Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 117.00252 * 2 1 4 4 C 1.38603 * 120.03347 * 359.97438 * 3 2 1 5 5 C 1.38637 * 119.91375 * 180.02562 * 4 3 2 6 6 O 1.35943 * 120.00468 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00182 * 359.97438 * 6 5 4 8 8 C 1.38737 * 119.98539 * 359.97438 * 5 4 3 9 9 C 1.50699 * 119.96519 * 179.97438 * 8 5 4 10 10 N 1.46497 * 109.47264 * 80.00064 * 9 8 5 11 11 C 1.36933 * 119.99661 * 89.99601 * 10 9 8 12 12 H 1.08002 * 120.00286 * 214.83019 * 11 10 9 13 13 C 1.38813 * 120.00129 * 34.84144 * 11 10 9 14 14 N 1.31625 * 119.99493 * 22.22478 * 13 11 10 15 15 Si 1.86793 * 120.00111 * 202.22710 * 13 11 10 16 16 H 1.48499 * 109.47124 * 89.99655 * 15 13 11 17 17 H 1.48499 * 109.47266 * 209.99678 * 15 13 11 18 18 H 1.48497 * 109.47232 * 329.99661 * 15 13 11 19 19 C 1.46499 * 120.00294 * 270.00687 * 10 9 8 20 20 C 1.53000 * 117.49931 * 191.80566 * 19 10 9 21 21 C 1.53000 * 117.50284 * 123.14279 * 19 10 9 22 22 C 1.38211 * 120.06905 * 359.75422 * 8 5 4 23 23 C 1.38327 * 120.07839 * 0.50393 * 22 8 5 24 24 F 1.35108 * 119.98657 * 179.77143 * 23 22 8 25 25 H 1.08997 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46561 * 300.00225 * 1 2 3 27 27 H 1.08999 * 109.47017 * 59.99250 * 1 2 3 28 28 H 1.08002 * 120.04445 * 0.04298 * 4 3 2 29 29 H 1.09002 * 109.46992 * 60.00197 * 7 6 5 30 30 H 1.08998 * 109.47655 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.47190 * 300.00206 * 7 6 5 32 32 H 1.08995 * 109.47463 * 200.00723 * 9 8 5 33 33 H 1.09008 * 109.46956 * 320.00649 * 9 8 5 34 34 H 0.97003 * 119.99189 * 174.62354 * 14 13 11 35 35 H 1.09007 * 115.54904 * 337.47052 * 19 10 9 36 36 H 1.09004 * 117.50078 * 359.97438 * 20 19 10 37 37 H 1.08997 * 117.50011 * 145.01288 * 20 19 10 38 38 H 1.08998 * 117.49755 * 214.97280 * 21 19 10 39 39 H 1.09000 * 117.49766 * 0.02562 * 21 19 10 40 40 H 1.07996 * 119.95625 * 180.25204 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2921 2.3742 -0.0005 5 6 1.9241 3.6081 -0.0011 6 8 1.1863 4.7499 -0.0011 7 6 -0.2352 4.6037 -0.0011 8 6 3.3098 3.6774 -0.0005 9 6 3.9963 5.0189 -0.0017 10 7 4.0047 5.5644 1.3579 11 6 5.0482 5.2874 2.2003 12 1 4.8700 5.1639 3.2583 13 6 6.3351 5.1656 1.6944 14 7 6.6450 5.7232 0.5430 15 14 7.6268 4.2106 2.6475 16 1 7.5955 2.7853 2.2319 17 1 8.9698 4.7786 2.3667 18 1 7.3421 4.3085 4.1016 19 6 2.8967 6.4060 1.8164 20 6 3.0849 7.1680 3.1298 21 6 2.1446 5.9615 3.0724 22 6 4.0611 2.5174 0.0057 23 6 3.4334 1.2848 0.0008 24 9 4.1698 0.1520 0.0022 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2135 2.3192 -0.0003 29 1 -0.5441 4.0554 0.8890 30 1 -0.7018 5.5888 -0.0015 31 1 -0.5441 4.0553 -0.8911 32 1 5.0216 4.9021 -0.3527 33 1 3.4612 5.7004 -0.6632 34 1 7.5619 5.7052 0.2268 35 1 2.3197 6.8931 1.0302 36 1 4.0330 7.0428 3.6529 37 1 2.6315 8.1561 3.2078 38 1 1.0730 6.1564 3.1128 39 1 2.4745 5.0430 3.5579 40 1 5.1396 2.5735 0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593569407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -53.929890 kcal Electronic energy + Delta-G solvation = -24913.982152 eV Core-core repulsion = 21224.571260 eV Total energy + Delta-G solvation = -3689.410893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.72634 -41.46812 -39.80734 -38.67848 -37.51829 -35.26765 -33.06152 -31.17644 -30.76715 -28.84799 -27.95268 -26.79868 -25.14039 -23.30763 -22.89780 -22.47639 -21.53942 -19.74413 -18.46273 -18.32505 -17.91819 -17.23624 -17.17844 -16.91428 -16.42784 -16.11970 -15.99800 -15.69807 -15.54125 -15.41386 -15.01148 -14.63895 -14.09296 -13.72015 -13.60348 -13.15583 -12.99462 -12.87779 -12.70480 -12.56293 -12.41063 -12.32618 -12.24632 -12.13414 -11.86778 -11.78569 -11.43033 -11.25500 -10.84643 -10.39150 -9.69932 -8.76285 -8.42191 -7.83531 -5.38070 0.19762 0.30811 1.41134 1.46954 1.51620 2.17852 2.42150 2.45989 2.60055 3.17322 3.30942 3.52601 3.67555 3.74039 3.93819 4.06281 4.33700 4.37686 4.39202 4.44819 4.48854 4.51163 4.56188 4.63626 4.68643 4.74200 4.80240 4.84014 4.97484 4.98656 5.10496 5.15466 5.41462 5.49420 5.58222 5.58863 5.71826 5.83830 6.19425 6.48599 6.55965 7.16654 7.88519 8.38510 9.13385 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.007117 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.785191 B = 3933.480348 C = 5369.334311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.124 3.876 4 C -0.264 4.264 5 C 0.173 3.827 6 O -0.309 6.309 7 C 0.014 3.986 8 C -0.131 4.131 9 C 0.195 3.805 10 N -0.554 5.554 11 C -0.252 4.252 12 H 0.050 0.950 13 C -0.025 4.025 14 N -0.912 5.912 15 Si 0.940 3.060 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.201 4.201 21 C -0.200 4.200 22 C -0.075 4.075 23 C -0.002 4.002 24 F -0.152 7.152 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.176 0.824 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.255 0.745 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 -5.363 -2.626 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.283 4.283 5 C 0.126 3.874 6 O -0.222 6.222 7 C -0.080 4.080 8 C -0.134 4.134 9 C 0.069 3.931 10 N -0.270 5.270 11 C -0.382 4.382 12 H 0.067 0.933 13 C -0.223 4.223 14 N -0.556 5.556 15 Si 0.769 3.231 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.199 1.199 19 C 0.016 3.984 20 C -0.239 4.239 21 C -0.241 4.241 22 C -0.095 4.095 23 C -0.022 4.022 24 F -0.131 7.131 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.193 0.807 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.003 -5.411 -2.760 18.056 hybrid contribution 1.089 -0.784 0.659 1.495 sum -15.914 -6.195 -2.101 17.206 Atomic orbital electron populations 1.23462 0.75685 1.06036 1.02684 1.86105 1.24225 1.25373 1.88641 1.18552 0.89707 0.85901 0.98109 1.21255 1.01645 0.89753 1.15644 1.18564 0.90184 0.85462 0.93219 1.86203 1.20593 1.27825 1.87554 1.23399 0.76876 1.05593 1.02133 1.20155 0.91343 0.97605 1.04307 1.19650 1.00050 0.87583 0.85823 1.43461 1.19188 1.52778 1.11597 1.18998 0.86231 1.42052 0.90965 0.93275 1.25564 0.98451 1.00205 0.98083 1.69962 1.18114 1.44965 1.22589 0.85684 0.79249 0.79043 0.79079 1.21514 1.21505 1.19922 1.21206 0.92373 0.95645 0.89195 1.23123 1.00593 0.96055 1.04172 1.23193 0.97197 0.97093 1.06569 1.20636 1.00209 0.89779 0.98918 1.17021 0.86956 0.82277 1.15931 1.91394 1.77137 1.49382 1.95179 0.85807 0.91447 0.90959 0.80728 0.91891 0.86264 0.91270 0.90270 0.93836 0.93560 0.87870 0.91253 0.87965 0.87821 0.92403 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -9.48 10.36 -93.00 -0.96 -10.44 16 3 C 0.12 4.11 6.69 22.52 0.15 4.26 16 4 C -0.26 -7.51 8.02 22.45 0.18 -7.33 16 5 C 0.17 5.89 6.66 22.48 0.15 6.04 16 6 O -0.31 -9.17 8.43 -92.91 -0.78 -9.96 16 7 C 0.01 0.25 9.81 113.37 1.11 1.36 16 8 C -0.13 -5.44 5.48 -19.75 -0.11 -5.55 16 9 C 0.19 9.17 5.13 85.63 0.44 9.60 16 10 N -0.55 -27.15 2.78 -682.34 -1.90 -29.04 16 11 C -0.25 -13.67 8.21 84.03 0.69 -12.98 16 12 H 0.05 2.75 7.14 -2.91 -0.02 2.73 16 13 C -0.03 -1.40 4.96 84.86 0.42 -0.98 16 14 N -0.91 -52.13 11.32 21.65 0.25 -51.88 16 15 Si 0.94 45.30 29.61 68.60 2.03 47.33 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 19 C 0.12 5.14 5.54 44.99 0.25 5.39 16 20 C -0.20 -7.80 9.79 30.62 0.30 -7.50 16 21 C -0.20 -7.31 10.16 30.62 0.31 -7.00 16 22 C -0.08 -3.23 9.64 22.28 0.21 -3.02 16 23 C 0.00 -0.08 7.31 22.45 0.16 0.08 16 24 F -0.15 -6.23 17.11 44.97 0.77 -5.46 16 25 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 27 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 28 H 0.18 3.40 4.53 -2.91 -0.01 3.38 16 29 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 32 H 0.08 4.25 5.21 -2.39 -0.01 4.24 16 33 H 0.04 1.97 7.75 -2.38 -0.02 1.95 16 34 H 0.25 14.14 8.32 -92.71 -0.77 13.37 16 35 H 0.10 3.97 7.89 -2.38 -0.02 3.95 16 36 H 0.07 3.09 6.80 -2.38 -0.02 3.08 16 37 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.12 5.61 8.04 -2.91 -0.02 5.59 16 Total: -1.00 -66.55 335.16 5.84 -60.70 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.06 Total: 15.02 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.39 Total: -16.27 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.65 Total: -80.93 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.75 Total: -20.40 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.77 Total: -5.46 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -66.55 5.84 -60.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593569407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.773 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds