Wall clock time and date at job start Tue Mar 31 2020 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99775 * 2 1 4 4 C 1.50694 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.33392 * 122.54210 * 269.98144 * 4 3 2 6 6 S 1.75883 * 109.59357 * 179.77710 * 5 4 3 7 7 C 1.75881 * 90.97304 * 0.31213 * 6 5 4 8 8 C 1.50692 * 125.20269 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47357 * 269.69419 * 8 7 6 10 10 C 1.46899 * 111.00578 * 169.99981 * 9 8 7 11 11 C 1.50698 * 109.47169 * 284.06578 * 10 9 8 12 12 H 1.08000 * 119.99717 * 4.76067 * 11 10 9 13 13 C 1.37877 * 120.00105 * 184.77255 * 11 10 9 14 14 N 1.31516 * 119.99647 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47612 * 59.99668 * 15 13 11 17 17 H 1.48502 * 109.47259 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47270 * 299.99423 * 15 13 11 19 19 C 1.46905 * 111.00200 * 293.95953 * 9 8 7 20 20 C 1.52992 * 109.47435 * 163.92256 * 19 9 8 21 21 C 1.53008 * 117.49706 * 245.31748 * 20 19 9 22 22 C 1.53002 * 117.49834 * 176.65982 * 20 19 9 23 23 C 1.33390 * 109.58775 * 359.68911 * 7 6 5 24 24 H 1.09008 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47114 * 299.99003 * 1 2 3 26 26 H 1.08997 * 109.47723 * 59.99684 * 1 2 3 27 27 H 1.08998 * 109.46881 * 60.00512 * 3 2 1 28 28 H 1.08999 * 109.47194 * 300.00709 * 3 2 1 29 29 H 1.08003 * 125.20109 * 0.05745 * 5 4 3 30 30 H 1.08994 * 109.47483 * 29.69409 * 8 7 6 31 31 H 1.09001 * 109.47156 * 149.69866 * 8 7 6 32 32 H 1.09005 * 109.46560 * 44.05754 * 10 9 8 33 33 H 1.08994 * 109.47682 * 164.05805 * 10 9 8 34 34 H 0.97004 * 119.99809 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.46761 * 283.92066 * 19 9 8 36 36 H 1.08994 * 109.46950 * 43.91573 * 19 9 8 37 37 H 1.09001 * 115.55351 * 30.98363 * 20 19 9 38 38 H 1.08999 * 117.49715 * 0.02562 * 21 20 19 39 39 H 1.08994 * 117.49817 * 145.01776 * 21 20 19 40 40 H 1.09005 * 117.49445 * 214.97229 * 22 20 19 41 41 H 1.08991 * 117.49992 * 359.97438 * 22 20 19 42 42 H 1.08008 * 122.53624 * 180.26558 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2282 1.1301 1.1236 6 16 5.9363 0.9884 0.7287 7 6 5.5723 1.0241 -0.9916 8 6 6.5929 0.9426 -2.0974 9 7 7.0341 2.2968 -2.4574 10 6 8.1931 2.2508 -3.3587 11 6 9.4293 1.9034 -2.5699 12 1 9.3495 1.6585 -1.5211 13 6 10.6622 1.8985 -3.1872 14 7 10.7592 2.1965 -4.4644 15 14 12.1946 1.4686 -2.2093 16 1 12.0626 0.0950 -1.6606 17 1 13.3831 1.5344 -3.0973 18 1 12.3564 2.4342 -1.0927 19 6 5.9345 3.0679 -3.0527 20 6 6.2920 4.5554 -3.0450 21 6 5.4414 5.4819 -2.1736 22 6 5.3028 5.5232 -3.6975 23 6 4.2542 1.1281 -1.1678 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6884 1.8465 -0.8899 29 1 3.8208 1.1617 2.1233 30 1 7.4493 0.3595 -1.7591 31 1 6.1473 0.4622 -2.9684 32 1 8.0271 1.4943 -4.1257 33 1 8.3251 3.2242 -3.8310 34 1 11.6266 2.1927 -4.8988 35 1 5.7737 2.7382 -4.0792 36 1 5.0247 2.9098 -2.4737 37 1 7.3539 4.7843 -3.1353 38 1 4.6274 5.0315 -1.6056 39 1 5.9436 6.3203 -1.6911 40 1 5.7139 6.3889 -4.2169 41 1 4.3975 5.1000 -4.1327 42 1 3.8000 1.1636 -2.1471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596995482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:27 Heat of formation + Delta-G solvation = -0.061363 kcal Electronic energy + Delta-G solvation = -21416.110177 eV Core-core repulsion = 18295.248375 eV Total energy + Delta-G solvation = -3120.861802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05264 -39.13852 -37.88250 -36.87042 -34.68245 -32.10822 -29.45780 -28.82943 -27.85265 -26.51070 -25.62643 -23.52252 -23.14469 -22.04197 -21.01970 -19.81584 -18.62334 -18.18441 -17.30118 -16.86740 -16.75925 -16.62248 -16.18844 -15.95379 -15.50308 -15.19649 -14.70836 -14.32198 -13.94312 -13.90677 -13.75668 -13.40468 -13.30069 -13.13505 -12.83078 -12.65423 -12.55816 -12.36255 -12.31347 -12.23754 -12.09950 -11.73384 -11.50878 -11.37705 -11.09646 -10.79769 -10.59187 -10.56906 -9.58784 -9.32024 -8.99890 -8.18680 -6.28302 0.07797 0.74865 1.16533 1.40417 1.43165 1.50935 1.62197 2.40572 2.92962 3.12775 3.17673 3.39045 3.78424 3.97011 4.06789 4.09423 4.22234 4.25472 4.33454 4.42083 4.53136 4.54724 4.59898 4.61277 4.68974 4.74471 4.76507 4.78750 4.80198 4.90581 5.04589 5.15625 5.16628 5.28603 5.30500 5.41535 5.45591 5.56339 5.66832 6.08470 6.26851 6.34162 6.61418 6.86092 7.40749 8.91439 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004286 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.833365 B = 6531.900099 C = 7639.695636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.126 3.874 4 C -0.114 4.114 5 C -0.195 4.195 6 S 0.111 5.889 7 C -0.167 4.167 8 C 0.132 3.868 9 N -0.531 5.531 10 C 0.210 3.790 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.087 3.913 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.128 4.128 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.188 0.812 30 H 0.069 0.931 31 H 0.041 0.959 32 H -0.039 1.039 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.017 0.983 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 0.557 9.484 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.048 3.952 4 C -0.127 4.127 5 C -0.331 4.331 6 S 0.376 5.624 7 C -0.285 4.285 8 C 0.003 3.997 9 N -0.255 5.255 10 C 0.084 3.916 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.193 4.193 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.195 1.195 19 C -0.041 4.041 20 C -0.184 4.184 21 C -0.199 4.199 22 C -0.204 4.204 23 C -0.159 4.159 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.205 0.795 30 H 0.088 0.912 31 H 0.059 0.941 32 H -0.021 1.021 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.455 0.528 10.630 21.305 hybrid contribution -0.309 -0.324 -1.642 1.702 sum -18.765 0.204 8.988 20.807 Atomic orbital electron populations 1.22932 0.79386 1.03707 1.01084 1.87944 1.21425 1.28352 1.95627 1.21062 0.87248 0.84780 1.02150 1.18679 0.96367 1.05778 0.91829 1.25817 0.95478 1.08507 1.03262 1.84456 1.06839 1.71216 0.99879 1.24287 0.97454 1.09142 0.97592 1.20307 0.94957 0.91085 0.93359 1.62012 1.06202 1.12918 1.44354 1.19399 0.87853 0.94543 0.89758 1.21404 0.92056 1.45834 0.96486 0.92374 1.25834 1.02303 0.95301 0.95893 1.70072 1.25608 1.50198 1.11504 0.85531 0.78156 0.79108 0.78426 1.19308 1.20790 1.19454 1.21690 0.94382 0.91696 0.96302 1.22138 0.96727 0.92213 1.07318 1.22980 1.02096 1.01529 0.93246 1.23027 1.00809 1.01018 0.95587 1.20029 0.91860 1.04090 0.99917 0.88916 0.92672 0.93118 0.90529 0.91406 0.79490 0.91247 0.94142 1.02128 0.96747 0.92736 0.96463 0.89419 0.90645 0.88110 0.88741 0.88318 0.87658 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.88 10.69 -148.98 -1.59 -10.47 16 3 C 0.13 2.38 6.19 71.23 0.44 2.82 16 4 C -0.11 -2.80 5.43 -20.92 -0.11 -2.91 16 5 C -0.19 -4.64 10.98 66.72 0.73 -3.91 16 6 S 0.11 3.31 23.33 -56.49 -1.32 1.99 16 7 C -0.17 -5.55 5.49 24.59 0.13 -5.41 16 8 C 0.13 5.27 5.28 85.55 0.45 5.72 16 9 N -0.53 -23.38 4.37 -905.40 -3.96 -27.33 16 10 C 0.21 11.34 4.55 85.56 0.39 11.73 16 11 C -0.52 -29.88 8.62 25.60 0.22 -29.66 16 12 H 0.06 3.31 7.67 -2.91 -0.02 3.29 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 15 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.09 3.23 5.10 86.30 0.44 3.67 16 20 C -0.17 -5.87 5.58 -10.79 -0.06 -5.93 16 21 C -0.16 -4.48 10.18 30.62 0.31 -4.17 16 22 C -0.17 -4.48 10.25 30.62 0.31 -4.17 16 23 C -0.13 -3.65 8.18 21.22 0.17 -3.48 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 28 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.07 3.05 7.34 -2.39 -0.02 3.03 16 31 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 32 H -0.04 -2.26 8.00 -2.38 -0.02 -2.28 16 33 H 0.01 0.84 6.46 -2.39 -0.02 0.83 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.02 0.66 8.05 -2.39 -0.02 0.64 16 36 H 0.09 2.85 5.14 -2.39 -0.01 2.84 16 37 H 0.08 3.26 6.88 -2.39 -0.02 3.24 16 38 H 0.10 2.53 8.04 -2.39 -0.02 2.51 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.14 3.71 7.83 -2.91 -0.02 3.69 16 Total: -1.00 -66.54 359.82 1.58 -64.96 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.99 Total: 13.55 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 5.15 Total: -33.37 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.67 Total: -83.71 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.59 Total: -10.47 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.32 Total: 1.99 kcal Total: -66.54 1.58 -64.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.901 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds