Wall clock time and date at job start Tue Mar 31 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.50700 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.33387 * 122.54481 * 90.02190 * 4 3 2 6 6 S 1.75879 * 109.59830 * 180.02562 * 5 4 3 7 7 C 1.75882 * 90.96979 * 0.02562 * 6 5 4 8 8 C 1.50704 * 125.20329 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46903 * 269.97088 * 8 7 6 10 10 C 1.46849 * 110.99619 * 66.04874 * 9 8 7 11 11 C 1.53038 * 109.52148 * 185.83562 * 10 9 8 12 12 C 1.53115 * 109.27980 * 300.81909 * 11 10 9 13 13 C 1.53128 * 109.15764 * 57.65542 * 12 11 10 14 14 H 1.09001 * 109.50417 * 62.32435 * 13 12 11 15 15 C 1.50701 * 109.49906 * 182.40356 * 13 12 11 16 16 H 1.08008 * 119.99700 * 120.00159 * 15 13 12 17 17 C 1.37874 * 120.00330 * 299.99592 * 15 13 12 18 18 N 1.31515 * 119.99695 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00324 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46658 * 60.00110 * 19 17 15 21 21 H 1.48497 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47113 * 300.00680 * 19 17 15 23 23 C 1.46849 * 110.99745 * 190.25456 * 9 8 7 24 24 C 1.33389 * 109.59417 * 359.73159 * 7 6 5 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 29 29 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 30 30 H 1.08002 * 125.19704 * 0.02765 * 5 4 3 31 31 H 1.08999 * 109.47222 * 29.97392 * 8 7 6 32 32 H 1.08999 * 109.46997 * 149.97249 * 8 7 6 33 33 H 1.08998 * 109.46428 * 305.85080 * 10 9 8 34 34 H 1.09001 * 109.46064 * 65.82185 * 10 9 8 35 35 H 1.09003 * 109.50136 * 60.76337 * 11 10 9 36 36 H 1.08997 * 109.50092 * 180.87666 * 11 10 9 37 37 H 1.08994 * 109.52370 * 177.55553 * 12 11 10 38 38 H 1.09002 * 109.52694 * 297.68794 * 12 11 10 39 39 H 0.97002 * 119.99623 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46082 * 294.17706 * 23 9 8 41 41 H 1.08999 * 109.45981 * 54.14636 * 23 9 8 42 42 H 1.08002 * 122.54116 * 180.24308 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2274 1.1306 -1.1254 6 16 5.9362 0.9944 -0.7320 7 6 5.5729 1.0212 0.9886 8 6 6.5944 0.9393 2.0936 9 7 6.8168 -0.4680 2.4516 10 6 7.4419 -1.2005 1.3429 11 6 7.5250 -2.6875 1.6948 12 6 8.3495 -2.8590 2.9736 13 6 7.7040 -2.0475 4.1003 14 1 6.7029 -2.4309 4.2976 15 6 8.5420 -2.1633 5.3475 16 1 8.9665 -1.2777 5.7970 17 6 8.7666 -3.3997 5.9148 18 7 8.2499 -4.4780 5.3672 19 14 9.8047 -3.5432 7.4612 20 1 9.1776 -2.7560 8.5531 21 1 9.8945 -4.9689 7.8666 22 1 11.1678 -3.0186 7.1928 23 6 7.6157 -0.5790 3.6787 24 6 4.2555 1.1315 1.1660 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.8192 1.1639 -2.1247 31 1 7.5319 1.3806 1.7553 32 1 6.2308 1.4829 2.9656 33 1 6.8435 -1.0738 0.4407 34 1 8.4454 -0.8114 1.1706 35 1 6.5208 -3.0806 1.8538 36 1 8.0031 -3.2285 0.8783 37 1 8.3749 -3.9125 3.2521 38 1 9.3654 -2.5028 2.8027 39 1 8.4083 -5.3479 5.7661 40 1 8.6184 -0.1929 3.4953 41 1 7.1436 -0.0008 4.4729 42 1 3.8025 1.1713 2.1457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:25 Heat of formation + Delta-G solvation = -15.826977 kcal Electronic energy + Delta-G solvation = -21447.941829 eV Core-core repulsion = 18326.396379 eV Total energy + Delta-G solvation = -3121.545450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.99148 -38.18184 -36.93257 -33.97579 -32.09205 -30.35362 -29.68855 -27.83752 -25.89667 -25.72499 -24.92502 -22.48955 -21.66692 -20.69184 -18.94314 -18.51286 -17.24213 -16.56528 -16.34970 -15.85924 -15.41204 -15.15890 -14.63592 -14.39262 -13.77487 -13.63637 -13.22700 -12.99808 -12.76997 -12.60897 -12.35992 -12.25002 -12.08245 -11.70103 -11.61912 -11.52452 -11.11583 -10.91124 -10.72116 -10.62409 -10.58398 -10.07315 -9.86341 -9.80366 -9.43886 -9.09420 -8.68167 -8.56268 -8.34779 -8.23907 -7.65207 -5.94049 -4.00595 1.01548 1.67504 2.02421 2.60311 3.34165 3.38973 3.41158 3.94192 4.42800 4.63766 4.76411 4.87138 5.05789 5.11360 5.19002 5.22005 5.33506 5.35740 5.45441 5.49155 5.66438 5.73410 5.84546 5.87383 6.12799 6.24667 6.29619 6.40511 6.42188 6.54021 6.54415 6.76903 6.79357 6.97536 6.99186 7.26193 7.42242 7.67679 7.76946 7.82294 8.11996 8.21407 8.50868 9.03205 9.63443 11.11768 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.003417 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.728353 B = 8192.757209 C = 8738.245880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.124 3.876 4 C -0.103 4.103 5 C -0.202 4.202 6 S 0.097 5.903 7 C -0.151 4.151 8 C 0.121 3.879 9 N -0.531 5.531 10 C 0.057 3.943 11 C -0.116 4.116 12 C -0.111 4.111 13 C 0.056 3.944 14 H 0.035 0.965 15 C -0.516 4.516 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.068 3.932 24 C -0.114 4.114 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.161 0.839 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 12.329 -13.205 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.045 3.955 4 C -0.116 4.116 5 C -0.338 4.338 6 S 0.362 5.638 7 C -0.269 4.269 8 C -0.008 4.008 9 N -0.256 5.256 10 C -0.071 4.071 11 C -0.154 4.154 12 C -0.149 4.149 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.555 4.555 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.058 4.058 24 C -0.143 4.143 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.697 11.648 -13.944 20.595 hybrid contribution -0.152 0.522 1.392 1.495 sum -9.849 12.170 -12.552 20.067 Atomic orbital electron populations 1.22754 0.81165 1.02906 0.99775 1.88033 1.19377 1.27356 1.95330 1.21003 0.88872 0.85061 1.00558 1.18549 0.95131 1.05410 0.92536 1.25430 0.96418 1.09863 1.02059 1.84260 1.06102 1.72284 1.01134 1.24412 0.98201 1.07833 0.96426 1.20560 0.94213 0.91810 0.94250 1.62046 1.50176 1.08436 1.04923 1.22170 0.95788 0.95858 0.93268 1.21657 1.01300 0.93357 0.99052 1.21659 0.96018 1.04564 0.92621 1.18654 0.97089 0.87697 0.92833 0.94695 1.21107 1.31854 0.92826 1.09669 0.92908 1.24932 0.95840 0.95915 0.97128 1.69887 1.44737 0.98180 1.39818 0.86688 0.80835 0.76899 0.83717 1.20312 1.21329 1.20422 1.22343 0.93092 1.01643 0.88758 1.19887 0.92213 1.03085 0.99163 0.94263 0.94012 0.89521 0.92720 0.92306 0.82168 0.94439 0.89153 0.91944 0.96019 0.92054 0.93536 0.89077 0.95206 0.93009 0.96197 0.92130 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.75 10.69 -35.23 -0.38 -5.13 16 3 C 0.12 1.30 6.19 36.01 0.22 1.52 16 4 C -0.10 -1.30 5.43 -106.25 -0.58 -1.87 16 5 C -0.20 -2.38 10.98 29.04 0.32 -2.06 16 6 S 0.10 1.24 21.75 -107.50 -2.34 -1.10 16 7 C -0.15 -2.19 5.25 -36.00 -0.19 -2.38 16 8 C 0.12 1.89 5.46 -4.97 -0.03 1.86 16 9 N -0.53 -10.11 4.65 -236.11 -1.10 -11.20 16 10 C 0.06 1.07 5.29 -3.83 -0.02 1.05 16 11 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 12 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 13 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 14 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 15 C -0.52 -14.22 8.56 -34.44 -0.29 -14.51 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.56 11.35 55.43 0.63 -24.93 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.07 1.46 4.68 -3.83 -0.02 1.44 16 24 C -0.11 -1.58 9.85 -41.21 -0.41 -1.98 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 33 H 0.06 1.08 5.72 -51.93 -0.30 0.78 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 42 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -29.86 348.35 -10.33 -40.19 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.90 Total: -1.39 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.48 Total: -18.04 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.47 Total: -36.13 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.34 Total: -1.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.86 -10.33 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.367 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds