Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.52995 * 109.47432 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46646 * 62.56575 * 4 3 2 6 6 C 1.46893 * 111.00108 * 71.05930 * 5 4 3 7 7 C 1.50700 * 109.47223 * 55.79613 * 6 5 4 8 8 C 1.33385 * 125.20418 * 99.01167 * 7 6 5 9 9 C 1.38428 * 114.92145 * 179.97438 * 8 7 6 10 10 C 1.33390 * 114.92132 * 359.97438 * 9 8 7 11 11 S 1.75882 * 109.59098 * 359.76207 * 10 9 8 12 12 C 1.46909 * 110.99556 * 195.00978 * 5 4 3 13 13 C 1.53001 * 109.46583 * 161.10501 * 12 5 4 14 14 C 1.50699 * 115.55087 * 318.32621 * 13 12 5 15 15 H 1.08000 * 119.99597 * 93.92068 * 14 13 12 16 16 C 1.37877 * 120.00316 * 273.92122 * 14 13 12 17 17 N 1.31514 * 119.99970 * 5.77009 * 16 14 13 18 18 Si 1.86800 * 120.00141 * 185.77675 * 16 14 13 19 19 H 1.48496 * 109.47124 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47178 * 300.00179 * 18 16 14 21 21 H 1.48503 * 109.46993 * 59.99848 * 18 16 14 22 22 C 1.53003 * 117.50270 * 104.00297 * 13 12 5 23 23 C 1.53008 * 117.49741 * 172.66246 * 13 12 5 24 24 H 1.08997 * 109.46896 * 299.99817 * 1 2 3 25 25 H 1.09002 * 109.46782 * 59.99880 * 1 2 3 26 26 H 1.08990 * 109.46573 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46992 * 59.99971 * 3 2 1 28 28 H 1.09002 * 109.47519 * 300.00538 * 3 2 1 29 29 H 1.08999 * 109.47138 * 302.57079 * 4 3 2 30 30 H 1.08996 * 109.47549 * 182.56645 * 4 3 2 31 31 H 1.09003 * 109.47775 * 175.79924 * 6 5 4 32 32 H 1.09002 * 109.47237 * 295.79803 * 6 5 4 33 33 H 1.07998 * 122.53911 * 359.94722 * 8 7 6 34 34 H 1.08003 * 122.53890 * 180.02562 * 9 8 7 35 35 H 1.07999 * 125.20151 * 180.02562 * 10 9 8 36 36 H 1.08993 * 109.47343 * 41.10598 * 12 5 4 37 37 H 1.08993 * 109.47098 * 281.09864 * 12 5 4 38 38 H 0.97008 * 120.00031 * 355.14324 * 17 16 14 39 39 H 1.08995 * 117.49781 * 214.99910 * 22 13 12 40 40 H 1.08996 * 117.49326 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49598 * 359.97175 * 23 13 12 42 42 H 1.08993 * 117.49819 * 144.96559 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9737 0.5098 -1.2283 6 6 3.7981 1.3804 -2.3984 7 6 4.5309 2.6778 -2.1736 8 6 5.7378 2.9733 -2.6588 9 6 6.2111 4.2293 -2.3201 10 6 5.3883 4.9540 -1.5604 11 16 3.9220 4.0375 -1.2386 12 6 5.3668 0.0579 -1.1127 13 6 5.6428 -1.0182 -2.1647 14 6 4.5475 -2.0353 -2.3569 15 1 3.8029 -1.8883 -3.1252 16 6 4.4960 -3.1535 -1.5519 17 7 5.3322 -3.2775 -0.5444 18 14 3.2387 -4.4924 -1.8923 19 1 3.3896 -5.5791 -0.8917 20 1 1.8708 -3.9215 -1.8014 21 1 3.4564 -5.0410 -3.2550 22 6 6.4522 -0.6102 -3.3972 23 6 7.0873 -1.4971 -2.3233 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8537 0.6048 0.8669 30 1 3.9787 2.1795 0.0467 31 1 4.1986 0.8854 -3.2831 32 1 2.7371 1.5830 -2.5445 33 1 6.3030 2.2847 -3.2692 34 1 7.1733 4.5951 -2.6470 35 1 5.5898 5.9525 -1.2016 36 1 5.5333 -0.3552 -0.1179 37 1 6.0370 0.9024 -1.2724 38 1 6.0305 -2.6178 -0.4096 39 1 6.1925 -1.0774 -4.3471 40 1 6.7885 0.4248 -3.4584 41 1 7.8410 -1.0450 -1.6785 42 1 7.2454 -2.5478 -2.5662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602758990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = 27.257446 kcal Electronic energy + Delta-G solvation = -22821.229834 eV Core-core repulsion = 19701.552664 eV Total energy + Delta-G solvation = -3119.677170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.87394 -37.40972 -36.87876 -35.26226 -31.60188 -30.44724 -29.22059 -26.48621 -25.98381 -24.76653 -23.73683 -23.05796 -21.26676 -20.51402 -19.16189 -18.93384 -16.91803 -16.30485 -16.22639 -15.86535 -15.32494 -14.86293 -14.50235 -14.35088 -13.81430 -13.55617 -13.13983 -12.75720 -12.62529 -12.44239 -12.34939 -12.16575 -12.00401 -11.53653 -11.32632 -11.05380 -10.99311 -10.75733 -10.61720 -10.59762 -10.40914 -10.27397 -9.94857 -9.37268 -9.23263 -8.60117 -8.36701 -8.26246 -8.20859 -8.08009 -7.40459 -6.07301 -3.74797 1.10673 1.74626 2.10067 2.87585 3.58074 3.63158 3.79083 4.21477 4.53235 4.74775 5.02363 5.11995 5.22537 5.37049 5.45383 5.50611 5.59202 5.63833 5.65293 5.66921 5.70322 5.79380 5.88070 5.98558 6.10687 6.15326 6.23659 6.29937 6.32548 6.43112 6.45107 6.51076 6.61625 6.67404 6.79212 6.95216 7.34172 7.35264 7.58693 7.83263 7.93907 8.53324 8.69861 9.15825 9.95247 11.33322 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.006723 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.063844 B = 4163.860341 C = 5660.994427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.073 3.927 4 C 0.038 3.962 5 N -0.471 5.471 6 C 0.122 3.878 7 C -0.189 4.189 8 C -0.139 4.139 9 C -0.129 4.129 10 C -0.230 4.230 11 S 0.083 5.917 12 C 0.094 3.906 13 C 0.038 3.962 14 C -0.532 4.532 15 H 0.049 0.951 16 C 0.030 3.970 17 N -0.917 5.917 18 Si 1.063 2.937 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.294 1.294 22 C -0.205 4.205 23 C -0.183 4.183 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.270 0.730 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 14.890 -0.600 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C -0.005 4.005 4 C -0.091 4.091 5 N -0.190 5.190 6 C -0.008 4.008 7 C -0.308 4.308 8 C -0.170 4.170 9 C -0.160 4.160 10 C -0.366 4.366 11 S 0.345 5.655 12 C -0.033 4.033 13 C 0.037 3.963 14 C -0.570 4.570 15 H 0.067 0.933 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.893 3.107 19 H -0.213 1.213 20 H -0.214 1.214 21 H -0.221 1.221 22 C -0.242 4.242 23 C -0.221 4.221 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.810 13.120 0.733 14.368 hybrid contribution 2.339 2.349 -1.191 3.522 sum -3.471 15.469 -0.459 15.860 Atomic orbital electron populations 1.22688 0.82672 1.02442 0.98792 1.88204 1.17914 1.26421 1.94956 1.22469 0.94020 0.85358 0.98648 1.22509 0.93561 0.98082 0.94987 1.62177 1.22860 1.33696 1.00287 1.21042 0.98368 0.84513 0.96878 1.25825 1.00431 1.00602 1.03988 1.20288 0.96033 0.97225 1.03436 1.20189 1.00969 0.94657 1.00205 1.25587 0.99295 1.04189 1.07480 1.84204 1.20694 1.07826 1.52733 1.21812 0.85860 0.95332 1.00345 1.19097 0.90583 0.95190 0.91419 1.20951 1.11126 1.04531 1.20405 0.93312 1.25508 1.00283 0.98870 0.92778 1.70729 1.17707 1.39806 1.27091 0.83636 0.75881 0.75961 0.75236 1.21331 1.21421 1.22087 1.23007 1.08756 0.97133 0.95284 1.22749 0.98246 0.98737 1.02334 0.95076 0.94751 0.89873 0.93982 0.94147 0.90151 0.93088 0.88059 0.90691 0.84170 0.84761 0.82495 0.91908 0.96845 0.91865 0.90399 0.91992 0.91985 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -6.80 10.61 -35.23 -0.37 -7.17 16 3 C 0.07 1.16 6.04 37.16 0.22 1.39 16 4 C 0.04 0.67 4.99 -3.82 -0.02 0.65 16 5 N -0.47 -9.48 3.89 -236.08 -0.92 -10.40 16 6 C 0.12 2.15 5.55 -4.98 -0.03 2.12 16 7 C -0.19 -2.90 4.41 -36.00 -0.16 -3.06 16 8 C -0.14 -2.06 8.88 -41.21 -0.37 -2.43 16 9 C -0.13 -1.65 10.18 -41.21 -0.42 -2.07 16 10 C -0.23 -2.77 11.23 29.04 0.33 -2.44 16 11 S 0.08 1.08 20.81 -107.50 -2.24 -1.16 16 12 C 0.09 2.05 4.91 -3.82 -0.02 2.03 16 13 C 0.04 0.91 0.64 -155.65 -0.10 0.81 16 14 C -0.53 -14.56 8.21 -34.44 -0.28 -14.84 16 15 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 16 C 0.03 0.84 5.39 -17.82 -0.10 0.75 16 17 N -0.92 -27.49 13.56 55.43 0.75 -26.74 16 18 Si 1.06 26.07 29.91 -169.99 -5.08 20.99 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.20 -4.33 9.23 -26.69 -0.25 -4.57 16 23 C -0.18 -4.20 8.56 -26.69 -0.23 -4.43 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.61 6.72 -51.93 -0.35 0.26 16 29 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 30 H 0.05 0.82 4.54 -41.72 -0.19 0.63 16 31 H 0.10 1.93 6.85 -51.93 -0.36 1.58 16 32 H 0.07 1.26 6.79 -51.93 -0.35 0.90 16 33 H 0.14 2.11 6.29 -52.49 -0.33 1.78 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.06 1.51 7.44 -51.93 -0.39 1.12 16 37 H 0.01 0.28 5.96 -51.93 -0.31 -0.03 16 38 H 0.27 8.00 6.18 -40.82 -0.25 7.75 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.06 1.16 6.33 -51.93 -0.33 0.83 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -30.67 345.07 -9.23 -39.89 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.27 Total: 3.93 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.30 Total: -24.54 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.17 Total: -37.14 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.37 Total: -7.17 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.24 Total: -1.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.67 -9.23 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602758990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.151 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds