Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99825 * 2 1 4 4 C 1.38730 * 120.01431 * 0.02562 * 3 2 1 5 5 C 1.38398 * 120.02945 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.97253 * 179.97438 * 5 4 3 7 7 C 1.38400 * 120.06122 * 0.02562 * 5 4 3 8 8 C 1.38734 * 120.03110 * 359.97438 * 7 5 4 9 9 O 1.35889 * 120.02064 * 180.02562 * 8 7 5 10 10 C 1.42905 * 116.99536 * 359.97438 * 9 8 7 11 11 C 1.38649 * 120.01637 * 180.02562 * 3 2 1 12 12 C 1.50707 * 120.02925 * 0.02562 * 11 3 2 13 13 N 1.46507 * 109.46845 * 270.00321 * 12 11 3 14 14 C 1.36936 * 119.99593 * 269.99616 * 13 12 11 15 15 H 1.08003 * 119.99271 * 139.86127 * 14 13 12 16 16 C 1.38803 * 120.00398 * 319.86607 * 14 13 12 17 17 N 1.31624 * 119.99710 * 341.30115 * 16 14 13 18 18 Si 1.86803 * 120.00066 * 161.30676 * 16 14 13 19 19 H 1.48501 * 109.47104 * 59.99888 * 18 16 14 20 20 H 1.48504 * 109.46812 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47155 * 299.99591 * 18 16 14 22 22 C 1.46502 * 120.00087 * 90.00023 * 13 12 11 23 23 C 1.52995 * 117.49971 * 183.19032 * 22 13 12 24 24 C 1.52999 * 117.49862 * 114.52880 * 22 13 12 25 25 H 1.08997 * 109.47338 * 299.99309 * 1 2 3 26 26 H 1.09003 * 109.47703 * 59.99831 * 1 2 3 27 27 H 1.09008 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.98394 * 0.24818 * 4 3 2 29 29 H 1.08003 * 119.98827 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46567 * 180.02562 * 10 9 8 31 31 H 1.08998 * 109.47355 * 299.99679 * 10 9 8 32 32 H 1.08994 * 109.47030 * 60.00507 * 10 9 8 33 33 H 1.08997 * 109.47092 * 29.99532 * 12 11 3 34 34 H 1.08993 * 109.47310 * 150.00588 * 12 11 3 35 35 H 0.96997 * 119.99546 * 175.01813 * 17 16 14 36 36 H 1.09007 * 115.54802 * 328.85842 * 22 13 12 37 37 H 1.09004 * 117.49644 * 359.97438 * 23 22 13 38 38 H 1.08992 * 117.50306 * 145.01663 * 23 22 13 39 39 H 1.08997 * 117.49625 * 214.97613 * 24 22 13 40 40 H 1.09000 * 117.49980 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3745 0.0005 5 6 1.9185 3.6078 0.0011 6 9 1.1818 4.7403 0.0011 7 6 3.3005 3.6822 0.0005 8 6 4.0583 2.5201 0.0000 9 8 5.4153 2.5933 0.0000 10 6 5.9944 3.8997 0.0000 11 6 3.4305 1.2839 -0.0005 12 6 4.2523 0.0206 -0.0017 13 7 4.5191 -0.3896 1.3792 14 6 5.6379 0.0654 2.0245 15 1 5.5822 0.3528 3.0641 16 6 6.8434 0.1572 1.3427 17 7 7.0198 -0.5144 0.2245 18 14 8.2155 1.2337 2.0120 19 1 8.6034 0.7576 3.3641 20 1 9.3896 1.1596 1.1058 21 1 7.7444 2.6393 2.0985 22 6 3.5890 -1.2866 2.0696 23 6 3.8833 -1.6186 3.5338 24 6 4.1002 -2.6776 2.4500 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2120 2.3179 0.0050 29 1 3.7893 4.6452 0.0005 30 1 7.0811 3.8153 -0.0005 31 1 5.6720 4.4401 -0.8900 32 1 5.6720 4.4401 0.8900 33 1 3.7042 -0.7689 -0.5157 34 1 5.1962 0.2017 -0.5157 35 1 7.8334 -0.3948 -0.2898 36 1 2.5436 -1.1980 1.7739 37 1 4.7692 -1.1699 3.9834 38 1 3.0316 -1.7488 4.2014 39 1 3.3910 -3.5040 2.4051 40 1 5.1283 -2.9255 2.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -51.635088 kcal Electronic energy + Delta-G solvation = -25208.590814 eV Core-core repulsion = 21519.279432 eV Total energy + Delta-G solvation = -3689.311383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.94636 -41.42911 -39.87302 -38.52833 -37.08204 -35.27468 -33.22031 -31.07289 -30.63103 -28.68044 -27.82849 -26.93816 -25.21521 -22.99813 -22.97654 -22.55014 -21.37896 -19.75574 -18.35117 -18.19377 -17.28896 -17.14992 -16.98285 -16.92383 -16.44658 -16.33157 -16.31212 -16.12654 -15.55335 -15.32866 -15.15838 -14.44296 -13.94400 -13.72624 -13.55636 -13.17630 -12.94310 -12.76141 -12.64142 -12.46098 -12.34995 -12.30055 -12.26418 -12.03838 -11.72341 -11.59087 -11.35419 -11.22120 -10.85029 -10.32633 -9.19737 -9.07955 -8.35123 -7.64476 -5.34517 0.23212 0.40741 1.47082 1.48097 1.55344 2.08671 2.55254 2.66979 2.84786 3.21086 3.31614 3.54008 3.75627 3.97795 4.01639 4.02261 4.12316 4.29957 4.37404 4.41020 4.44313 4.47659 4.56948 4.65747 4.66681 4.78636 4.90647 4.97311 5.03931 5.05643 5.13529 5.17332 5.45028 5.45801 5.58923 5.61354 5.78888 5.92013 6.47622 6.55871 6.63236 7.30960 7.97950 8.52760 9.26669 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.008265 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.808558 B = 3386.972977 C = 5018.376897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.191 3.809 4 C -0.278 4.278 5 C 0.156 3.844 6 F -0.137 7.137 7 C -0.286 4.286 8 C 0.195 3.805 9 O -0.301 6.301 10 C 0.017 3.983 11 C -0.181 4.181 12 C 0.210 3.790 13 N -0.553 5.553 14 C -0.254 4.254 15 H 0.042 0.958 16 C 0.000 4.000 17 N -0.907 5.907 18 Si 0.932 3.068 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.263 1.263 22 C 0.110 3.890 23 C -0.186 4.186 24 C -0.217 4.217 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 6.734 -1.662 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.143 3.857 4 C -0.298 4.298 5 C 0.137 3.863 6 F -0.115 7.115 7 C -0.305 4.305 8 C 0.147 3.853 9 O -0.212 6.212 10 C -0.078 4.078 11 C -0.185 4.185 12 C 0.085 3.915 13 N -0.270 5.270 14 C -0.384 4.384 15 H 0.060 0.940 16 C -0.198 4.198 17 N -0.550 5.550 18 Si 0.760 3.240 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.188 1.188 22 C 0.002 3.998 23 C -0.224 4.224 24 C -0.258 4.258 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.181 0.819 29 H 0.171 0.829 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.680 6.368 -1.759 13.419 hybrid contribution 0.863 0.990 0.332 1.354 sum -10.817 7.358 -1.427 13.159 Atomic orbital electron populations 1.23415 0.76298 1.05704 1.02414 1.86150 1.23457 1.25649 1.87798 1.18078 0.90224 0.84553 0.92808 1.21060 1.01742 0.90127 1.16853 1.16904 0.88221 0.81661 0.99554 1.91470 1.76958 1.49314 1.93780 1.21091 0.93082 0.99099 1.17273 1.18273 0.83138 0.92211 0.91711 1.86395 1.16548 1.31181 1.87104 1.23286 0.99332 0.82877 1.02303 1.19669 0.91957 0.96545 1.10337 1.19298 0.97112 0.88824 0.86284 1.43396 1.22402 1.49831 1.11344 1.18816 0.86438 1.37299 0.95840 0.94006 1.25493 0.97807 0.98493 0.98053 1.70120 1.26903 1.40164 1.17862 0.85953 0.79621 0.81262 0.77129 1.21713 1.22033 1.18841 1.21503 0.93674 0.90741 0.93862 1.23009 1.02727 1.04207 0.92493 1.23244 1.01025 0.94892 1.06607 0.91655 0.91257 0.86180 0.81949 0.82857 0.88691 0.90503 0.91976 0.95201 0.90557 0.94272 0.87461 0.90991 0.87572 0.88284 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -10.05 8.27 -92.39 -0.76 -10.81 16 3 C 0.19 6.68 6.65 22.49 0.15 6.83 16 4 C -0.28 -8.23 9.01 22.43 0.20 -8.03 16 5 C 0.16 4.82 7.29 22.35 0.16 4.98 16 6 F -0.14 -3.87 17.27 44.97 0.78 -3.09 16 7 C -0.29 -9.39 9.01 22.43 0.20 -9.19 16 8 C 0.19 7.74 6.65 22.49 0.15 7.89 16 9 O -0.30 -12.59 9.07 -92.30 -0.84 -13.43 16 10 C 0.02 0.51 9.81 113.37 1.11 1.63 16 11 C -0.18 -7.60 5.49 -19.66 -0.11 -7.71 16 12 C 0.21 10.29 5.01 85.63 0.43 10.71 16 13 N -0.55 -28.02 2.73 -682.33 -1.86 -29.88 16 14 C -0.25 -13.91 8.45 84.03 0.71 -13.20 16 15 H 0.04 2.37 6.78 -2.91 -0.02 2.35 16 16 C 0.00 0.01 4.53 84.86 0.38 0.39 16 17 N -0.91 -52.66 11.48 21.65 0.25 -52.41 16 18 Si 0.93 44.21 29.60 68.60 2.03 46.24 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.11 4.87 6.56 44.99 0.30 5.16 16 23 C -0.19 -7.52 9.80 30.62 0.30 -7.22 16 24 C -0.22 -9.12 10.36 30.62 0.32 -8.80 16 25 H 0.06 1.12 7.65 -2.39 -0.02 1.11 16 26 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 27 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.16 3.68 6.29 -2.91 -0.02 3.67 16 29 H 0.15 4.24 6.29 -2.91 -0.02 4.22 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.08 1.89 7.66 -2.39 -0.02 1.87 16 32 H 0.06 1.74 7.66 -2.39 -0.02 1.72 16 33 H 0.03 1.45 7.46 -2.39 -0.02 1.43 16 34 H 0.08 4.24 4.99 -2.39 -0.01 4.22 16 35 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 36 H 0.11 4.34 6.83 -2.38 -0.02 4.32 16 37 H 0.07 3.26 6.48 -2.39 -0.02 3.24 16 38 H 0.11 3.50 8.14 -2.39 -0.02 3.49 16 39 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -65.14 332.96 6.08 -59.06 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.06 Total: 19.46 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.42 Total: -15.14 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.61 Total: -82.29 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.60 Total: -24.24 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.14 6.08 -59.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.429 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds