Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00351 * 2 1 4 4 H 1.09000 * 109.47205 * 30.00401 * 3 2 1 5 5 C 1.50702 * 109.46948 * 150.00005 * 3 2 1 6 6 O 1.21283 * 120.00262 * 5.00336 * 5 3 2 7 7 N 1.34777 * 119.99928 * 184.72242 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00374 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99796 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47429 * 89.99359 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99875 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99405 * 15 13 11 19 19 C 1.50702 * 109.47459 * 270.00081 * 3 2 1 20 20 C 1.38246 * 119.96981 * 324.72767 * 19 3 2 21 21 C 1.38194 * 120.02227 * 179.76762 * 20 19 3 22 22 C 1.38460 * 119.97577 * 0.50525 * 21 20 19 23 23 F 1.35105 * 120.03088 * 179.77173 * 22 21 20 24 24 C 1.38461 * 119.94785 * 359.74467 * 22 21 20 25 25 C 1.38206 * 119.97217 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.46489 * 300.00058 * 1 2 3 27 27 H 1.08997 * 109.46943 * 59.99229 * 1 2 3 28 28 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 30 30 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 31 31 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 32 32 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 33 33 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 34 34 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 35 35 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 36 36 H 0.96990 * 120.00275 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.99047 * 0.02562 * 20 19 3 38 38 H 1.07998 * 120.01488 * 180.25734 * 21 20 19 39 39 H 1.07998 * 120.01614 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.98070 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5139 5 6 3.3387 1.2636 0.7104 6 8 3.7897 0.2042 1.0914 7 7 4.0282 2.4030 0.9175 8 6 5.3224 2.3618 1.6027 9 6 5.8891 3.7791 1.7082 10 6 7.2404 3.7360 2.4244 11 6 7.7983 5.1321 2.5288 12 1 7.2442 5.9666 2.1251 13 6 9.0160 5.3440 3.1397 14 7 9.5026 6.5624 3.2313 15 14 9.9747 3.9006 3.8374 16 1 10.8750 3.3523 2.7914 17 1 10.7829 4.3570 4.9966 18 1 9.0282 2.8448 4.2789 19 6 2.2147 1.7643 -1.4208 20 6 2.5651 0.8512 -2.3979 21 6 2.7481 1.2701 -3.7020 22 6 2.5905 2.6066 -4.0279 23 9 2.7737 3.0181 -5.3017 24 6 2.2446 3.5210 -3.0475 25 6 2.0575 3.0990 -1.7448 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.6676 3.2504 0.6129 30 1 5.1911 1.9480 2.6025 31 1 6.0127 1.7352 1.0380 32 1 6.0203 4.1932 0.7085 33 1 5.1987 4.4053 2.2732 34 1 7.1088 3.3221 3.4240 35 1 7.9310 3.1097 1.8598 36 1 10.3591 6.7115 3.6614 37 1 2.6918 -0.1905 -2.1427 38 1 3.0178 0.5560 -4.4660 39 1 2.1219 4.5638 -3.3004 40 1 1.7873 3.8120 -0.9800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599341650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -111.546363 kcal Electronic energy + Delta-G solvation = -22993.405719 eV Core-core repulsion = 19301.496389 eV Total energy + Delta-G solvation = -3691.909330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.17646 -40.53622 -38.87201 -37.61950 -35.51696 -33.43432 -32.25716 -31.47354 -31.23202 -28.26030 -27.19319 -25.76063 -23.38961 -23.05416 -22.05789 -20.80964 -19.99985 -18.06452 -17.55389 -17.32809 -16.98415 -16.64649 -16.04182 -15.85788 -15.44092 -15.19387 -14.96715 -14.59673 -14.16797 -14.02981 -13.89607 -13.71917 -13.51613 -13.03548 -12.72402 -12.56667 -12.26716 -11.99499 -11.87592 -11.76466 -11.31488 -11.11240 -10.91110 -10.41676 -10.16984 -9.98411 -9.80031 -9.62831 -9.45532 -9.24952 -8.96048 -8.85879 -8.56997 -6.07843 -4.06734 0.69236 0.89038 2.54981 2.77484 3.17407 3.30555 3.38190 3.42251 3.84602 3.92996 4.21092 4.37876 4.43213 4.54924 4.65751 4.69601 4.90620 5.02476 5.05151 5.08839 5.26318 5.35960 5.51000 5.52463 5.59424 5.61992 5.76880 5.88254 5.97534 6.03092 6.27943 6.40952 6.50992 6.58924 6.71850 6.75601 7.20319 7.33840 7.52964 7.74433 8.21959 8.48431 8.95758 9.54408 11.05373 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.003331 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.055604 B = 8404.907824 C = 9597.986393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.116 3.884 4 H 0.097 0.903 5 C 0.515 3.485 6 O -0.519 6.519 7 N -0.720 5.720 8 C 0.115 3.885 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.128 4.128 20 C -0.057 4.057 21 C -0.155 4.155 22 C 0.105 3.895 23 F -0.139 7.139 24 C -0.152 4.152 25 C -0.079 4.079 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.398 0.602 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.089 -9.618 -11.983 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.054 3.946 4 H 0.114 0.886 5 C 0.298 3.702 6 O -0.394 6.394 7 N -0.372 5.372 8 C -0.007 4.007 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.129 4.129 20 C -0.075 4.075 21 C -0.173 4.173 22 C 0.086 3.914 23 F -0.117 7.117 24 C -0.170 4.170 25 C -0.097 4.097 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.477 -10.462 -11.670 25.786 hybrid contribution 0.302 0.171 -0.068 0.354 sum -20.175 -10.291 -11.738 25.509 Atomic orbital electron populations 1.22922 0.80397 1.03387 1.00249 1.88053 1.19860 1.24283 1.94629 1.20725 0.94567 0.87238 0.92039 0.88572 1.20052 0.85741 0.84586 0.79797 1.90731 1.68905 1.29650 1.50082 1.46044 1.22250 1.08939 1.60014 1.21694 0.82354 0.99908 0.96746 1.21710 0.99214 0.92666 1.01514 1.19502 0.91772 0.98181 0.95451 1.21085 1.04638 0.92206 1.38109 0.91010 1.25024 0.97352 0.95591 0.95475 1.69905 1.19588 1.20323 1.44356 0.86782 0.80287 0.83265 0.79008 1.20226 1.21354 1.18881 1.20134 1.03347 0.94147 0.95298 1.20912 0.94844 1.00683 0.91071 1.21197 1.03713 0.94400 0.98037 1.17809 1.01155 0.93273 0.79211 1.91516 1.92736 1.90996 1.36492 1.21122 1.03083 1.00166 0.92659 1.20880 0.98058 0.94784 0.96018 0.93604 0.93692 0.88967 0.76767 0.91557 0.91630 0.92065 0.92040 0.96269 0.96717 0.92676 0.84148 0.84456 0.84229 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.96 9.04 -55.09 -0.50 -4.46 16 3 C 0.12 1.20 2.72 -29.03 -0.08 1.12 16 4 H 0.10 0.71 7.70 -51.93 -0.40 0.31 16 5 C 0.51 7.26 7.17 -10.98 -0.08 7.19 16 6 O -0.52 -9.62 16.51 -14.31 -0.24 -9.86 16 7 N -0.72 -9.48 5.51 -60.29 -0.33 -9.81 16 8 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 9 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -14.56 9.66 -34.44 -0.33 -14.90 16 12 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 15 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 19 C -0.13 -1.22 4.90 -104.62 -0.51 -1.73 16 20 C -0.06 -0.57 9.35 -39.59 -0.37 -0.94 16 21 C -0.15 -1.46 10.03 -39.52 -0.40 -1.85 16 22 C 0.10 1.04 7.30 -39.42 -0.29 0.75 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.15 -1.29 10.03 -39.51 -0.40 -1.69 16 25 C -0.08 -0.63 9.50 -39.59 -0.38 -1.00 16 26 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.40 4.11 8.29 -40.82 -0.34 3.77 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.14 1.43 7.63 -52.49 -0.40 1.03 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -34.11 348.22 -7.50 -41.61 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.72 Total: -0.76 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.11 Total: -10.66 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.44 Total: -36.63 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.73 Total: -14.31 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.11 -7.50 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599341650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.938 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds