Wall clock time and date at job start Tue Mar 31 2020 07:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99775 * 2 1 4 4 C 1.50694 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.33392 * 122.54210 * 269.98144 * 4 3 2 6 6 S 1.75883 * 109.59357 * 179.77710 * 5 4 3 7 7 C 1.75881 * 90.97304 * 0.31213 * 6 5 4 8 8 C 1.50692 * 125.20269 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47357 * 269.69419 * 8 7 6 10 10 C 1.46899 * 111.00578 * 169.99981 * 9 8 7 11 11 C 1.50698 * 109.47169 * 284.06578 * 10 9 8 12 12 H 1.08000 * 119.99717 * 4.76067 * 11 10 9 13 13 C 1.37877 * 120.00105 * 184.77255 * 11 10 9 14 14 N 1.31516 * 119.99647 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47612 * 59.99668 * 15 13 11 17 17 H 1.48502 * 109.47259 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47270 * 299.99423 * 15 13 11 19 19 C 1.46905 * 111.00200 * 293.95953 * 9 8 7 20 20 C 1.52992 * 109.47435 * 163.92256 * 19 9 8 21 21 C 1.53008 * 117.49706 * 245.31748 * 20 19 9 22 22 C 1.53002 * 117.49834 * 176.65982 * 20 19 9 23 23 C 1.33390 * 109.58775 * 359.68911 * 7 6 5 24 24 H 1.09008 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47114 * 299.99003 * 1 2 3 26 26 H 1.08997 * 109.47723 * 59.99684 * 1 2 3 27 27 H 1.08998 * 109.46881 * 60.00512 * 3 2 1 28 28 H 1.08999 * 109.47194 * 300.00709 * 3 2 1 29 29 H 1.08003 * 125.20109 * 0.05745 * 5 4 3 30 30 H 1.08994 * 109.47483 * 29.69409 * 8 7 6 31 31 H 1.09001 * 109.47156 * 149.69866 * 8 7 6 32 32 H 1.09005 * 109.46560 * 44.05754 * 10 9 8 33 33 H 1.08994 * 109.47682 * 164.05805 * 10 9 8 34 34 H 0.97004 * 119.99809 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.46761 * 283.92066 * 19 9 8 36 36 H 1.08994 * 109.46950 * 43.91573 * 19 9 8 37 37 H 1.09001 * 115.55351 * 30.98363 * 20 19 9 38 38 H 1.08999 * 117.49715 * 0.02562 * 21 20 19 39 39 H 1.08994 * 117.49817 * 145.01776 * 21 20 19 40 40 H 1.09005 * 117.49445 * 214.97229 * 22 20 19 41 41 H 1.08991 * 117.49992 * 359.97438 * 22 20 19 42 42 H 1.08008 * 122.53624 * 180.26558 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2282 1.1301 1.1236 6 16 5.9363 0.9884 0.7287 7 6 5.5723 1.0241 -0.9916 8 6 6.5929 0.9426 -2.0974 9 7 7.0341 2.2968 -2.4574 10 6 8.1931 2.2508 -3.3587 11 6 9.4293 1.9034 -2.5699 12 1 9.3495 1.6585 -1.5211 13 6 10.6622 1.8985 -3.1872 14 7 10.7592 2.1965 -4.4644 15 14 12.1946 1.4686 -2.2093 16 1 12.0626 0.0950 -1.6606 17 1 13.3831 1.5344 -3.0973 18 1 12.3564 2.4342 -1.0927 19 6 5.9345 3.0679 -3.0527 20 6 6.2920 4.5554 -3.0450 21 6 5.4414 5.4819 -2.1736 22 6 5.3028 5.5232 -3.6975 23 6 4.2542 1.1281 -1.1678 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6884 1.8465 -0.8899 29 1 3.8208 1.1617 2.1233 30 1 7.4493 0.3595 -1.7591 31 1 6.1473 0.4622 -2.9684 32 1 8.0271 1.4943 -4.1257 33 1 8.3251 3.2242 -3.8310 34 1 11.6266 2.1927 -4.8988 35 1 5.7737 2.7382 -4.0792 36 1 5.0247 2.9098 -2.4737 37 1 7.3539 4.7843 -3.1353 38 1 4.6274 5.0315 -1.6056 39 1 5.9436 6.3203 -1.6911 40 1 5.7139 6.3889 -4.2169 41 1 4.3975 5.1000 -4.1327 42 1 3.8000 1.1636 -2.1471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:28 Heat of formation + Delta-G solvation = 17.148802 kcal Electronic energy + Delta-G solvation = -21415.363888 eV Core-core repulsion = 18295.248375 eV Total energy + Delta-G solvation = -3120.115513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.90973 -37.88886 -36.84680 -35.40340 -32.60961 -30.77955 -27.92989 -27.58155 -26.47725 -25.74720 -23.87137 -22.06512 -21.83503 -20.71425 -19.51169 -18.68434 -17.08767 -16.55148 -16.43821 -15.84332 -15.35215 -15.23120 -14.88755 -14.48371 -14.06732 -13.69865 -13.46009 -12.93870 -12.78820 -12.44681 -12.30150 -12.16356 -12.04229 -11.73833 -11.51889 -11.23071 -11.19396 -10.92816 -10.78384 -10.63231 -10.56032 -10.35122 -9.97562 -9.85037 -9.71560 -9.48143 -9.24469 -8.42961 -8.35380 -8.14609 -7.26932 -6.01507 -4.02833 1.23178 1.91874 2.31871 2.72578 3.34768 3.38719 3.42033 3.96058 4.21116 4.44486 4.83161 4.91682 4.94394 5.11695 5.17104 5.22777 5.27874 5.31318 5.34002 5.36494 5.43615 5.50676 5.64449 5.78828 5.89733 5.91765 5.99311 6.08913 6.23298 6.26435 6.31030 6.43073 6.44595 6.56274 6.71905 6.83586 6.98108 7.21364 7.31173 7.81882 8.09868 8.17373 8.52805 9.04242 9.61311 11.08854 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004286 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.833365 B = 6531.900099 C = 7639.695636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.124 3.876 4 C -0.104 4.104 5 C -0.215 4.215 6 S 0.135 5.865 7 C -0.138 4.138 8 C 0.126 3.874 9 N -0.526 5.526 10 C 0.192 3.808 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.080 3.920 20 C -0.128 4.128 21 C -0.178 4.178 22 C -0.190 4.190 23 C -0.142 4.142 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.158 0.842 30 H 0.094 0.906 31 H 0.042 0.958 32 H -0.010 1.010 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 0.082 7.738 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.046 3.954 4 C -0.117 4.117 5 C -0.351 4.351 6 S 0.400 5.600 7 C -0.256 4.256 8 C -0.004 4.004 9 N -0.250 5.250 10 C 0.068 3.932 11 C -0.544 4.544 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.048 4.048 20 C -0.147 4.147 21 C -0.215 4.215 22 C -0.227 4.227 23 C -0.172 4.172 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.176 0.824 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.202 0.053 8.873 18.473 hybrid contribution -0.882 -0.169 -1.113 1.430 sum -17.084 -0.116 7.760 18.764 Atomic orbital electron populations 1.22738 0.81357 1.02681 0.99848 1.87998 1.19230 1.27796 1.95356 1.21009 0.89220 0.84694 1.00487 1.18418 0.94681 1.06038 0.92577 1.25480 0.97290 1.10493 1.01871 1.84409 1.04426 1.70543 1.00578 1.24638 0.97462 1.05753 0.97737 1.20508 0.95039 0.92519 0.92311 1.62091 1.06053 1.11349 1.45512 1.19804 0.86241 0.97109 0.90089 1.21118 0.90871 1.45914 0.96512 0.92003 1.24966 0.99043 0.95563 0.94920 1.69946 1.24758 1.49256 1.09904 0.86595 0.82202 0.79016 0.79821 1.20257 1.21417 1.20150 1.21684 0.94802 0.91596 0.96752 1.22306 0.97829 0.91890 1.02629 1.22907 1.03100 1.02765 0.92720 1.22927 1.01795 1.02404 0.95595 1.19828 0.92509 1.06110 0.98769 0.89700 0.94218 0.94097 0.92714 0.92522 0.82433 0.88784 0.94046 0.99239 0.94272 0.92895 0.95572 0.91456 0.86839 0.89460 0.89430 0.89282 0.89514 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.69 10.69 -35.23 -0.38 -5.07 16 3 C 0.12 1.40 6.19 36.00 0.22 1.62 16 4 C -0.10 -1.42 5.43 -106.25 -0.58 -1.99 16 5 C -0.21 -2.86 10.98 29.04 0.32 -2.54 16 6 S 0.13 2.06 23.33 -107.50 -2.51 -0.45 16 7 C -0.14 -2.29 5.49 -36.01 -0.20 -2.49 16 8 C 0.13 2.40 5.28 -4.98 -0.03 2.38 16 9 N -0.53 -11.08 4.37 -237.53 -1.04 -12.12 16 10 C 0.19 4.88 4.55 -4.98 -0.02 4.85 16 11 C -0.51 -13.95 8.62 -34.44 -0.30 -14.25 16 12 H 0.06 1.70 7.67 -52.49 -0.40 1.30 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.08 1.46 5.10 -3.83 -0.02 1.44 16 20 C -0.13 -2.25 5.58 -90.62 -0.51 -2.75 16 21 C -0.18 -2.63 10.18 -26.69 -0.27 -2.90 16 22 C -0.19 -2.71 10.25 -26.69 -0.27 -2.98 16 23 C -0.14 -2.13 8.18 -41.21 -0.34 -2.47 16 24 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.09 1.94 7.34 -51.93 -0.38 1.56 16 31 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 32 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 33 H 0.04 1.06 6.46 -51.93 -0.34 0.73 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 36 H 0.07 1.12 5.14 -51.93 -0.27 0.86 16 37 H 0.11 2.30 6.88 -51.93 -0.36 1.95 16 38 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.13 1.87 7.83 -52.48 -0.41 1.46 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -29.85 359.82 -10.52 -40.37 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.76 Total: 0.21 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.97 Total: -19.24 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.30 Total: -37.80 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.51 Total: -0.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.85 -10.52 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.516 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds