Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42910 * 113.99853 * 2 1 4 4 C 1.50695 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.33384 * 122.54121 * 269.97577 * 4 3 2 6 6 S 1.75892 * 109.59609 * 179.77913 * 5 4 3 7 7 C 1.75883 * 90.96773 * 0.31576 * 6 5 4 8 8 C 1.50696 * 125.20529 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.47063 * 269.69766 * 8 7 6 10 10 C 1.36948 * 119.99560 * 269.99692 * 9 8 7 11 11 H 1.07993 * 119.99859 * 141.86635 * 10 9 8 12 12 C 1.38811 * 119.99918 * 321.86506 * 10 9 8 13 13 N 1.31614 * 119.99861 * 156.82450 * 12 10 9 14 14 Si 1.86807 * 120.00217 * 336.82698 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.27404 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.27979 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.27269 * 14 12 10 18 18 C 1.46500 * 120.00298 * 89.99668 * 9 8 7 19 19 C 1.54964 * 110.92200 * 131.18468 * 18 9 8 20 20 C 1.54268 * 104.15816 * 156.29543 * 19 18 9 21 21 C 1.53875 * 106.63887 * 336.44189 * 20 19 18 22 22 C 1.54262 * 106.59957 * 359.97438 * 21 20 19 23 23 C 1.33396 * 109.59541 * 359.68388 * 7 6 5 24 24 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47382 * 299.99916 * 1 2 3 26 26 H 1.09001 * 109.47195 * 60.00173 * 1 2 3 27 27 H 1.08996 * 109.47191 * 59.99988 * 3 2 1 28 28 H 1.08995 * 109.46649 * 300.00145 * 3 2 1 29 29 H 1.08002 * 125.20656 * 0.05860 * 5 4 3 30 30 H 1.08999 * 109.47662 * 149.69020 * 8 7 6 31 31 H 1.09006 * 109.46913 * 29.69151 * 8 7 6 32 32 H 0.97001 * 119.99995 * 179.97438 * 13 12 10 33 33 H 1.08989 * 110.67199 * 7.87706 * 18 9 8 34 34 H 1.09000 * 110.47541 * 37.64199 * 19 18 9 35 35 H 1.09000 * 110.52920 * 274.97519 * 19 18 9 36 36 H 1.08999 * 110.03025 * 217.13687 * 20 19 18 37 37 H 1.08992 * 110.03146 * 95.75757 * 20 19 18 38 38 H 1.09002 * 110.02624 * 119.26340 * 21 20 19 39 39 H 1.09003 * 110.03478 * 240.64147 * 21 20 19 40 40 H 1.09000 * 110.48775 * 142.28368 * 22 21 20 41 41 H 1.08996 * 110.48570 * 264.79353 * 22 21 20 42 42 H 1.07998 * 122.53820 * 180.26514 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2272 1.1306 1.1254 6 16 5.9357 0.9887 0.7321 7 6 5.5731 1.0237 -0.9886 8 6 6.5946 0.9418 -2.0936 9 7 7.0348 2.2922 -2.4527 10 6 6.3737 2.9914 -3.4270 11 1 6.2194 4.0547 -3.3182 12 6 5.9018 2.3334 -4.5545 13 7 4.9101 2.8482 -5.2501 14 14 6.6742 0.7172 -5.0846 15 1 5.8831 -0.4131 -4.5358 16 1 6.6879 0.6380 -6.5674 17 1 8.0661 0.6423 -4.5721 18 6 8.1823 2.8945 -1.7695 19 6 9.1829 3.4924 -2.7907 20 6 9.9467 4.5649 -1.9868 21 6 9.0331 4.9733 -0.8179 22 6 7.7450 4.1352 -0.9518 23 6 4.2551 1.1276 -1.1660 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.8191 1.1626 2.1248 30 1 6.1498 0.4609 -2.9647 31 1 7.4508 0.3587 -1.7543 32 1 4.5806 2.3886 -6.0382 33 1 8.6756 2.1638 -1.1288 34 1 8.6497 3.9485 -3.6247 35 1 9.8682 2.7242 -3.1490 36 1 10.1530 5.4287 -2.6188 37 1 10.8798 4.1511 -1.6047 38 1 9.5226 4.7567 0.1317 39 1 8.7968 6.0354 -0.8821 40 1 7.3810 3.8353 0.0309 41 1 6.9786 4.6964 -1.4865 42 1 3.8018 1.1627 -2.1457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597012791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = 3.237603 kcal Electronic energy + Delta-G solvation = -22156.267085 eV Core-core repulsion = 19035.548337 eV Total energy + Delta-G solvation = -3120.718748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.51955 -37.86907 -36.66053 -34.61021 -31.73254 -30.27195 -27.96121 -27.73569 -26.86896 -25.67988 -25.46912 -22.79338 -21.03004 -19.62278 -19.33225 -18.42358 -17.14061 -16.28891 -16.21247 -15.60469 -15.39415 -15.17065 -15.06104 -14.49249 -13.69515 -13.30841 -12.99321 -12.83347 -12.59825 -12.54435 -12.22067 -12.17917 -11.71112 -11.59139 -11.49152 -11.09452 -10.93290 -10.73863 -10.63415 -10.47337 -10.39760 -10.36011 -9.96161 -9.84983 -9.73654 -9.58476 -9.51090 -8.53120 -8.01471 -7.87657 -6.86177 -6.05193 -3.44854 1.53887 2.19053 2.55402 3.14039 3.28726 3.45135 3.48890 4.23654 4.47681 4.93124 5.18047 5.19580 5.22311 5.33938 5.34738 5.38554 5.45448 5.57241 5.59699 5.62388 5.66213 5.95295 5.97114 6.03348 6.13669 6.20082 6.25255 6.30644 6.37623 6.44250 6.48712 6.55131 6.69354 6.82477 6.97534 7.02560 7.06800 7.12681 7.18706 7.24785 8.00276 8.37030 8.93452 9.65925 10.06117 11.09569 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.006021 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.267876 B = 4649.654123 C = 5881.209503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.124 3.876 4 C -0.093 4.093 5 C -0.215 4.215 6 S 0.063 5.937 7 C -0.147 4.147 8 C 0.196 3.804 9 N -0.584 5.584 10 C -0.258 4.258 11 H 0.081 0.919 12 C 0.042 3.958 13 N -0.892 5.892 14 Si 0.863 3.137 15 H -0.283 1.283 16 H -0.299 1.299 17 H -0.266 1.266 18 C 0.174 3.826 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.125 4.125 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -2.212 11.229 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.107 4.107 5 C -0.351 4.351 6 S 0.327 5.673 7 C -0.267 4.267 8 C 0.068 3.932 9 N -0.302 5.302 10 C -0.386 4.386 11 H 0.098 0.902 12 C -0.160 4.160 13 N -0.532 5.532 14 Si 0.692 3.308 15 H -0.211 1.211 16 H -0.227 1.227 17 H -0.190 1.190 18 C 0.067 3.933 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.175 4.175 23 C -0.154 4.154 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.171 0.829 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.961 -2.484 11.896 12.191 hybrid contribution -1.314 -0.431 -1.132 1.787 sum -0.353 -2.915 10.764 11.157 Atomic orbital electron populations 1.22719 0.81540 1.02470 0.99857 1.87979 1.19114 1.27983 1.95374 1.21038 0.89313 0.84533 1.00608 1.18548 0.94682 1.04695 0.92762 1.25185 0.96166 1.12261 1.01461 1.83923 1.06664 1.73693 1.03037 1.25828 0.99145 1.05827 0.95886 1.19964 0.92506 0.88481 0.92266 1.44189 1.30499 1.14484 1.41074 1.18596 1.30498 0.94257 0.95279 0.90196 1.25435 0.96848 0.97441 0.96237 1.69882 1.23679 1.40511 1.19107 0.87123 0.81485 0.84869 0.77277 1.21126 1.22726 1.19020 1.21408 0.86982 0.92818 0.92124 1.22688 0.97447 0.97141 0.99747 1.22059 0.97860 0.98883 0.97130 1.22050 0.96796 0.99401 0.97632 1.22761 0.96808 0.98043 0.99862 1.19911 0.92715 1.03868 0.98951 0.89870 0.94372 0.93987 0.92937 0.92047 0.82870 0.90753 0.93107 0.92655 0.92722 0.89633 0.93147 0.92675 0.93012 0.92959 0.92793 0.92919 0.90885 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.39 -6.00 10.69 -35.23 -0.38 -6.37 16 3 C 0.12 1.89 6.19 36.00 0.22 2.11 16 4 C -0.09 -1.65 5.43 -106.25 -0.58 -2.23 16 5 C -0.21 -3.47 10.98 29.04 0.32 -3.15 16 6 S 0.06 1.06 23.33 -107.50 -2.51 -1.45 16 7 C -0.15 -2.95 6.09 -36.00 -0.22 -3.17 16 8 C 0.20 4.20 5.01 -5.19 -0.03 4.18 16 9 N -0.58 -13.12 2.11 -164.72 -0.35 -13.46 16 10 C -0.26 -6.71 8.11 -15.05 -0.12 -6.83 16 11 H 0.08 2.29 7.14 -52.49 -0.37 1.91 16 12 C 0.04 1.14 5.28 -17.43 -0.09 1.04 16 13 N -0.89 -25.95 13.97 55.49 0.78 -25.17 16 14 Si 0.86 21.22 25.14 -169.99 -4.27 16.95 16 15 H -0.28 -6.86 6.66 56.52 0.38 -6.48 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.17 3.37 3.43 -65.89 -0.23 3.14 16 19 C -0.13 -2.44 6.32 -25.03 -0.16 -2.59 16 20 C -0.12 -1.85 6.80 -25.61 -0.17 -2.03 16 21 C -0.12 -1.83 6.80 -25.61 -0.17 -2.01 16 22 C -0.14 -2.45 6.41 -25.07 -0.16 -2.61 16 23 C -0.13 -2.56 9.85 -41.20 -0.41 -2.97 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 29 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.07 1.74 3.41 -51.93 -0.18 1.56 16 31 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.05 1.00 7.83 -51.94 -0.41 0.59 16 34 H 0.09 1.81 6.97 -51.93 -0.36 1.45 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.51 6.89 -51.93 -0.36 1.16 16 42 H 0.14 3.12 8.06 -52.49 -0.42 2.69 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -28.67 347.91 -8.91 -37.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.74 Total: 2.35 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.68 Total: -15.67 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.43 Total: -38.64 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.27 Total: 16.95 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.67 -8.91 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.821 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds