Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00351 * 2 1 4 4 H 1.09000 * 109.47205 * 30.00401 * 3 2 1 5 5 C 1.50702 * 109.46948 * 150.00005 * 3 2 1 6 6 O 1.21283 * 120.00262 * 5.00336 * 5 3 2 7 7 N 1.34777 * 119.99928 * 184.72242 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00374 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99796 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47429 * 89.99359 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99875 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99405 * 15 13 11 19 19 C 1.50702 * 109.47459 * 270.00081 * 3 2 1 20 20 C 1.38246 * 119.96981 * 324.72767 * 19 3 2 21 21 C 1.38194 * 120.02227 * 179.76762 * 20 19 3 22 22 C 1.38460 * 119.97577 * 0.50525 * 21 20 19 23 23 F 1.35105 * 120.03088 * 179.77173 * 22 21 20 24 24 C 1.38461 * 119.94785 * 359.74467 * 22 21 20 25 25 C 1.38206 * 119.97217 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.46489 * 300.00058 * 1 2 3 27 27 H 1.08997 * 109.46943 * 59.99229 * 1 2 3 28 28 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 30 30 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 31 31 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 32 32 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 33 33 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 34 34 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 35 35 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 36 36 H 0.96990 * 120.00275 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.99047 * 0.02562 * 20 19 3 38 38 H 1.07998 * 120.01488 * 180.25734 * 21 20 19 39 39 H 1.07998 * 120.01614 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.98070 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5139 5 6 3.3387 1.2636 0.7104 6 8 3.7897 0.2042 1.0914 7 7 4.0282 2.4030 0.9175 8 6 5.3224 2.3618 1.6027 9 6 5.8891 3.7791 1.7082 10 6 7.2404 3.7360 2.4244 11 6 7.7983 5.1321 2.5288 12 1 7.2442 5.9666 2.1251 13 6 9.0160 5.3440 3.1397 14 7 9.5026 6.5624 3.2313 15 14 9.9747 3.9006 3.8374 16 1 10.8750 3.3523 2.7914 17 1 10.7829 4.3570 4.9966 18 1 9.0282 2.8448 4.2789 19 6 2.2147 1.7643 -1.4208 20 6 2.5651 0.8512 -2.3979 21 6 2.7481 1.2701 -3.7020 22 6 2.5905 2.6066 -4.0279 23 9 2.7737 3.0181 -5.3017 24 6 2.2446 3.5210 -3.0475 25 6 2.0575 3.0990 -1.7448 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.6676 3.2504 0.6129 30 1 5.1911 1.9480 2.6025 31 1 6.0127 1.7352 1.0380 32 1 6.0203 4.1932 0.7085 33 1 5.1987 4.4053 2.2732 34 1 7.1088 3.3221 3.4240 35 1 7.9310 3.1097 1.8598 36 1 10.3591 6.7115 3.6614 37 1 2.6918 -0.1905 -2.1427 38 1 3.0178 0.5560 -4.4660 39 1 2.1219 4.5638 -3.3004 40 1 1.7873 3.8120 -0.9800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599341650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = -133.338667 kcal Electronic energy + Delta-G solvation = -22994.350704 eV Core-core repulsion = 19301.496389 eV Total energy + Delta-G solvation = -3692.854316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.94550 -41.43696 -39.78474 -38.39856 -36.93722 -35.17890 -33.58845 -32.53730 -32.13796 -29.41719 -28.32831 -26.64970 -24.57699 -24.05487 -22.96231 -22.24569 -21.27955 -19.02532 -18.78242 -18.40899 -18.01903 -17.72926 -16.95687 -16.62974 -16.58816 -16.38189 -16.15273 -15.62826 -15.36914 -15.22151 -14.77707 -14.68187 -14.49714 -14.28564 -13.86696 -13.76146 -13.63778 -13.32799 -12.84000 -12.71913 -12.67943 -12.39460 -12.00724 -11.88478 -11.77171 -11.58811 -11.32150 -11.19940 -10.75324 -10.69620 -10.14319 -10.11537 -9.65196 -8.28530 -6.32061 -0.02374 0.22455 1.37464 1.39129 1.49961 1.50547 1.83006 2.36952 2.48024 3.04671 3.07514 3.22602 3.48114 3.72825 3.75403 3.91086 4.01668 4.10852 4.21421 4.29133 4.40118 4.50816 4.53101 4.57768 4.87610 4.88460 4.89645 4.91203 4.93204 5.05163 5.11030 5.18666 5.34787 5.36211 5.49788 5.57068 5.66019 5.83122 6.01149 6.28455 6.52358 6.76221 7.17185 7.32875 8.87796 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.003331 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.055604 B = 8404.907824 C = 9597.986393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.381 6.381 3 C 0.125 3.875 4 H 0.133 0.867 5 C 0.512 3.488 6 O -0.569 6.569 7 N -0.709 5.709 8 C 0.127 3.873 9 C -0.099 4.099 10 C -0.013 4.013 11 C -0.529 4.529 12 H 0.040 0.960 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.945 3.055 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.247 1.247 19 C -0.133 4.133 20 C -0.070 4.070 21 C -0.160 4.160 22 C 0.087 3.913 23 F -0.148 7.148 24 C -0.152 4.152 25 C -0.071 4.071 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.415 0.585 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.541 -10.061 -11.890 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.299 6.299 3 C 0.063 3.937 4 H 0.151 0.849 5 C 0.298 3.702 6 O -0.448 6.448 7 N -0.362 5.362 8 C 0.003 3.997 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.567 4.567 12 H 0.058 0.942 13 C -0.191 4.191 14 N -0.591 5.591 15 Si 0.769 3.231 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.171 1.171 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.179 4.179 22 C 0.068 3.932 23 F -0.127 7.127 24 C -0.170 4.170 25 C -0.089 4.089 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.252 0.748 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.970 -10.885 -11.599 27.124 hybrid contribution 0.691 0.364 -0.142 0.794 sum -21.279 -10.521 -11.742 26.483 Atomic orbital electron populations 1.23123 0.78380 1.04406 1.01500 1.88021 1.22089 1.24996 1.94778 1.20682 0.92819 0.87933 0.92226 0.84948 1.20777 0.86799 0.83671 0.78954 1.90707 1.70391 1.31431 1.52225 1.45836 1.21128 1.09841 1.59367 1.21330 0.83584 0.98031 0.96722 1.21479 0.96951 0.94144 1.01158 1.19474 0.94261 0.95087 0.96307 1.21462 1.04426 0.93729 1.37056 0.94211 1.25956 0.98712 0.98344 0.96137 1.70049 1.20364 1.22736 1.45948 0.85735 0.79021 0.80001 0.78382 1.19435 1.21062 1.17093 1.20156 1.03747 0.94807 0.94641 1.20929 0.95669 1.00607 0.91594 1.21298 1.03718 0.94715 0.98176 1.18071 1.02061 0.93809 0.79273 1.91492 1.92935 1.91067 1.37159 1.21409 1.02169 1.00879 0.92570 1.21207 0.96657 0.94531 0.96506 0.92186 0.92467 0.88264 0.74819 0.92098 0.92684 0.91704 0.91203 0.96013 0.96439 0.92541 0.85102 0.83636 0.82384 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.81 113.37 1.23 1.49 16 2 O -0.38 -8.01 9.04 -129.99 -1.18 -9.19 16 3 C 0.12 2.26 2.72 29.10 0.08 2.34 16 4 H 0.13 1.40 7.70 -2.39 -0.02 1.38 16 5 C 0.51 13.61 7.17 87.66 0.63 14.24 16 6 O -0.57 -20.87 16.51 15.95 0.26 -20.60 16 7 N -0.71 -17.03 5.51 -463.06 -2.55 -19.58 16 8 C 0.13 3.89 5.67 86.38 0.49 4.38 16 9 C -0.10 -3.43 5.27 30.59 0.16 -3.27 16 10 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 11 C -0.53 -29.53 9.66 25.60 0.25 -29.28 16 12 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 13 C 0.01 0.31 5.47 84.66 0.46 0.77 16 14 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 15 Si 0.94 44.11 27.47 68.60 1.88 46.00 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 19 C -0.13 -2.21 4.90 -19.86 -0.10 -2.31 16 20 C -0.07 -1.33 9.35 22.26 0.21 -1.13 16 21 C -0.16 -2.91 10.03 22.31 0.22 -2.69 16 22 C 0.09 1.61 7.30 22.38 0.16 1.77 16 23 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 24 C -0.15 -2.20 10.03 22.32 0.22 -1.98 16 25 C -0.07 -0.88 9.50 22.26 0.21 -0.67 16 26 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.41 7.19 8.29 -92.71 -0.77 6.42 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 34 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 35 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 36 H 0.27 15.42 8.31 -92.72 -0.77 14.64 16 37 H 0.13 2.70 7.63 -2.91 -0.02 2.68 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -74.95 348.22 4.07 -70.88 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.22 Total: 10.20 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.35 Total: -16.81 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.25 Total: -78.18 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.91 Total: -29.79 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -74.95 4.07 -70.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599341650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.457 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds