Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35964 * 116.99782 * 2 1 4 4 C 1.38730 * 119.97950 * 0.02562 * 3 2 1 5 5 C 1.38119 * 120.06005 * 179.69672 * 4 3 2 6 6 C 1.38794 * 120.00360 * 0.56010 * 5 4 3 7 7 N 1.40223 * 120.02070 * 179.71920 * 6 5 4 8 8 C 1.34773 * 120.00224 * 34.63617 * 7 6 5 9 9 O 1.21295 * 119.99935 * 355.54935 * 8 7 6 10 10 C 1.50697 * 120.00104 * 175.26682 * 8 7 6 11 11 C 1.53000 * 109.47506 * 180.27794 * 10 8 7 12 12 C 1.53002 * 109.47440 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46910 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46647 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00529 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99562 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00475 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99647 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47100 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46976 * 119.99958 * 18 16 14 21 21 H 1.48500 * 109.46632 * 239.99596 * 18 16 14 22 22 C 1.39030 * 119.95314 * 359.44567 * 6 5 4 23 23 F 1.35095 * 120.02791 * 180.29675 * 22 6 5 24 24 C 1.38285 * 119.94442 * 0.27449 * 22 6 5 25 25 H 1.09009 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47001 * 299.99472 * 1 2 3 27 27 H 1.08994 * 109.47308 * 59.99895 * 1 2 3 28 28 H 1.08008 * 119.96916 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99846 * 180.30012 * 5 4 3 30 30 H 0.96998 * 119.99610 * 214.64049 * 7 6 5 31 31 H 1.09002 * 109.47514 * 300.28505 * 10 8 7 32 32 H 1.09005 * 109.47118 * 60.28088 * 10 8 7 33 33 H 1.08996 * 109.47066 * 300.00464 * 11 10 8 34 34 H 1.09005 * 109.46692 * 60.00032 * 11 10 8 35 35 H 1.08996 * 109.47250 * 300.00204 * 12 11 10 36 36 H 1.08999 * 109.46622 * 60.00410 * 12 11 10 37 37 H 1.09004 * 109.46854 * 299.99676 * 13 12 11 38 38 H 1.08991 * 109.47614 * 60.00255 * 13 12 11 39 39 H 0.97001 * 120.00773 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.99680 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2902 2.3747 0.0005 5 6 1.9154 3.6062 0.0069 6 6 3.3013 3.6810 0.0009 7 7 3.9365 4.9311 0.0014 8 6 3.3885 5.9652 0.6699 9 8 2.3067 5.8374 1.2034 10 6 4.1227 7.2781 0.7600 11 6 3.2914 8.2727 1.5727 12 6 4.0365 9.6059 1.6636 13 6 3.2054 10.6002 2.4769 14 6 3.9391 11.9136 2.5659 15 1 4.9019 12.0276 2.0903 16 6 3.3814 12.9694 3.2554 17 7 2.2091 12.8305 3.8349 18 14 4.2912 14.5972 3.3662 19 1 5.5800 14.4947 2.6357 20 1 3.4621 15.6699 2.7603 21 1 4.5548 14.9207 4.7914 22 6 4.0594 2.5155 0.0003 23 9 5.4085 2.5866 0.0006 24 6 3.4313 1.2836 -0.0002 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2116 2.3171 0.0005 29 1 1.3259 4.5111 0.0122 30 1 4.7702 5.0517 -0.4795 31 1 5.0847 7.1238 1.2487 32 1 4.2841 7.6737 -0.2429 33 1 2.3295 8.4270 1.0839 34 1 3.1300 7.8771 2.5756 35 1 4.9986 9.4519 2.1522 36 1 4.1974 10.0012 0.6606 37 1 2.2431 10.7543 1.9886 38 1 3.0447 10.2048 3.4798 39 1 1.8166 13.5734 4.3197 40 1 4.0193 0.3777 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601712570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -133.391294 kcal Electronic energy + Delta-G solvation = -22324.601759 eV Core-core repulsion = 18631.745161 eV Total energy + Delta-G solvation = -3692.856598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.06201 -41.67870 -40.68665 -38.35924 -36.64153 -35.56032 -34.62039 -32.08889 -31.62403 -30.05450 -28.19829 -27.27195 -24.85802 -24.03901 -22.95893 -21.77292 -21.35655 -19.68076 -18.83091 -18.42194 -18.14776 -17.58084 -17.15139 -16.86733 -16.79507 -16.50641 -16.40648 -15.89007 -15.59148 -15.35632 -14.87866 -14.55041 -14.14526 -13.77427 -13.68466 -13.56929 -13.47930 -13.33137 -13.21176 -12.85406 -12.39559 -12.31613 -12.17321 -12.15220 -12.06695 -11.37711 -11.35201 -11.17428 -11.02232 -10.79284 -10.55313 -10.01504 -8.90893 -8.18643 -6.30384 -0.05210 0.09581 1.40667 1.41344 1.48708 1.54843 1.89979 2.16139 2.42011 2.47811 3.14209 3.14931 3.58933 3.73185 3.85423 4.00715 4.14407 4.15543 4.20012 4.40340 4.41166 4.46601 4.65738 4.67873 4.76286 4.83296 4.87496 4.92733 4.98937 5.15910 5.19441 5.23080 5.33674 5.39116 5.57790 5.64694 5.79377 5.89161 6.25791 6.27115 6.29730 6.88496 7.04811 7.39179 8.93698 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.034205 B = 0.002223 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.400651 B =12592.329474 C =13275.144361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.139 3.861 4 C -0.194 4.194 5 C -0.069 4.069 6 C 0.066 3.934 7 N -0.662 5.662 8 C 0.516 3.484 9 O -0.559 6.559 10 C -0.126 4.126 11 C -0.096 4.096 12 C -0.097 4.097 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.008 4.008 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.258 1.258 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.108 3.892 23 F -0.131 7.131 24 C -0.174 4.174 25 H 0.124 0.876 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.427 0.573 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.062 0.938 37 H -0.014 1.014 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -27.244 -12.463 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.093 3.907 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.029 4.029 7 N -0.309 5.309 8 C 0.306 3.694 9 O -0.436 6.436 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.134 4.134 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.087 3.913 23 F -0.109 7.109 24 C -0.194 4.194 25 H 0.142 0.858 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.157 0.843 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.026 -27.382 -11.974 29.903 hybrid contribution 0.316 1.194 0.272 1.264 sum 1.342 -26.188 -11.702 28.715 Atomic orbital electron populations 1.23433 0.75953 1.05994 1.02530 1.86067 1.23732 1.25734 1.88278 1.18669 0.91445 0.84958 0.95655 1.21445 1.01839 0.90769 1.07268 1.21054 0.92296 0.99078 0.96448 1.17819 0.92465 0.84583 1.08080 1.43388 1.27760 1.07545 1.52221 1.21439 0.85728 0.86242 0.76020 1.90686 1.22675 1.83495 1.46787 1.21699 1.00288 0.89783 1.04727 1.21258 0.98408 0.94379 0.99361 1.21450 0.98456 0.93487 1.00018 1.19064 0.94777 0.94042 0.94036 1.21792 1.05226 0.97900 1.32882 0.91603 1.26089 0.95880 1.03368 0.95156 1.70128 1.18454 1.33189 1.36037 0.85344 0.78921 0.78495 0.77942 1.18127 1.20471 1.20555 1.17036 0.76781 0.92526 1.04985 1.91499 1.28373 1.97062 1.94012 1.20244 0.92921 0.97260 1.08984 0.85824 0.91814 0.91258 0.82406 0.84285 0.73380 0.86091 0.85620 0.93307 0.93716 0.92156 0.91910 0.99543 0.99700 0.92869 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.09 10.50 -93.15 -0.98 -6.06 16 3 C 0.14 2.50 6.69 22.50 0.15 2.66 16 4 C -0.19 -3.54 9.03 22.36 0.20 -3.33 16 5 C -0.07 -1.57 8.70 22.37 0.19 -1.37 16 6 C 0.07 1.47 6.32 38.12 0.24 1.71 16 7 N -0.66 -13.51 5.23 -303.21 -1.59 -15.09 16 8 C 0.52 13.40 7.68 87.66 0.67 14.07 16 9 O -0.56 -19.16 13.40 -3.07 -0.04 -19.20 16 10 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 11 C -0.10 -3.30 4.50 30.59 0.14 -3.17 16 12 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 13 C 0.02 0.97 4.97 29.85 0.15 1.12 16 14 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 17 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.11 2.19 7.31 22.47 0.16 2.35 16 23 F -0.13 -2.57 16.95 44.97 0.76 -1.81 16 24 C -0.17 -3.17 9.96 22.39 0.22 -2.95 16 25 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 27 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 29 H 0.14 3.64 6.19 -2.91 -0.02 3.62 16 30 H 0.43 5.94 8.67 -92.71 -0.80 5.14 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -74.88 344.37 4.99 -69.89 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.25 Total: 9.04 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 4.27 Total: -25.03 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.30 Total: -73.61 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.02 Total: -25.27 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.76 Total: -1.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -74.88 4.99 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601712570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.500 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds