Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42910 * 113.99853 * 2 1 4 4 C 1.50695 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.33384 * 122.54121 * 269.97577 * 4 3 2 6 6 S 1.75892 * 109.59609 * 179.77913 * 5 4 3 7 7 C 1.75883 * 90.96773 * 0.31576 * 6 5 4 8 8 C 1.50696 * 125.20529 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.47063 * 269.69766 * 8 7 6 10 10 C 1.36948 * 119.99560 * 269.99692 * 9 8 7 11 11 H 1.07993 * 119.99859 * 141.86635 * 10 9 8 12 12 C 1.38811 * 119.99918 * 321.86506 * 10 9 8 13 13 N 1.31614 * 119.99861 * 156.82450 * 12 10 9 14 14 Si 1.86807 * 120.00217 * 336.82698 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.27404 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.27979 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.27269 * 14 12 10 18 18 C 1.46500 * 120.00298 * 89.99668 * 9 8 7 19 19 C 1.54964 * 110.92200 * 131.18468 * 18 9 8 20 20 C 1.54268 * 104.15816 * 156.29543 * 19 18 9 21 21 C 1.53875 * 106.63887 * 336.44189 * 20 19 18 22 22 C 1.54262 * 106.59957 * 359.97438 * 21 20 19 23 23 C 1.33396 * 109.59541 * 359.68388 * 7 6 5 24 24 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47382 * 299.99916 * 1 2 3 26 26 H 1.09001 * 109.47195 * 60.00173 * 1 2 3 27 27 H 1.08996 * 109.47191 * 59.99988 * 3 2 1 28 28 H 1.08995 * 109.46649 * 300.00145 * 3 2 1 29 29 H 1.08002 * 125.20656 * 0.05860 * 5 4 3 30 30 H 1.08999 * 109.47662 * 149.69020 * 8 7 6 31 31 H 1.09006 * 109.46913 * 29.69151 * 8 7 6 32 32 H 0.97001 * 119.99995 * 179.97438 * 13 12 10 33 33 H 1.08989 * 110.67199 * 7.87706 * 18 9 8 34 34 H 1.09000 * 110.47541 * 37.64199 * 19 18 9 35 35 H 1.09000 * 110.52920 * 274.97519 * 19 18 9 36 36 H 1.08999 * 110.03025 * 217.13687 * 20 19 18 37 37 H 1.08992 * 110.03146 * 95.75757 * 20 19 18 38 38 H 1.09002 * 110.02624 * 119.26340 * 21 20 19 39 39 H 1.09003 * 110.03478 * 240.64147 * 21 20 19 40 40 H 1.09000 * 110.48775 * 142.28368 * 22 21 20 41 41 H 1.08996 * 110.48570 * 264.79353 * 22 21 20 42 42 H 1.07998 * 122.53820 * 180.26514 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2272 1.1306 1.1254 6 16 5.9357 0.9887 0.7321 7 6 5.5731 1.0237 -0.9886 8 6 6.5946 0.9418 -2.0936 9 7 7.0348 2.2922 -2.4527 10 6 6.3737 2.9914 -3.4270 11 1 6.2194 4.0547 -3.3182 12 6 5.9018 2.3334 -4.5545 13 7 4.9101 2.8482 -5.2501 14 14 6.6742 0.7172 -5.0846 15 1 5.8831 -0.4131 -4.5358 16 1 6.6879 0.6380 -6.5674 17 1 8.0661 0.6423 -4.5721 18 6 8.1823 2.8945 -1.7695 19 6 9.1829 3.4924 -2.7907 20 6 9.9467 4.5649 -1.9868 21 6 9.0331 4.9733 -0.8179 22 6 7.7450 4.1352 -0.9518 23 6 4.2551 1.1276 -1.1660 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.8191 1.1626 2.1248 30 1 6.1498 0.4609 -2.9647 31 1 7.4508 0.3587 -1.7543 32 1 4.5806 2.3886 -6.0382 33 1 8.6756 2.1638 -1.1288 34 1 8.6497 3.9485 -3.6247 35 1 9.8682 2.7242 -3.1490 36 1 10.1530 5.4287 -2.6188 37 1 10.8798 4.1511 -1.6047 38 1 9.5226 4.7567 0.1317 39 1 8.7968 6.0354 -0.8821 40 1 7.3810 3.8353 0.0309 41 1 6.9786 4.6964 -1.4865 42 1 3.8018 1.1627 -2.1457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = -12.566651 kcal Electronic energy + Delta-G solvation = -22156.952409 eV Core-core repulsion = 19035.548337 eV Total energy + Delta-G solvation = -3121.404072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89153 -39.31230 -37.93848 -36.23681 -33.71827 -31.77521 -29.37170 -28.93755 -28.34043 -27.42037 -26.53873 -24.52621 -22.53043 -21.07513 -20.87696 -19.87076 -18.76899 -17.83110 -17.36995 -17.24719 -16.92730 -16.60922 -16.22185 -16.01304 -15.08326 -14.91059 -14.74959 -14.41110 -14.08351 -13.90651 -13.76430 -13.59379 -13.20849 -12.98122 -12.87250 -12.69634 -12.41198 -12.27659 -12.15099 -11.92901 -11.89056 -11.79005 -11.71238 -11.45884 -11.21510 -11.11773 -10.66028 -10.59142 -9.48866 -9.22893 -8.72738 -8.17923 -5.53987 0.12784 0.80177 1.11357 1.28516 1.39478 1.49167 1.70051 2.41917 3.05229 3.15846 3.35600 3.88585 3.99570 4.01748 4.07008 4.21553 4.29193 4.35991 4.40568 4.50243 4.55042 4.57899 4.59167 4.67041 4.76854 4.80896 4.83375 4.86552 4.91680 4.99783 5.16046 5.23239 5.30867 5.34938 5.51114 5.55507 5.58306 5.65350 5.67379 5.98455 6.20084 6.24692 7.00164 7.64863 8.06849 9.01354 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.006021 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.267876 B = 4649.654123 C = 5881.209503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.127 3.873 4 C -0.117 4.117 5 C -0.198 4.198 6 S 0.123 5.877 7 C -0.179 4.179 8 C 0.193 3.807 9 N -0.593 5.593 10 C -0.229 4.229 11 H 0.041 0.959 12 C -0.011 4.011 13 N -0.942 5.942 14 Si 0.920 3.080 15 H -0.281 1.281 16 H -0.310 1.310 17 H -0.252 1.252 18 C 0.165 3.835 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.140 4.140 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.191 0.809 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.260 0.740 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -2.993 14.737 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.048 3.952 4 C -0.130 4.130 5 C -0.334 4.334 6 S 0.387 5.613 7 C -0.299 4.299 8 C 0.066 3.934 9 N -0.313 5.313 10 C -0.359 4.359 11 H 0.059 0.941 12 C -0.207 4.207 13 N -0.586 5.586 14 Si 0.750 3.250 15 H -0.209 1.209 16 H -0.238 1.238 17 H -0.176 1.176 18 C 0.059 3.941 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.169 4.169 23 C -0.170 4.170 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.208 0.792 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.511 -3.277 15.443 15.985 hybrid contribution -1.838 -0.176 -2.071 2.775 sum 0.673 -3.453 13.372 13.827 Atomic orbital electron populations 1.22954 0.79374 1.03899 1.00958 1.87925 1.21534 1.28092 1.95582 1.21012 0.87975 0.84783 1.01390 1.18680 0.96196 1.05907 0.92169 1.25659 0.95901 1.09328 1.02526 1.83585 1.06490 1.72504 0.98744 1.25608 0.98634 1.07140 0.98538 1.19886 0.93616 0.87724 0.92175 1.44256 1.31586 1.14595 1.40831 1.18308 1.28948 0.92814 0.95832 0.94094 1.25909 0.97490 1.00589 0.96732 1.69998 1.25858 1.42576 1.20165 0.86185 0.81186 0.81686 0.75985 1.20870 1.23844 1.17585 1.21677 0.86225 0.93646 0.92535 1.22643 0.97456 0.98219 0.98865 1.22026 0.98413 0.97994 0.96695 1.22030 0.95065 0.99129 0.98934 1.22642 0.97488 0.97578 0.99218 1.19902 0.93580 1.04821 0.98688 0.88358 0.92191 0.93931 0.89993 0.93373 0.79188 0.93332 0.90642 0.93082 0.90442 0.93407 0.92576 0.92146 0.90231 0.90142 0.92224 0.92234 0.94726 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -12.38 10.69 -148.98 -1.59 -13.97 16 3 C 0.13 3.76 6.19 71.23 0.44 4.20 16 4 C -0.12 -4.03 5.43 -20.92 -0.11 -4.15 16 5 C -0.20 -5.78 10.98 66.72 0.73 -5.04 16 6 S 0.12 3.74 23.33 -56.49 -1.32 2.42 16 7 C -0.18 -7.15 6.09 24.59 0.15 -7.00 16 8 C 0.19 8.26 5.01 85.63 0.43 8.69 16 9 N -0.59 -26.93 2.11 -675.04 -1.42 -28.35 16 10 C -0.23 -12.53 8.11 84.03 0.68 -11.85 16 11 H 0.04 2.54 7.14 -2.91 -0.02 2.52 16 12 C -0.01 -0.60 5.28 84.86 0.45 -0.16 16 13 N -0.94 -58.31 13.97 21.65 0.30 -58.00 16 14 Si 0.92 45.71 25.14 68.60 1.72 47.43 16 15 H -0.28 -13.67 6.66 99.48 0.66 -13.01 16 16 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 17 H -0.25 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.16 6.19 3.43 46.31 0.16 6.35 16 19 C -0.13 -4.80 6.32 31.70 0.20 -4.60 16 20 C -0.11 -3.14 6.80 31.32 0.21 -2.93 16 21 C -0.11 -3.12 6.80 31.32 0.21 -2.90 16 22 C -0.13 -4.56 6.41 31.67 0.20 -4.36 16 23 C -0.14 -5.86 9.85 21.22 0.21 -5.65 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 28 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.05 2.32 3.41 -2.39 -0.01 2.31 16 31 H 0.08 2.79 7.90 -2.38 -0.02 2.77 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.08 2.58 7.83 -2.39 -0.02 2.56 16 34 H 0.05 2.08 6.97 -2.39 -0.02 2.06 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.47 6.89 -2.39 -0.02 1.45 16 42 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -66.25 347.91 3.85 -62.40 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.95 Total: 15.73 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 5.21 Total: -27.67 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.12 Total: -86.36 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.59 Total: -13.97 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.72 Total: 47.43 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.32 Total: 2.42 kcal Total: -66.25 3.85 -62.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.832 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds