Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38568 * 120.05336 * 359.72356 * 3 2 1 5 5 C 1.38429 * 119.96969 * 179.81217 * 4 3 2 6 6 F 1.35094 * 119.95101 * 180.21213 * 5 4 3 7 7 C 1.38455 * 120.09420 * 0.44313 * 5 4 3 8 8 C 1.50703 * 119.93663 * 179.76619 * 7 5 4 9 9 N 1.46896 * 109.47085 * 285.02447 * 8 7 5 10 10 C 1.47483 * 111.00252 * 265.97000 * 9 8 7 11 11 C 1.53508 * 87.93661 * 221.30025 * 10 9 8 12 12 C 1.50693 * 114.34771 * 139.68244 * 11 10 9 13 13 H 1.08003 * 120.00032 * 266.07483 * 12 11 10 14 14 C 1.37879 * 120.00024 * 86.07240 * 12 11 10 15 15 N 1.31517 * 119.99728 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00048 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47357 * 89.99947 * 16 14 12 18 18 H 1.48498 * 109.47378 * 210.00061 * 16 14 12 19 19 H 1.48502 * 109.47385 * 330.00396 * 16 14 12 20 20 C 1.47482 * 111.00007 * 169.99900 * 9 8 7 21 21 C 1.38243 * 120.12203 * 359.79070 * 7 5 4 22 22 C 1.38543 * 120.02442 * 359.97438 * 21 7 5 23 23 O 1.36034 * 120.04680 * 180.02562 * 22 21 7 24 24 C 1.42903 * 117.00411 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 28 28 H 1.07993 * 120.01654 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46872 * 45.02272 * 8 7 5 30 30 H 1.09001 * 109.47170 * 165.02415 * 8 7 5 31 31 H 1.09001 * 113.47152 * 336.06544 * 10 9 8 32 32 H 1.09001 * 113.47706 * 106.52989 * 10 9 8 33 33 H 1.09002 * 114.16941 * 272.37661 * 11 10 9 34 34 H 0.97006 * 119.99394 * 180.02562 * 15 14 12 35 35 H 1.08994 * 113.48011 * 253.46945 * 20 9 8 36 36 H 1.09003 * 113.47252 * 23.87625 * 20 9 8 37 37 H 1.08003 * 119.99058 * 179.97438 * 21 7 5 38 38 H 1.09002 * 109.47113 * 300.00209 * 24 23 22 39 39 H 1.09002 * 109.46699 * 60.00369 * 24 23 22 40 40 H 1.08993 * 109.47249 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2930 2.3745 -0.0058 5 6 1.9233 3.6070 -0.0018 6 9 1.1883 4.7405 -0.0032 7 6 3.3059 3.6796 -0.0014 8 6 3.9884 5.0233 -0.0024 9 7 3.8906 5.6211 -1.3406 10 6 5.0869 5.3128 -2.1461 11 6 5.0486 6.7602 -2.6560 12 6 6.4013 7.4141 -2.7717 13 1 6.7849 8.0095 -1.9563 14 6 7.1494 7.2524 -3.9185 15 7 6.6822 6.5277 -4.9116 16 14 8.8265 8.0624 -4.0617 17 1 9.8686 7.1370 -3.5489 18 1 9.1033 8.3793 -5.4858 19 1 8.8411 9.3149 -3.2640 20 6 4.3327 7.0280 -1.3246 21 6 4.0615 2.5219 -0.0005 22 6 3.4358 1.2858 0.0005 23 8 4.1789 0.1463 0.0019 24 6 5.5998 0.2983 0.0017 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2145 2.3194 -0.0099 29 1 3.5051 5.6768 0.7237 30 1 5.0380 4.8979 0.2637 31 1 5.9682 5.0871 -1.5457 32 1 4.9065 4.5728 -2.9259 33 1 4.4230 6.9068 -3.5364 34 1 7.2087 6.4137 -5.7183 35 1 3.5132 7.7417 -1.4081 36 1 5.0120 7.2603 -0.5043 37 1 5.1399 2.5811 -0.0006 38 1 5.9064 0.8468 -0.8890 39 1 5.9064 0.8489 0.8911 40 1 6.0703 -0.6849 0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = -73.942405 kcal Electronic energy + Delta-G solvation = -23756.923411 eV Core-core repulsion = 20066.644710 eV Total energy + Delta-G solvation = -3690.278701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.82653 -41.64291 -40.64254 -39.47783 -37.84459 -34.81180 -33.08641 -31.08992 -30.21696 -28.37796 -28.10184 -26.87980 -26.53561 -24.41059 -23.38430 -22.30176 -20.48285 -19.63635 -18.75250 -18.43380 -18.38092 -17.25595 -16.94699 -16.69782 -16.43640 -16.29196 -16.17157 -15.75063 -15.64253 -15.55812 -15.49264 -14.69273 -14.18325 -13.89599 -13.66481 -13.40758 -13.32753 -13.09145 -12.93883 -12.78937 -12.44635 -12.42175 -12.24451 -12.13123 -12.06545 -11.72432 -11.55894 -11.14015 -10.87719 -10.50148 -9.87195 -9.69166 -8.80398 -8.14462 -6.26353 0.03275 0.13419 1.43176 1.44704 1.55091 2.20133 2.26263 2.38881 2.43945 3.14644 3.23995 3.34852 3.60593 3.65792 3.95834 4.02196 4.19470 4.29454 4.33588 4.37306 4.38638 4.40309 4.46221 4.54753 4.56569 4.70613 4.72432 4.74159 4.84349 4.86028 4.95144 5.00603 5.15999 5.23173 5.49167 5.55372 5.62936 5.84657 5.98897 6.28718 6.36125 6.47314 6.83412 7.42461 8.95289 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.003796 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.605566 B = 7374.364254 C = 8194.852111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.117 3.883 4 C -0.205 4.205 5 C 0.106 3.894 6 F -0.139 7.139 7 C -0.109 4.109 8 C 0.063 3.937 9 N -0.480 5.480 10 C 0.021 3.979 11 C 0.022 3.978 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.010 3.990 21 C -0.138 4.138 22 C 0.080 3.920 23 O -0.320 6.320 24 C 0.016 3.984 25 H 0.124 0.876 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.170 0.830 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -13.031 13.019 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.071 3.929 4 C -0.224 4.224 5 C 0.086 3.914 6 F -0.117 7.117 7 C -0.110 4.110 8 C -0.065 4.065 9 N -0.202 5.202 10 C -0.108 4.108 11 C 0.003 3.997 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.118 4.118 21 C -0.157 4.157 22 C 0.034 3.966 23 O -0.234 6.234 24 C -0.078 4.078 25 H 0.142 0.858 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.187 0.813 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.172 0.828 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.785 -13.639 12.647 20.571 hybrid contribution 1.405 1.047 -0.178 1.761 sum -7.380 -12.592 12.469 19.197 Atomic orbital electron populations 1.23443 0.76203 1.05975 1.02438 1.86170 1.23525 1.24868 1.88667 1.17973 0.89024 0.85279 1.00647 1.21072 1.02007 0.89386 1.09967 1.17202 0.88538 0.81945 1.03751 1.91467 1.76883 1.49504 1.93884 1.19589 0.91971 0.95892 1.03593 1.21498 0.99389 0.92502 0.93129 1.68859 1.35935 1.05018 1.10406 1.23839 0.90273 1.00440 0.96276 1.20020 0.94860 0.92487 0.92340 1.21367 1.02198 1.31592 1.01613 0.91998 1.25843 1.01899 0.95496 0.95215 1.70112 1.39210 1.40443 1.06348 0.85548 0.79712 0.79133 0.77219 1.19836 1.21146 1.18934 1.23852 0.97975 0.90769 0.99222 1.20949 1.01142 0.89486 1.04159 1.18333 0.88771 0.86351 1.03132 1.86132 1.20486 1.27747 1.89075 1.23371 0.76750 1.05623 1.02070 0.85790 0.91860 0.91224 0.81260 0.89569 0.91908 0.92410 0.94060 0.95528 0.92879 0.91082 0.91393 0.82811 0.92699 0.91363 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.75 10.28 -79.55 -0.82 -8.57 16 3 C 0.12 3.17 6.70 22.56 0.15 3.33 16 4 C -0.21 -5.29 9.01 22.39 0.20 -5.09 16 5 C 0.11 3.25 7.24 22.37 0.16 3.41 16 6 F -0.14 -4.55 16.74 44.97 0.75 -3.80 16 7 C -0.11 -3.42 5.47 -19.81 -0.11 -3.53 16 8 C 0.06 2.09 4.62 85.56 0.40 2.48 16 9 N -0.48 -19.59 6.32 -932.44 -5.89 -25.48 16 10 C 0.02 0.97 7.28 83.57 0.61 1.57 16 11 C 0.02 1.13 3.76 -11.20 -0.04 1.09 16 12 C -0.53 -28.68 8.83 25.60 0.23 -28.45 16 13 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 14 C 0.01 0.81 5.46 84.65 0.46 1.28 16 15 N -0.92 -54.03 13.26 21.45 0.28 -53.75 16 16 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 C 0.01 0.43 7.25 83.58 0.61 1.04 16 21 C -0.14 -3.93 8.65 22.34 0.19 -3.74 16 22 C 0.08 2.27 6.70 22.56 0.15 2.42 16 23 O -0.32 -8.51 10.28 -80.03 -0.82 -9.33 16 24 C 0.02 0.30 9.81 113.37 1.11 1.41 16 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 27 H 0.07 0.80 7.67 -2.38 -0.02 0.78 16 28 H 0.17 3.33 6.30 -2.91 -0.02 3.31 16 29 H 0.09 2.68 8.01 -2.39 -0.02 2.66 16 30 H 0.06 1.97 7.11 -2.39 -0.02 1.95 16 31 H 0.06 2.57 7.38 -2.39 -0.02 2.56 16 32 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 34 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 37 H 0.15 3.86 6.23 -2.91 -0.02 3.85 16 38 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 39 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 40 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.29 338.69 1.81 -64.48 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.05 Total: 13.24 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 5.23 Total: -21.47 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -5.60 Total: -79.23 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.64 Total: -17.90 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.29 1.81 -64.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.463 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds