 1 5.2837 0.2584 0.2636 33 1 5.6293 0.9044 -1.8408 34 1 4.1449 0.9107 -2.8316 35 1 5.1345 -0.4910 -4.3479 36 1 6.6365 -0.4643 -3.3753 37 1 4.2067 -2.6167 -4.5019 38 1 6.7581 -2.8030 -6.2424 39 1 5.8857 -1.7894 -0.7853 40 1 4.3426 -2.6815 -0.9723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:37 Heat of formation + Delta-G solvation = -117.314321 kcal Electronic energy + Delta-G solvation = -24224.524200 eV Core-core repulsion = 20532.364752 eV Total energy + Delta-G solvation = -3692.159448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.79883 -41.26656 -39.89735 -38.17048 -36.55807 -34.15809 -33.42799 -31.11527 -30.42646 -29.76780 -28.07683 -27.15115 -25.63973 -23.28078 -22.89359 -21.53973 -21.34203 -19.04207 -18.84206 -18.02393 -17.93508 -17.01801 -16.90527 -16.66338 -16.30043 -16.01477 -15.83836 -15.57851 -15.42674 -14.88372 -14.74828 -14.27298 -14.01028 -13.72241 -13.65319 -13.32408 -13.16183 -13.04116 -12.82017 -12.69766 -12.63881 -12.40670 -12.22104 -12.15373 -11.77736 -11.66445 -11.61325 -11.05179 -10.59178 -10.14927 -9.98178 -9.21638 -8.98298 -8.19204 -6.34307 0.13827 0.24998 1.40776 1.43341 1.52453 2.39269 2.43689 2.54178 3.05561 3.20559 3.38861 3.62341 3.75250 3.99580 4.05546 4.11716 4.18846 4.25964 4.43490 4.45464 4.48305 4.48738 4.52887 4.74844 4.76332 4.80214 4.88020 4.89833 5.09156 5.13442 5.14308 5.23352 5.34363 5.47741 5.58623 5.75611 5.77831 5.93739 6.20691 6.31903 6.51181 6.71487 7.37494 7.48244 8.86495 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.004028 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.438366 B = 6950.186552 C = 7630.165090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.134 3.866 4 C -0.181 4.181 5 C -0.107 4.107 6 C 0.040 3.960 7 F -0.149 7.149 8 C -0.113 4.113 9 C -0.097 4.097 10 C 0.095 3.905 11 N -0.506 5.506 12 C 0.051 3.949 13 C -0.119 4.119 14 C 0.242 3.758 15 O -0.587 6.587 16 C -0.562 4.562 17 H 0.055 0.945 18 C 0.031 3.969 19 N -0.911 5.911 20 Si 0.958 3.042 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.062 3.938 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.368 0.632 38 H 0.267 0.733 39 H 0.050 0.950 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 11.070 11.253 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.200 4.200 5 C -0.126 4.126 6 C 0.021 3.979 7 F -0.128 7.128 8 C -0.133 4.133 9 C -0.098 4.098 10 C -0.032 4.032 11 N -0.230 5.230 12 C -0.077 4.077 13 C -0.158 4.158 14 C 0.202 3.798 15 O -0.393 6.393 16 C -0.600 4.600 17 H 0.073 0.927 18 C -0.170 4.170 19 N -0.550 5.550 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.066 4.066 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.216 0.784 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.981 10.776 11.575 19.253 hybrid contribution 1.891 -0.140 -0.901 2.099 sum -9.091 10.636 10.674 17.598 Atomic orbital electron populations 1.23345 0.76778 1.05271 1.02318 1.86234 1.23048 1.26220 1.87725 1.19027 0.91658 0.85367 0.95265 1.21360 1.01679 0.90386 1.06552 1.21181 0.92063 0.99712 0.99630 1.17634 0.91627 0.80069 1.08613 1.91459 1.83596 1.43132 1.94607 1.20953 1.00988 0.90202 1.01106 1.18955 0.91510 0.94392 1.04982 1.21018 0.97298 0.93253 0.91643 1.64763 1.50394 1.02918 1.04879 1.22737 0.95974 0.95126 0.93893 1.22742 0.98415 0.97175 0.97496 1.19558 0.83251 0.89095 0.87935 1.86158 1.43994 1.85974 1.23223 1.21888 1.13513 1.31433 0.93173 0.92671 1.25672 0.98988 0.96672 0.95631 1.69872 1.43450 1.42583 0.99097 0.85555 0.79116 0.79150 0.77821 1.20344 1.20654 1.19422 1.23016 0.95447 0.91549 0.96564 0.90670 0.91906 0.87395 0.81635 0.81963 0.84042 0.89595 0.93439 0.93795 0.92046 0.93584 0.93677 0.78380 0.92346 0.93197 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.32 -8.74 9.83 -92.98 -0.91 -9.65 16 3 C 0.13 3.53 6.66 22.49 0.15 3.68 16 4 C -0.18 -3.64 9.04 22.36 0.20 -3.44 16 5 C -0.11 -2.13 10.02 22.30 0.22 -1.90 16 6 C 0.04 0.97 7.30 22.37 0.16 1.13 16 7 F -0.15 -3.77 17.27 44.97 0.78 -2.99 16 8 C -0.11 -2.96 9.57 22.30 0.21 -2.75 16 9 C -0.10 -2.78 4.76 -19.77 -0.09 -2.87 16 10 C 0.10 3.04 4.48 85.56 0.38 3.42 16 11 N -0.51 -19.87 5.29 -887.60 -4.70 -24.56 16 12 C 0.05 2.02 5.96 86.44 0.52 2.54 16 13 C -0.12 -5.71 5.25 31.47 0.17 -5.55 16 14 C 0.24 12.33 0.94 -10.33 -0.01 12.32 16 15 O -0.59 -31.92 13.09 -148.98 -1.95 -33.87 16 16 C -0.56 -30.72 8.13 25.60 0.21 -30.52 16 17 H 0.06 2.99 7.78 -2.91 -0.02 2.96 16 18 C 0.03 1.67 5.31 84.65 0.45 2.12 16 19 N -0.91 -49.76 11.10 21.45 0.24 -49.52 16 20 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.06 2.73 5.69 86.65 0.49 3.22 16 25 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 26 H 0.06 0.95 7.66 -2.38 -0.02 0.94 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.17 2.23 6.30 -2.91 -0.02 2.21 16 29 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.14 3.45 8.00 -2.91 -0.02 3.43 16 31 H 0.09 2.68 8.01 -2.38 -0.02 2.66 16 32 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 33 H 0.04 1.59 7.65 -2.39 -0.02 1.58 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 2.33 7.89 -2.39 -0.02 2.31 16 36 H 0.04 2.25 7.84 -2.39 -0.02 2.23 16 37 H 0.37 20.26 7.53 -74.06 -0.56 19.70 16 38 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -62.59 333.12 0.15 -62.44 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.50 Total: 30.63 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.17 Total: -17.19 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -4.46 Total: -74.09 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.86 Total: -43.53 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.59 0.15 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.875 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds