Wall clock time and date at job start Tue Mar 31 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34729 * 117.00435 * 2 1 4 4 O 1.21484 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.47558 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.17390 * 0.02725 * 5 3 2 7 7 C 1.37833 * 119.87007 * 179.74296 * 6 5 3 8 8 C 1.38473 * 120.22928 * 0.48806 * 7 6 5 9 9 C 1.50697 * 119.82752 * 179.76446 * 8 7 6 10 10 N 1.46905 * 109.47066 * 269.72436 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46424 * 90.00488 * 18 16 14 20 20 H 1.48498 * 109.46986 * 210.00365 * 18 16 14 21 21 H 1.48503 * 109.47043 * 330.00844 * 18 16 14 22 22 C 1.38209 * 120.34760 * 359.48780 * 8 7 6 23 23 C 1.38311 * 120.12261 * 0.27682 * 22 8 7 24 24 F 1.35106 * 120.11303 * 180.02562 * 23 22 8 25 25 H 1.08992 * 109.47113 * 300.00086 * 1 2 3 26 26 H 1.09005 * 109.46459 * 59.99670 * 1 2 3 27 27 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.06076 * 359.97438 * 6 5 3 29 29 H 1.08004 * 119.88811 * 180.24726 * 7 6 5 30 30 H 1.09001 * 109.47558 * 149.72599 * 9 8 7 31 31 H 1.08998 * 109.47216 * 29.72261 * 9 8 7 32 32 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 33 33 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 34 34 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 35 35 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 36 36 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 37 37 H 1.08993 * 109.47740 * 299.99810 * 13 12 11 38 38 H 1.09005 * 109.47573 * 59.99976 * 13 12 11 39 39 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.93587 * 180.25750 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5373 1.2775 0.0006 6 6 4.3018 0.1080 0.0005 7 6 5.6778 0.1873 -0.0043 8 6 6.3050 1.4219 0.0011 9 6 7.8100 1.4980 0.0011 10 7 8.2990 1.5233 1.3862 11 6 9.7656 1.5981 1.4254 12 6 10.2363 1.6218 2.8810 13 6 11.7638 1.6991 2.9218 14 6 12.2274 1.7230 4.3555 15 1 11.5048 1.6863 5.1574 16 6 13.5740 1.7907 4.6436 17 7 14.4540 1.8349 3.6672 18 14 14.1488 1.8197 6.4208 19 1 14.3714 0.4290 6.8916 20 1 15.4179 2.5845 6.5182 21 1 13.1137 2.4684 7.2652 22 6 5.5579 2.5846 0.0007 23 6 4.1762 2.5219 0.0006 24 9 3.4461 3.6587 -0.0003 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8154 -0.8563 0.0005 29 1 6.2690 -0.7165 -0.0084 30 1 8.1280 2.4051 -0.5130 31 1 8.2179 0.6274 -0.5124 32 1 7.9635 0.7241 1.9027 33 1 10.1874 0.7283 0.9216 34 1 10.0967 2.5060 0.9212 35 1 9.8145 2.4913 3.3851 36 1 9.9053 0.7136 3.3847 37 1 12.1852 0.8294 2.4178 38 1 12.0953 2.6071 2.4179 39 1 15.4014 1.8830 3.8698 40 1 6.0540 3.5440 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597055249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:01 Heat of formation + Delta-G solvation = -138.710088 kcal Electronic energy + Delta-G solvation = -22092.887815 eV Core-core repulsion = 18399.800577 eV Total energy + Delta-G solvation = -3693.087238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07551 -41.61208 -40.14152 -37.71922 -37.50536 -35.56253 -33.84544 -32.25797 -31.63843 -29.21543 -28.21540 -26.50849 -24.26183 -23.92545 -23.33726 -22.07547 -21.73205 -19.22420 -18.54990 -18.39861 -17.87783 -17.58984 -17.33889 -16.71907 -16.65305 -16.54041 -15.90241 -15.60983 -15.44030 -14.84931 -14.74351 -14.44189 -14.41671 -14.28107 -13.76502 -13.45591 -13.21546 -13.11431 -13.03514 -12.84423 -12.60877 -12.48139 -12.30130 -12.21003 -11.88319 -11.68400 -11.49315 -11.36220 -11.09842 -10.53186 -10.20844 -9.90462 -9.34526 -8.18641 -6.29012 -0.62417 0.09760 1.29451 1.41285 1.42399 1.53112 1.53643 2.41422 2.44635 2.97116 3.14568 3.30127 3.47038 3.67436 3.76455 4.06643 4.12913 4.25640 4.27540 4.30653 4.34913 4.48701 4.58017 4.67619 4.75386 4.78203 4.87578 4.95999 5.01363 5.03738 5.15035 5.18891 5.27776 5.37292 5.54769 5.66000 5.79132 5.89104 6.01989 6.29347 6.48244 6.53025 6.88342 7.40050 8.92946 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030755 B = 0.002101 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.215098 B =13324.868034 C =13428.053951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.533 6.533 5 C -0.184 4.184 6 C -0.021 4.021 7 C -0.127 4.127 8 C -0.010 4.010 9 C 0.090 3.910 10 N -0.690 5.690 11 C 0.073 3.927 12 C -0.094 4.094 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.265 1.265 22 C -0.149 4.149 23 C 0.139 3.861 24 F -0.135 7.135 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.140 0.860 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.348 0.652 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.052 0.948 37 H -0.006 1.006 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.229 -7.370 -11.256 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.355 3.645 4 O -0.424 6.424 5 C -0.187 4.187 6 C -0.039 4.039 7 C -0.145 4.145 8 C -0.011 4.011 9 C -0.038 4.038 10 N -0.322 5.322 11 C -0.055 4.055 12 C -0.132 4.132 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.168 4.168 23 C 0.120 3.880 24 F -0.113 7.113 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.191 0.809 29 H 0.186 0.814 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.400 -6.353 -11.231 28.489 hybrid contribution 0.444 -0.090 0.539 0.704 sum -24.956 -6.443 -10.692 27.904 Atomic orbital electron populations 1.23628 0.74012 1.06164 1.02587 1.86514 1.25372 1.30896 1.83817 1.21156 0.89110 0.81874 0.72387 1.90883 1.67429 1.37079 1.47050 1.19279 0.89829 0.94410 1.15157 1.21599 0.93559 0.97407 0.91290 1.21486 0.94271 0.98338 1.00429 1.20041 0.95861 0.92417 0.92745 1.21046 0.88973 1.03384 0.90400 1.60473 1.09584 1.49246 1.12916 1.21841 0.86510 1.00383 0.96808 1.21381 0.95669 1.00726 0.95455 1.18982 0.92134 0.94903 0.95357 1.21717 0.92292 1.50134 0.93898 0.92356 1.25975 0.97217 0.94875 1.01899 1.70087 1.01860 1.51687 1.33659 0.85470 0.77709 0.78439 0.79571 1.19667 1.20819 1.18945 1.21124 0.90222 1.01480 1.03947 1.17958 0.89764 0.80862 0.99438 1.91548 1.77744 1.48918 1.93133 0.92070 0.91893 0.84212 0.80858 0.81436 0.89407 0.91547 0.83338 0.94892 0.91732 0.93230 0.92926 0.98747 0.99016 0.92815 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.86 9.82 -56.39 -0.55 -6.41 16 3 C 0.51 11.57 7.89 70.28 0.55 12.12 16 4 O -0.53 -15.71 15.13 19.89 0.30 -15.41 16 5 C -0.18 -3.76 5.88 -20.06 -0.12 -3.88 16 6 C -0.02 -0.28 9.62 22.53 0.22 -0.06 16 7 C -0.13 -1.58 9.67 22.23 0.22 -1.36 16 8 C -0.01 -0.16 5.40 -19.82 -0.11 -0.27 16 9 C 0.09 1.59 5.80 85.55 0.50 2.09 16 10 N -0.69 -16.38 6.49 -517.92 -3.36 -19.74 16 11 C 0.07 2.23 5.69 86.30 0.49 2.72 16 12 C -0.09 -3.71 5.41 30.59 0.17 -3.54 16 13 C 0.02 1.23 4.97 29.85 0.15 1.38 16 14 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.15 -2.94 9.66 22.28 0.22 -2.72 16 23 C 0.14 3.24 7.29 22.69 0.17 3.40 16 24 F -0.14 -3.83 15.55 44.97 0.70 -3.13 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.17 1.40 7.61 -2.91 -0.02 1.38 16 29 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 30 H 0.09 1.56 8.08 -2.39 -0.02 1.55 16 31 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.35 7.45 8.72 -89.69 -0.78 6.67 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -71.85 351.48 4.00 -67.86 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.26 Total: 5.57 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.34 Total: -18.79 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -3.08 Total: -75.87 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.25 Total: -21.82 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.70 Total: -3.13 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.85 4.00 -67.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597055249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.854 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds