Wall clock time and date at job start Tue Mar 31 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34729 * 117.00435 * 2 1 4 4 O 1.21484 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.47558 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.17390 * 0.02725 * 5 3 2 7 7 C 1.37833 * 119.87007 * 179.74296 * 6 5 3 8 8 C 1.38473 * 120.22928 * 0.48806 * 7 6 5 9 9 C 1.50697 * 119.82752 * 179.76446 * 8 7 6 10 10 N 1.46905 * 109.47066 * 269.72436 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46424 * 90.00488 * 18 16 14 20 20 H 1.48498 * 109.46986 * 210.00365 * 18 16 14 21 21 H 1.48503 * 109.47043 * 330.00844 * 18 16 14 22 22 C 1.38209 * 120.34760 * 359.48780 * 8 7 6 23 23 C 1.38311 * 120.12261 * 0.27682 * 22 8 7 24 24 F 1.35106 * 120.11303 * 180.02562 * 23 22 8 25 25 H 1.08992 * 109.47113 * 300.00086 * 1 2 3 26 26 H 1.09005 * 109.46459 * 59.99670 * 1 2 3 27 27 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.06076 * 359.97438 * 6 5 3 29 29 H 1.08004 * 119.88811 * 180.24726 * 7 6 5 30 30 H 1.09001 * 109.47558 * 149.72599 * 9 8 7 31 31 H 1.08998 * 109.47216 * 29.72261 * 9 8 7 32 32 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 33 33 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 34 34 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 35 35 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 36 36 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 37 37 H 1.08993 * 109.47740 * 299.99810 * 13 12 11 38 38 H 1.09005 * 109.47573 * 59.99976 * 13 12 11 39 39 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.93587 * 180.25750 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5373 1.2775 0.0006 6 6 4.3018 0.1080 0.0005 7 6 5.6778 0.1873 -0.0043 8 6 6.3050 1.4219 0.0011 9 6 7.8100 1.4980 0.0011 10 7 8.2990 1.5233 1.3862 11 6 9.7656 1.5981 1.4254 12 6 10.2363 1.6218 2.8810 13 6 11.7638 1.6991 2.9218 14 6 12.2274 1.7230 4.3555 15 1 11.5048 1.6863 5.1574 16 6 13.5740 1.7907 4.6436 17 7 14.4540 1.8349 3.6672 18 14 14.1488 1.8197 6.4208 19 1 14.3714 0.4290 6.8916 20 1 15.4179 2.5845 6.5182 21 1 13.1137 2.4684 7.2652 22 6 5.5579 2.5846 0.0007 23 6 4.1762 2.5219 0.0006 24 9 3.4461 3.6587 -0.0003 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8154 -0.8563 0.0005 29 1 6.2690 -0.7165 -0.0084 30 1 8.1280 2.4051 -0.5130 31 1 8.2179 0.6274 -0.5124 32 1 7.9635 0.7241 1.9027 33 1 10.1874 0.7283 0.9216 34 1 10.0967 2.5060 0.9212 35 1 9.8145 2.4913 3.3851 36 1 9.9053 0.7136 3.3847 37 1 12.1852 0.8294 2.4178 38 1 12.0953 2.6071 2.4179 39 1 15.4014 1.8830 3.8698 40 1 6.0540 3.5440 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597055249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:01 Heat of formation + Delta-G solvation = -118.935967 kcal Electronic energy + Delta-G solvation = -22092.030345 eV Core-core repulsion = 18399.800577 eV Total energy + Delta-G solvation = -3692.229768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16473 -40.80761 -39.38033 -36.80835 -36.42091 -33.84214 -32.43536 -31.11244 -30.62911 -28.36556 -26.98943 -25.18877 -23.20351 -22.93496 -22.18597 -21.18302 -20.16126 -18.45483 -17.64903 -17.07455 -16.80709 -16.55677 -16.26843 -15.79539 -15.65280 -15.06040 -14.73678 -14.53013 -14.26618 -13.99169 -13.73445 -13.68958 -13.46724 -12.67188 -12.59313 -12.45353 -12.25936 -12.10838 -11.67138 -11.50943 -11.43680 -11.19219 -10.86387 -10.81759 -10.61934 -10.52300 -9.73562 -9.54562 -9.31797 -9.14721 -9.06204 -8.35917 -8.32611 -6.00616 -4.02726 0.16255 0.81467 2.11724 2.23582 3.19263 3.31825 3.38126 3.42017 3.75143 4.12286 4.28451 4.38544 4.45856 4.57218 4.71241 4.76717 4.79860 4.84805 5.10747 5.13650 5.26453 5.35295 5.49137 5.55921 5.64220 5.71009 5.72513 5.81192 5.93831 6.09970 6.24831 6.37749 6.64699 6.68069 7.09279 7.17968 7.34191 7.46549 7.66763 7.80877 7.99419 8.42544 9.04400 9.61394 11.10733 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030755 B = 0.002101 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.215098 B =13324.868034 C =13428.053951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.495 6.495 5 C -0.173 4.173 6 C -0.033 4.033 7 C -0.140 4.140 8 C -0.008 4.008 9 C 0.087 3.913 10 N -0.685 5.685 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.146 4.146 23 C 0.166 3.834 24 F -0.115 7.115 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.341 0.659 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.649 -5.445 -11.663 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.353 3.647 4 O -0.383 6.383 5 C -0.175 4.175 6 C -0.051 4.051 7 C -0.159 4.159 8 C -0.009 4.009 9 C -0.041 4.041 10 N -0.317 5.317 11 C -0.069 4.069 12 C -0.146 4.146 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.165 4.165 23 C 0.146 3.854 24 F -0.093 7.093 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.165 0.835 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.797 -4.403 -11.632 27.741 hybrid contribution 0.307 -0.627 0.706 0.993 sum -24.490 -5.030 -10.926 27.284 Atomic orbital electron populations 1.23305 0.75650 1.03888 1.02791 1.86523 1.23777 1.32353 1.84495 1.20909 0.88679 0.81748 0.73318 1.90905 1.66585 1.35770 1.45074 1.19107 0.89951 0.93852 1.14622 1.21312 0.93531 0.97337 0.92898 1.21168 0.94229 0.97971 1.02482 1.20057 0.96379 0.92088 0.92347 1.21034 0.88669 1.02372 0.92065 1.60615 1.11769 1.48515 1.10759 1.22183 0.84469 1.00321 0.99952 1.21633 0.99674 1.00847 0.92396 1.19068 0.88313 0.97144 0.97054 1.21251 0.91758 1.50253 0.92490 0.92654 1.25036 0.96982 0.95374 0.97174 1.69961 1.01471 1.50857 1.31291 0.86590 0.78169 0.78011 0.85217 1.20703 1.21236 1.19846 1.21059 0.90656 1.00802 1.03978 1.17679 0.89246 0.80931 0.97571 1.91605 1.77220 1.47835 1.92686 0.91681 0.91748 0.87779 0.83494 0.84360 0.89460 0.93512 0.84153 0.95428 0.91191 0.92449 0.93572 0.96779 0.96531 0.93027 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.24 9.82 -40.57 -0.40 -3.64 16 3 C 0.51 5.87 7.89 34.53 0.27 6.14 16 4 O -0.50 -7.09 15.13 -19.25 -0.29 -7.38 16 5 C -0.17 -1.84 5.88 -104.93 -0.62 -2.46 16 6 C -0.03 -0.27 9.62 -39.17 -0.38 -0.64 16 7 C -0.14 -1.11 9.67 -39.64 -0.38 -1.50 16 8 C -0.01 -0.07 5.40 -104.55 -0.56 -0.64 16 9 C 0.09 0.88 5.80 -4.97 -0.03 0.85 16 10 N -0.69 -8.87 6.49 -115.05 -0.75 -9.62 16 11 C 0.06 0.93 5.69 -3.82 -0.02 0.91 16 12 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.15 -1.49 9.66 -39.57 -0.38 -1.87 16 23 C 0.17 1.91 7.29 -38.94 -0.28 1.63 16 24 F -0.12 -1.55 15.55 2.25 0.04 -1.52 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.15 0.88 7.61 -52.49 -0.40 0.48 16 29 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.34 4.13 8.72 -39.29 -0.34 3.78 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -32.68 351.48 -8.17 -40.86 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.77 Total: -2.90 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.01 Total: -11.63 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.01 Total: -35.71 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.69 Total: -11.01 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.68 -8.17 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597055249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.079 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds