Wall clock time and date at job start Tue Mar 31 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35964 * 116.99782 * 2 1 4 4 C 1.38730 * 119.97950 * 0.02562 * 3 2 1 5 5 C 1.38119 * 120.06005 * 179.69672 * 4 3 2 6 6 C 1.38794 * 120.00360 * 0.56010 * 5 4 3 7 7 N 1.40223 * 120.02070 * 179.71920 * 6 5 4 8 8 C 1.34773 * 120.00224 * 34.63617 * 7 6 5 9 9 O 1.21295 * 119.99935 * 355.54935 * 8 7 6 10 10 C 1.50697 * 120.00104 * 175.26682 * 8 7 6 11 11 C 1.53000 * 109.47506 * 180.27794 * 10 8 7 12 12 C 1.53002 * 109.47440 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46910 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46647 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00529 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99562 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00475 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99647 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47100 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46976 * 119.99958 * 18 16 14 21 21 H 1.48500 * 109.46632 * 239.99596 * 18 16 14 22 22 C 1.39030 * 119.95314 * 359.44567 * 6 5 4 23 23 F 1.35095 * 120.02791 * 180.29675 * 22 6 5 24 24 C 1.38285 * 119.94442 * 0.27449 * 22 6 5 25 25 H 1.09009 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47001 * 299.99472 * 1 2 3 27 27 H 1.08994 * 109.47308 * 59.99895 * 1 2 3 28 28 H 1.08008 * 119.96916 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99846 * 180.30012 * 5 4 3 30 30 H 0.96998 * 119.99610 * 214.64049 * 7 6 5 31 31 H 1.09002 * 109.47514 * 300.28505 * 10 8 7 32 32 H 1.09005 * 109.47118 * 60.28088 * 10 8 7 33 33 H 1.08996 * 109.47066 * 300.00464 * 11 10 8 34 34 H 1.09005 * 109.46692 * 60.00032 * 11 10 8 35 35 H 1.08996 * 109.47250 * 300.00204 * 12 11 10 36 36 H 1.08999 * 109.46622 * 60.00410 * 12 11 10 37 37 H 1.09004 * 109.46854 * 299.99676 * 13 12 11 38 38 H 1.08991 * 109.47614 * 60.00255 * 13 12 11 39 39 H 0.97001 * 120.00773 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.99680 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2902 2.3747 0.0005 5 6 1.9154 3.6062 0.0069 6 6 3.3013 3.6810 0.0009 7 7 3.9365 4.9311 0.0014 8 6 3.3885 5.9652 0.6699 9 8 2.3067 5.8374 1.2034 10 6 4.1227 7.2781 0.7600 11 6 3.2914 8.2727 1.5727 12 6 4.0365 9.6059 1.6636 13 6 3.2054 10.6002 2.4769 14 6 3.9391 11.9136 2.5659 15 1 4.9019 12.0276 2.0903 16 6 3.3814 12.9694 3.2554 17 7 2.2091 12.8305 3.8349 18 14 4.2912 14.5972 3.3662 19 1 5.5800 14.4947 2.6357 20 1 3.4621 15.6699 2.7603 21 1 4.5548 14.9207 4.7914 22 6 4.0594 2.5155 0.0003 23 9 5.4085 2.5866 0.0006 24 6 3.4313 1.2836 -0.0002 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2116 2.3171 0.0005 29 1 1.3259 4.5111 0.0122 30 1 4.7702 5.0517 -0.4795 31 1 5.0847 7.1238 1.2487 32 1 4.2841 7.6737 -0.2429 33 1 2.3295 8.4270 1.0839 34 1 3.1300 7.8771 2.5756 35 1 4.9986 9.4519 2.1522 36 1 4.1974 10.0012 0.6606 37 1 2.2431 10.7543 1.9886 38 1 3.0447 10.2048 3.4798 39 1 1.8166 13.5734 4.3197 40 1 4.0193 0.3777 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601712570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:24 Heat of formation + Delta-G solvation = -112.278664 kcal Electronic energy + Delta-G solvation = -22323.686247 eV Core-core repulsion = 18631.745161 eV Total energy + Delta-G solvation = -3691.941085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.25163 -40.80851 -39.85963 -37.54045 -35.01155 -34.60762 -32.66585 -31.23733 -30.20882 -29.03502 -27.52285 -25.65016 -23.76852 -22.79714 -21.89124 -20.39590 -20.02404 -18.92988 -18.00045 -17.27739 -16.71759 -16.38574 -16.19868 -16.11709 -15.75741 -15.62561 -15.21118 -14.54334 -14.35372 -14.15677 -13.92722 -13.26164 -12.91274 -12.86330 -12.72834 -12.59366 -12.30262 -11.75680 -11.72046 -11.61348 -11.41791 -11.01253 -10.58266 -10.49805 -10.44731 -10.24114 -9.89503 -9.63456 -9.26814 -9.21407 -8.99218 -8.31777 -8.10244 -5.96302 -3.98745 0.73865 0.90641 2.47924 2.70628 2.85651 3.27436 3.32642 3.39919 3.43874 3.93967 4.37853 4.48092 4.54345 4.68053 4.70550 4.76425 4.92366 5.01670 5.09045 5.20349 5.28690 5.30596 5.39240 5.66103 5.77881 5.80515 5.94099 6.04041 6.09026 6.24699 6.44714 6.51759 6.80097 6.92609 6.97513 7.13317 7.19579 7.73137 7.88315 8.00050 8.05012 8.46776 9.09181 9.65053 11.15032 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.034205 B = 0.002223 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.400651 B =12592.329474 C =13275.144361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.138 3.862 4 C -0.197 4.197 5 C -0.054 4.054 6 C 0.084 3.916 7 N -0.676 5.676 8 C 0.515 3.485 9 O -0.517 6.517 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.110 3.890 23 F -0.131 7.131 24 C -0.172 4.172 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.413 0.587 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 -26.497 -11.295 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.092 3.908 4 C -0.216 4.216 5 C -0.075 4.075 6 C -0.011 4.011 7 N -0.323 5.323 8 C 0.304 3.696 9 O -0.391 6.391 10 C -0.177 4.177 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.088 3.912 23 F -0.110 7.110 24 C -0.192 4.192 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.173 0.827 30 H 0.249 0.751 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.588 -26.604 -10.772 28.708 hybrid contribution 0.901 1.075 -0.094 1.405 sum 0.313 -25.530 -10.865 27.747 Atomic orbital electron populations 1.23124 0.77822 1.04205 1.01782 1.86067 1.21779 1.26360 1.88599 1.18582 0.91318 0.84541 0.96386 1.21261 1.00724 0.91440 1.08223 1.21089 0.92124 0.98886 0.95354 1.17691 0.92219 0.84243 1.06937 1.43603 1.27543 1.08191 1.52972 1.21369 0.86274 0.85594 0.76360 1.90690 1.20835 1.82772 1.44777 1.21829 1.00654 0.91438 1.03744 1.21479 0.98550 0.94538 0.99610 1.21652 0.98986 0.93715 1.00467 1.19101 0.95048 0.92691 0.94930 1.21318 1.04686 0.96899 1.32896 0.92677 1.25049 0.95010 0.98910 0.95663 1.69977 1.16596 1.31739 1.35150 0.86554 0.79877 0.83951 0.77714 1.19771 1.21053 1.21055 1.17037 0.76803 0.92516 1.04820 1.91501 1.28448 1.97047 1.93975 1.20018 0.92507 0.97009 1.09666 0.88003 0.92254 0.92339 0.84380 0.82721 0.75087 0.88601 0.88640 0.91661 0.91664 0.93387 0.93381 0.96579 0.96570 0.93089 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.74 10.50 -19.63 -0.21 -2.95 16 3 C 0.14 1.33 6.69 -39.23 -0.26 1.07 16 4 C -0.20 -1.88 9.03 -39.44 -0.36 -2.23 16 5 C -0.05 -0.62 8.70 -39.42 -0.34 -0.96 16 6 C 0.08 0.97 6.32 -83.52 -0.53 0.44 16 7 N -0.68 -7.29 5.23 -9.77 -0.05 -7.34 16 8 C 0.51 6.85 7.68 -10.99 -0.08 6.77 16 9 O -0.52 -8.64 13.40 5.54 0.07 -8.57 16 10 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 11 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 C 0.11 1.17 7.31 -39.27 -0.29 0.89 16 23 F -0.13 -1.38 16.95 2.25 0.04 -1.35 16 24 C -0.17 -1.68 9.96 -39.39 -0.39 -2.07 16 25 H 0.10 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.14 1.00 6.29 -52.48 -0.33 0.67 16 29 H 0.16 1.94 6.19 -52.49 -0.32 1.62 16 30 H 0.41 3.28 8.67 -40.82 -0.35 2.93 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -33.79 344.37 -7.04 -40.83 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.57 Total: -1.48 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.23 Total: -14.48 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.69 Total: -34.03 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.13 Total: -11.52 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.79 -7.04 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601712570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.451 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds