Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.50700 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.33387 * 122.54481 * 90.02190 * 4 3 2 6 6 S 1.75879 * 109.59830 * 180.02562 * 5 4 3 7 7 C 1.75882 * 90.96979 * 0.02562 * 6 5 4 8 8 C 1.50704 * 125.20329 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46903 * 269.97088 * 8 7 6 10 10 C 1.46849 * 110.99619 * 66.04874 * 9 8 7 11 11 C 1.53038 * 109.52148 * 185.83562 * 10 9 8 12 12 C 1.53115 * 109.27980 * 300.81909 * 11 10 9 13 13 C 1.53128 * 109.15764 * 57.65542 * 12 11 10 14 14 H 1.09001 * 109.50417 * 62.32435 * 13 12 11 15 15 C 1.50701 * 109.49906 * 182.40356 * 13 12 11 16 16 H 1.08008 * 119.99700 * 120.00159 * 15 13 12 17 17 C 1.37874 * 120.00330 * 299.99592 * 15 13 12 18 18 N 1.31515 * 119.99695 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00324 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46658 * 60.00110 * 19 17 15 21 21 H 1.48497 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47113 * 300.00680 * 19 17 15 23 23 C 1.46849 * 110.99745 * 190.25456 * 9 8 7 24 24 C 1.33389 * 109.59417 * 359.73159 * 7 6 5 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 29 29 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 30 30 H 1.08002 * 125.19704 * 0.02765 * 5 4 3 31 31 H 1.08999 * 109.47222 * 29.97392 * 8 7 6 32 32 H 1.08999 * 109.46997 * 149.97249 * 8 7 6 33 33 H 1.08998 * 109.46428 * 305.85080 * 10 9 8 34 34 H 1.09001 * 109.46064 * 65.82185 * 10 9 8 35 35 H 1.09003 * 109.50136 * 60.76337 * 11 10 9 36 36 H 1.08997 * 109.50092 * 180.87666 * 11 10 9 37 37 H 1.08994 * 109.52370 * 177.55553 * 12 11 10 38 38 H 1.09002 * 109.52694 * 297.68794 * 12 11 10 39 39 H 0.97002 * 119.99623 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46082 * 294.17706 * 23 9 8 41 41 H 1.08999 * 109.45981 * 54.14636 * 23 9 8 42 42 H 1.08002 * 122.54116 * 180.24308 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2274 1.1306 -1.1254 6 16 5.9362 0.9944 -0.7320 7 6 5.5729 1.0212 0.9886 8 6 6.5944 0.9393 2.0936 9 7 6.8168 -0.4680 2.4516 10 6 7.4419 -1.2005 1.3429 11 6 7.5250 -2.6875 1.6948 12 6 8.3495 -2.8590 2.9736 13 6 7.7040 -2.0475 4.1003 14 1 6.7029 -2.4309 4.2976 15 6 8.5420 -2.1633 5.3475 16 1 8.9665 -1.2777 5.7970 17 6 8.7666 -3.3997 5.9148 18 7 8.2499 -4.4780 5.3672 19 14 9.8047 -3.5432 7.4612 20 1 9.1776 -2.7560 8.5531 21 1 9.8945 -4.9689 7.8666 22 1 11.1678 -3.0186 7.1928 23 6 7.6157 -0.5790 3.6787 24 6 4.2555 1.1315 1.1660 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.8192 1.1639 -2.1247 31 1 7.5319 1.3806 1.7553 32 1 6.2308 1.4829 2.9656 33 1 6.8435 -1.0738 0.4407 34 1 8.4454 -0.8114 1.1706 35 1 6.5208 -3.0806 1.8538 36 1 8.0031 -3.2285 0.8783 37 1 8.3749 -3.9125 3.2521 38 1 9.3654 -2.5028 2.8027 39 1 8.4083 -5.3479 5.7661 40 1 8.6184 -0.1929 3.4953 41 1 7.1436 -0.0008 4.4729 42 1 3.8025 1.1713 2.1457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = -33.360389 kcal Electronic energy + Delta-G solvation = -21448.702135 eV Core-core repulsion = 18326.396379 eV Total energy + Delta-G solvation = -3122.305756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15131 -39.48470 -37.90044 -35.73328 -33.83981 -31.84774 -31.28901 -28.66085 -27.11875 -26.91788 -26.51317 -23.97321 -23.37282 -21.96836 -20.43588 -19.81987 -18.51446 -18.11398 -17.32746 -16.90769 -16.67884 -16.39424 -16.21246 -15.81588 -15.15242 -15.00006 -14.81491 -14.40053 -14.13969 -13.92248 -13.65905 -13.47511 -13.33663 -13.08695 -12.82335 -12.81356 -12.59516 -12.52112 -12.35819 -12.12504 -11.84842 -11.74620 -11.59120 -11.39634 -10.92657 -10.67411 -10.60346 -10.37697 -9.62806 -9.33082 -9.12828 -8.06510 -6.21233 0.02187 0.69292 1.03771 1.42592 1.44067 1.51635 1.61782 2.43975 3.15724 3.20075 3.20400 3.73704 4.06253 4.13491 4.17903 4.23058 4.32463 4.37308 4.43351 4.48972 4.57014 4.59297 4.59731 4.63578 4.73391 4.76092 4.86607 4.89719 4.96208 5.06514 5.16496 5.24436 5.36847 5.43180 5.50832 5.55113 5.63882 5.94965 6.10964 6.20066 6.26951 6.27223 6.44979 6.91263 7.46662 8.97976 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.003417 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.728353 B = 8192.757209 C = 8738.245880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.123 3.877 4 C -0.120 4.120 5 C -0.191 4.191 6 S 0.105 5.895 7 C -0.177 4.177 8 C 0.125 3.875 9 N -0.544 5.544 10 C 0.064 3.936 11 C -0.110 4.110 12 C -0.103 4.103 13 C 0.054 3.946 14 H -0.005 1.005 15 C -0.537 4.537 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.082 3.918 24 C -0.116 4.116 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.187 0.813 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.062 0.938 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 13.752 -14.358 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.045 3.955 4 C -0.132 4.132 5 C -0.327 4.327 6 S 0.370 5.630 7 C -0.294 4.294 8 C -0.004 4.004 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.035 3.965 14 H 0.013 0.987 15 C -0.575 4.575 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.045 4.045 24 C -0.146 4.146 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.204 0.796 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.107 13.092 -15.107 22.400 hybrid contribution -0.114 0.085 1.703 1.709 sum -10.221 13.177 -13.403 21.395 Atomic orbital electron populations 1.22925 0.79379 1.03620 1.01134 1.87969 1.21475 1.28567 1.95625 1.21107 0.87491 0.84733 1.02195 1.18783 0.96486 1.05768 0.92183 1.25791 0.95683 1.08093 1.03133 1.84179 1.06971 1.72191 0.99669 1.24312 0.98147 1.09797 0.97175 1.20539 0.95117 0.89480 0.95276 1.61949 1.49537 1.11073 1.04268 1.22103 0.96494 0.94122 0.93679 1.21570 0.99807 0.95487 0.97891 1.21463 0.96286 1.02198 0.94164 1.18570 0.94516 0.90463 0.92940 0.98700 1.21494 1.32211 0.93064 1.10768 0.92785 1.25743 0.97010 0.95599 1.00212 1.70042 1.45807 0.98533 1.41143 0.85654 0.79339 0.76931 0.79966 1.19574 1.21040 1.19640 1.22010 0.93587 0.98689 0.90214 1.20082 0.92336 1.02372 0.99846 0.92390 0.93123 0.89244 0.90344 0.91404 0.79563 0.93535 0.88447 0.90170 0.95437 0.93568 0.91303 0.92318 0.95682 0.93091 0.96186 0.91903 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.67 10.69 -148.98 -1.59 -11.26 16 3 C 0.12 2.31 6.19 71.24 0.44 2.75 16 4 C -0.12 -2.77 5.43 -20.92 -0.11 -2.88 16 5 C -0.19 -4.00 10.98 66.72 0.73 -3.27 16 6 S 0.10 2.45 21.75 -56.49 -1.23 1.22 16 7 C -0.18 -4.87 5.25 24.59 0.13 -4.74 16 8 C 0.12 3.74 5.46 85.56 0.47 4.21 16 9 N -0.54 -20.43 4.65 -900.92 -4.19 -24.61 16 10 C 0.06 2.32 5.29 86.33 0.46 2.77 16 11 C -0.11 -4.51 6.09 30.65 0.19 -4.33 16 12 C -0.10 -5.11 5.02 30.68 0.15 -4.95 16 13 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 14 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 15 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.74 5.30 84.65 0.45 1.19 16 18 N -0.92 -54.21 11.35 21.45 0.24 -53.97 16 19 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.08 3.54 4.68 86.32 0.40 3.94 16 24 C -0.12 -3.07 9.85 21.22 0.21 -2.86 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 28 H 0.08 1.07 8.12 -2.38 -0.02 1.05 16 29 H 0.07 1.12 8.13 -2.38 -0.02 1.10 16 30 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.10 2.72 7.98 -2.39 -0.02 2.70 16 33 H 0.08 2.64 5.72 -2.39 -0.01 2.63 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 3.28 6.15 -2.39 -0.01 3.27 16 38 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 2.63 8.01 -2.39 -0.02 2.61 16 42 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -65.00 348.35 1.20 -63.80 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.98 Total: 12.34 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.96 Total: -33.71 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.94 Total: -78.58 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.59 Total: -11.26 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.23 Total: 1.22 kcal Total: -65.00 1.20 -63.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.438 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds