Wall clock time and date at job start Tue Mar 31 2020 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 C 1.50707 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.33386 * 122.53763 * 90.01980 * 4 3 2 6 6 S 1.75891 * 109.59176 * 179.74980 * 5 4 3 7 7 C 1.75886 * 90.96733 * 0.23276 * 6 5 4 8 8 C 1.50705 * 125.20294 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46907 * 269.97629 * 8 7 6 10 10 C 1.46847 * 111.00097 * 45.78587 * 9 8 7 11 11 C 1.53046 * 109.52027 * 185.84263 * 10 9 8 12 12 C 1.53118 * 109.27645 * 300.81914 * 11 10 9 13 13 C 1.50696 * 109.57000 * 177.59127 * 12 11 10 14 14 H 1.08002 * 120.00120 * 240.28503 * 13 12 11 15 15 C 1.37876 * 120.00222 * 60.28975 * 13 12 11 16 16 N 1.31513 * 119.99759 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46979 * 60.00147 * 17 15 13 19 19 H 1.48507 * 109.47014 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47352 * 299.99657 * 17 15 13 21 21 C 1.53121 * 109.16058 * 57.65927 * 12 11 10 22 22 C 1.46841 * 111.00033 * 170.00044 * 9 8 7 23 23 C 1.33384 * 109.59693 * 359.97438 * 7 6 5 24 24 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46683 * 299.99964 * 1 2 3 26 26 H 1.08991 * 109.47361 * 60.00051 * 1 2 3 27 27 H 1.08996 * 109.47654 * 60.00166 * 3 2 1 28 28 H 1.08999 * 109.47193 * 299.99397 * 3 2 1 29 29 H 1.08002 * 125.20849 * 0.02562 * 5 4 3 30 30 H 1.09004 * 109.46819 * 29.96712 * 8 7 6 31 31 H 1.08992 * 109.47494 * 149.97165 * 8 7 6 32 32 H 1.09003 * 109.46620 * 305.85406 * 10 9 8 33 33 H 1.08998 * 109.46449 * 65.82792 * 10 9 8 34 34 H 1.09005 * 109.49964 * 180.87893 * 11 10 9 35 35 H 1.08997 * 109.53580 * 60.78076 * 11 10 9 36 36 H 1.08996 * 109.52155 * 297.75202 * 12 11 10 37 37 H 0.97006 * 120.00255 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.50145 * 182.40465 * 21 12 11 39 39 H 1.08992 * 109.53812 * 62.30140 * 21 12 11 40 40 H 1.09004 * 109.45992 * 294.17170 * 22 9 8 41 41 H 1.08992 * 109.46628 * 54.14820 * 22 9 8 42 42 H 1.07997 * 122.54195 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2273 1.1304 -1.1254 6 16 5.9369 1.0020 -0.7321 7 6 5.5733 1.0255 0.9886 8 6 6.5951 0.9474 2.0936 9 7 6.8242 -0.4591 2.4502 10 6 6.9901 -1.2864 1.2484 11 6 7.0806 -2.7603 1.6506 12 6 8.2702 -2.9545 2.5948 13 6 8.3304 -4.3923 3.0420 14 1 8.2528 -4.6351 4.0915 15 6 8.4845 -5.3978 2.1113 16 7 8.5785 -5.1022 0.8333 17 14 8.5597 -7.1801 2.6657 18 1 7.3009 -7.5330 3.3700 19 1 8.7272 -8.0602 1.4813 20 1 9.7103 -7.3640 3.5863 21 6 8.0968 -2.0459 3.8151 22 6 7.9768 -0.5928 3.3502 23 6 4.2550 1.1240 1.1660 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8193 1.1636 -2.1248 30 1 7.5305 1.3935 1.7556 31 1 6.2289 1.4885 2.9660 32 1 6.1354 -1.1423 0.5873 33 1 7.9034 -0.9948 0.7298 34 1 7.2193 -3.3728 0.7597 35 1 6.1620 -3.0570 2.1568 36 1 9.1931 -2.6954 2.0760 37 1 8.6865 -5.8096 0.1785 38 1 8.9617 -2.1480 4.4706 39 1 7.1945 -2.3305 4.3562 40 1 8.8855 -0.3043 2.8217 41 1 7.8389 0.0551 4.2157 42 1 3.8014 1.1555 2.1456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597081432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:19 Heat of formation + Delta-G solvation = -31.524033 kcal Electronic energy + Delta-G solvation = -21603.437092 eV Core-core repulsion = 18481.210966 eV Total energy + Delta-G solvation = -3122.226126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23348 -39.46231 -37.90657 -35.87328 -33.68000 -31.59045 -31.31712 -28.79682 -27.96332 -26.57106 -26.06933 -24.01091 -23.44347 -21.92718 -20.47827 -19.76491 -18.47191 -18.20801 -17.34536 -16.99025 -16.74404 -16.33076 -16.22722 -15.78940 -15.25952 -14.99387 -14.69978 -14.40660 -14.18105 -13.95239 -13.65725 -13.52735 -13.23385 -12.96906 -12.81704 -12.74989 -12.64532 -12.48987 -12.27516 -12.10765 -12.01075 -11.86961 -11.62885 -11.33837 -10.80981 -10.67651 -10.60478 -10.37735 -9.68821 -9.33184 -9.14181 -8.06855 -6.20689 -0.00414 0.66907 1.03137 1.41224 1.43243 1.50563 1.60423 2.44457 3.12062 3.19442 3.20635 3.69971 4.05155 4.16042 4.19917 4.26868 4.31511 4.35167 4.42886 4.51753 4.53210 4.58970 4.59304 4.69570 4.74760 4.78082 4.89515 4.89590 4.97167 5.08341 5.21090 5.23904 5.32351 5.41506 5.52936 5.57014 5.62509 5.99036 6.00772 6.23573 6.27268 6.30618 6.41020 6.90959 7.47065 8.97601 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.003944 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.351106 B = 7098.270697 C = 7859.065626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.124 3.876 4 C -0.119 4.119 5 C -0.192 4.192 6 S 0.083 5.917 7 C -0.183 4.183 8 C 0.125 3.875 9 N -0.536 5.536 10 C 0.071 3.929 11 C -0.092 4.092 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.099 4.099 22 C 0.065 3.935 23 C -0.110 4.110 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.010 0.990 34 H 0.058 0.942 35 H 0.025 0.975 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.023 0.977 41 H 0.096 0.904 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 17.513 -2.223 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.045 3.955 4 C -0.132 4.132 5 C -0.328 4.328 6 S 0.348 5.652 7 C -0.300 4.300 8 C -0.003 4.003 9 N -0.261 5.261 10 C -0.057 4.057 11 C -0.131 4.131 12 C 0.026 3.974 13 C -0.573 4.573 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.137 4.137 22 C -0.062 4.062 23 C -0.140 4.140 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.201 0.799 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.114 0.886 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.589 17.011 -3.006 20.802 hybrid contribution -0.435 -0.786 0.250 0.933 sum -12.024 16.225 -2.755 20.382 Atomic orbital electron populations 1.22923 0.79330 1.03571 1.01214 1.87983 1.21539 1.28640 1.95638 1.21114 0.87264 0.84716 1.02357 1.18841 0.96625 1.05550 0.92157 1.25788 0.95453 1.08189 1.03328 1.84520 1.07429 1.72310 1.00930 1.24366 0.98507 1.10365 0.96764 1.20689 0.94855 0.89555 0.95244 1.62144 1.40932 1.07125 1.15933 1.22102 0.98146 0.94248 0.91247 1.21398 0.97888 0.93132 1.00675 1.18651 0.92707 0.93505 0.92510 1.21574 1.49652 0.92899 0.93191 0.92957 1.25762 0.94848 1.03059 0.95001 1.70024 1.50825 1.33579 1.01370 0.85687 0.78800 0.79933 0.77688 1.19754 1.20965 1.19502 1.21539 1.00323 0.93748 0.98093 1.22101 0.90176 0.97619 0.96317 1.20111 0.92000 1.01875 1.00048 0.89402 0.92772 0.92524 0.90821 0.90554 0.79864 0.93757 0.86838 0.91514 0.97183 0.92390 0.95569 0.99444 0.93136 0.92437 0.92980 0.95875 0.88562 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.06 10.69 -148.98 -1.59 -11.65 16 3 C 0.12 2.37 6.19 71.24 0.44 2.81 16 4 C -0.12 -2.86 5.43 -20.92 -0.11 -2.97 16 5 C -0.19 -4.52 10.98 66.72 0.73 -3.79 16 6 S 0.08 2.24 21.73 -56.49 -1.23 1.01 16 7 C -0.18 -5.12 4.44 24.59 0.11 -5.01 16 8 C 0.13 3.49 5.77 85.56 0.49 3.98 16 9 N -0.54 -19.16 4.80 -900.91 -4.32 -23.48 16 10 C 0.07 2.98 4.70 86.33 0.41 3.39 16 11 C -0.09 -4.74 5.12 30.65 0.16 -4.58 16 12 C 0.04 2.36 2.16 -11.46 -0.02 2.33 16 13 C -0.54 -30.73 8.56 25.60 0.22 -30.51 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.67 5.31 84.65 0.45 1.12 16 16 N -0.92 -55.06 11.37 21.45 0.24 -54.82 16 17 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 22 C 0.07 2.28 5.42 86.33 0.47 2.74 16 23 C -0.11 -2.86 9.85 21.22 0.21 -2.65 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.04 1.19 8.08 -2.38 -0.02 1.17 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.75 5.53 -2.39 -0.01 2.74 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 3.34 6.17 -2.38 -0.01 3.33 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 2.69 8.12 -2.39 -0.02 2.67 16 42 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -66.95 347.45 1.07 -65.88 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.98 Total: 11.57 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 4.96 Total: -35.56 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -4.08 Total: -78.30 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.59 Total: -11.65 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.23 Total: 1.01 kcal Total: -66.95 1.07 -65.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597081432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.360 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds