Wall clock time and date at job start Tue Mar 31 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99825 * 2 1 4 4 C 1.38730 * 120.01431 * 0.02562 * 3 2 1 5 5 C 1.38398 * 120.02945 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.97253 * 179.97438 * 5 4 3 7 7 C 1.38400 * 120.06122 * 0.02562 * 5 4 3 8 8 C 1.38734 * 120.03110 * 359.97438 * 7 5 4 9 9 O 1.35889 * 120.02064 * 180.02562 * 8 7 5 10 10 C 1.42905 * 116.99536 * 359.97438 * 9 8 7 11 11 C 1.38649 * 120.01637 * 180.02562 * 3 2 1 12 12 C 1.50707 * 120.02925 * 0.02562 * 11 3 2 13 13 N 1.46507 * 109.46845 * 270.00321 * 12 11 3 14 14 C 1.36936 * 119.99593 * 269.99616 * 13 12 11 15 15 H 1.08003 * 119.99271 * 139.86127 * 14 13 12 16 16 C 1.38803 * 120.00398 * 319.86607 * 14 13 12 17 17 N 1.31624 * 119.99710 * 341.30115 * 16 14 13 18 18 Si 1.86803 * 120.00066 * 161.30676 * 16 14 13 19 19 H 1.48501 * 109.47104 * 59.99888 * 18 16 14 20 20 H 1.48504 * 109.46812 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47155 * 299.99591 * 18 16 14 22 22 C 1.46502 * 120.00087 * 90.00023 * 13 12 11 23 23 C 1.52995 * 117.49971 * 183.19032 * 22 13 12 24 24 C 1.52999 * 117.49862 * 114.52880 * 22 13 12 25 25 H 1.08997 * 109.47338 * 299.99309 * 1 2 3 26 26 H 1.09003 * 109.47703 * 59.99831 * 1 2 3 27 27 H 1.09008 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.98394 * 0.24818 * 4 3 2 29 29 H 1.08003 * 119.98827 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46567 * 180.02562 * 10 9 8 31 31 H 1.08998 * 109.47355 * 299.99679 * 10 9 8 32 32 H 1.08994 * 109.47030 * 60.00507 * 10 9 8 33 33 H 1.08997 * 109.47092 * 29.99532 * 12 11 3 34 34 H 1.08993 * 109.47310 * 150.00588 * 12 11 3 35 35 H 0.96997 * 119.99546 * 175.01813 * 17 16 14 36 36 H 1.09007 * 115.54802 * 328.85842 * 22 13 12 37 37 H 1.09004 * 117.49644 * 359.97438 * 23 22 13 38 38 H 1.08992 * 117.50306 * 145.01663 * 23 22 13 39 39 H 1.08997 * 117.49625 * 214.97613 * 24 22 13 40 40 H 1.09000 * 117.49980 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3745 0.0005 5 6 1.9185 3.6078 0.0011 6 9 1.1818 4.7403 0.0011 7 6 3.3005 3.6822 0.0005 8 6 4.0583 2.5201 0.0000 9 8 5.4153 2.5933 0.0000 10 6 5.9944 3.8997 0.0000 11 6 3.4305 1.2839 -0.0005 12 6 4.2523 0.0206 -0.0017 13 7 4.5191 -0.3896 1.3792 14 6 5.6379 0.0654 2.0245 15 1 5.5822 0.3528 3.0641 16 6 6.8434 0.1572 1.3427 17 7 7.0198 -0.5144 0.2245 18 14 8.2155 1.2337 2.0120 19 1 8.6034 0.7576 3.3641 20 1 9.3896 1.1596 1.1058 21 1 7.7444 2.6393 2.0985 22 6 3.5890 -1.2866 2.0696 23 6 3.8833 -1.6186 3.5338 24 6 4.1002 -2.6776 2.4500 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2120 2.3179 0.0050 29 1 3.7893 4.6452 0.0005 30 1 7.0811 3.8153 -0.0005 31 1 5.6720 4.4401 -0.8900 32 1 5.6720 4.4401 0.8900 33 1 3.7042 -0.7689 -0.5157 34 1 5.1962 0.2017 -0.5157 35 1 7.8334 -0.3948 -0.2898 36 1 2.5436 -1.1980 1.7739 37 1 4.7692 -1.1699 3.9834 38 1 3.0316 -1.7488 4.2014 39 1 3.3910 -3.5040 2.4051 40 1 5.1283 -2.9255 2.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:27 Heat of formation + Delta-G solvation = -35.622083 kcal Electronic energy + Delta-G solvation = -25207.896439 eV Core-core repulsion = 21519.279432 eV Total energy + Delta-G solvation = -3688.617007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.65490 -40.06696 -38.55631 -36.76920 -35.73793 -33.47654 -31.45060 -29.39626 -29.30412 -27.55133 -26.52862 -25.24485 -23.45354 -21.67027 -21.32957 -21.02144 -19.55527 -18.44695 -17.01203 -16.32113 -15.95429 -15.80104 -15.66189 -15.27791 -15.13421 -14.99717 -14.83700 -14.43028 -14.13346 -13.84078 -13.64532 -12.70995 -12.63174 -12.26640 -11.98714 -11.62770 -11.46994 -11.34890 -11.16382 -11.13112 -10.88659 -10.60282 -10.53040 -10.27972 -10.10024 -9.96950 -9.70697 -9.45657 -9.15331 -8.32172 -7.88684 -7.61973 -6.39087 -5.65700 -3.30180 1.62181 1.76197 3.28629 3.39506 3.45019 3.46635 4.01810 4.09753 4.53846 4.56889 5.10139 5.15999 5.21249 5.28390 5.30476 5.36407 5.44276 5.48939 5.51093 5.56276 5.59523 5.66151 5.87160 6.11509 6.25553 6.34368 6.41918 6.48443 6.52740 6.61277 6.67258 6.81225 6.83423 7.16568 7.20869 7.36189 7.69980 7.77835 7.91362 7.95312 8.63760 9.28443 9.90408 10.49403 11.30271 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.008265 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.808558 B = 3386.972977 C = 5018.376897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.185 3.815 4 C -0.286 4.286 5 C 0.150 3.850 6 F -0.146 7.146 7 C -0.286 4.286 8 C 0.207 3.793 9 O -0.266 6.266 10 C 0.026 3.974 11 C -0.147 4.147 12 C 0.197 3.803 13 N -0.539 5.539 14 C -0.254 4.254 15 H 0.056 0.944 16 C 0.035 3.965 17 N -0.879 5.879 18 Si 0.888 3.112 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.128 3.872 23 C -0.200 4.200 24 C -0.221 4.221 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.253 0.747 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 5.504 -2.149 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.210 6.210 3 C 0.138 3.862 4 C -0.306 4.306 5 C 0.131 3.869 6 F -0.124 7.124 7 C -0.305 4.305 8 C 0.159 3.841 9 O -0.176 6.176 10 C -0.070 4.070 11 C -0.151 4.151 12 C 0.072 3.928 13 N -0.254 5.254 14 C -0.383 4.383 15 H 0.074 0.926 16 C -0.166 4.166 17 N -0.520 5.520 18 Si 0.718 3.282 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.019 3.981 23 C -0.238 4.238 24 C -0.262 4.262 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.261 5.119 -2.251 10.819 hybrid contribution 0.259 1.388 0.503 1.499 sum -9.002 6.508 -1.748 11.245 Atomic orbital electron populations 1.23032 0.79168 1.03619 1.01031 1.86171 1.20497 1.26145 1.88177 1.18105 0.90996 0.83298 0.93806 1.20835 1.00280 0.91214 1.18235 1.16822 0.88307 0.81175 1.00645 1.91442 1.77270 1.49752 1.93975 1.20968 0.92770 0.99089 1.17722 1.18130 0.83111 0.91640 0.91198 1.86450 1.15838 1.28535 1.86796 1.23046 0.99362 0.84116 1.00478 1.19827 0.90721 0.97477 1.07101 1.19693 0.98329 0.87621 0.87193 1.43252 1.22253 1.48787 1.11113 1.18826 0.85535 1.37646 0.96291 0.92634 1.25028 0.96294 0.97483 0.97825 1.70000 1.26643 1.38701 1.16661 0.86653 0.81781 0.81600 0.78213 1.21225 1.21764 1.20610 1.21281 0.93337 0.90619 0.92894 1.23023 1.02502 1.05509 0.92813 1.23333 1.02377 0.94101 1.06371 0.92887 0.92962 0.88395 0.85117 0.84987 0.88738 0.93243 0.92991 0.94087 0.87341 0.93660 0.89080 0.88629 0.91171 0.91498 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.97 8.27 -19.42 -0.16 -5.13 16 3 C 0.18 3.37 6.65 -39.25 -0.26 3.11 16 4 C -0.29 -4.66 9.01 -39.34 -0.35 -5.01 16 5 C 0.15 2.53 7.29 -39.46 -0.29 2.25 16 6 F -0.15 -2.32 17.27 2.25 0.04 -2.28 16 7 C -0.29 -4.97 9.01 -39.34 -0.35 -5.32 16 8 C 0.21 4.16 6.65 -39.25 -0.26 3.89 16 9 O -0.27 -5.52 9.07 -19.39 -0.18 -5.69 16 10 C 0.03 0.41 9.81 101.05 0.99 1.40 16 11 C -0.15 -3.07 5.49 -104.31 -0.57 -3.65 16 12 C 0.20 4.67 5.01 -5.19 -0.03 4.65 16 13 N -0.54 -13.34 2.73 -167.02 -0.46 -13.80 16 14 C -0.25 -6.76 8.45 -15.06 -0.13 -6.88 16 15 H 0.06 1.53 6.78 -52.48 -0.36 1.17 16 16 C 0.03 0.93 4.53 -17.43 -0.08 0.85 16 17 N -0.88 -24.49 11.48 55.49 0.64 -23.85 16 18 Si 0.89 21.15 29.60 -169.99 -5.03 16.12 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.13 2.83 6.56 -67.93 -0.45 2.39 16 23 C -0.20 -4.14 9.80 -26.70 -0.26 -4.40 16 24 C -0.22 -4.69 10.36 -26.69 -0.28 -4.96 16 25 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.13 1.77 6.29 -52.48 -0.33 1.44 16 29 H 0.13 2.00 6.29 -52.48 -0.33 1.67 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 33 H 0.04 0.96 7.46 -51.93 -0.39 0.57 16 34 H 0.11 2.86 4.99 -51.93 -0.26 2.60 16 35 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 36 H 0.09 1.90 6.83 -51.93 -0.35 1.55 16 37 H 0.10 2.15 6.48 -51.93 -0.34 1.81 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -29.23 332.96 -6.65 -35.88 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.19 Total: 4.15 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.33 Total: -10.40 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.18 Total: -37.65 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.34 Total: -10.83 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.23 -6.65 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.255 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds