Wall clock time and date at job start Tue Mar 31 2020 07:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.52995 * 109.47432 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46646 * 62.56575 * 4 3 2 6 6 C 1.46893 * 111.00108 * 71.05930 * 5 4 3 7 7 C 1.50700 * 109.47223 * 55.79613 * 6 5 4 8 8 C 1.33385 * 125.20418 * 99.01167 * 7 6 5 9 9 C 1.38428 * 114.92145 * 179.97438 * 8 7 6 10 10 C 1.33390 * 114.92132 * 359.97438 * 9 8 7 11 11 S 1.75882 * 109.59098 * 359.76207 * 10 9 8 12 12 C 1.46909 * 110.99556 * 195.00978 * 5 4 3 13 13 C 1.53001 * 109.46583 * 161.10501 * 12 5 4 14 14 C 1.50699 * 115.55087 * 318.32621 * 13 12 5 15 15 H 1.08000 * 119.99597 * 93.92068 * 14 13 12 16 16 C 1.37877 * 120.00316 * 273.92122 * 14 13 12 17 17 N 1.31514 * 119.99970 * 5.77009 * 16 14 13 18 18 Si 1.86800 * 120.00141 * 185.77675 * 16 14 13 19 19 H 1.48496 * 109.47124 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47178 * 300.00179 * 18 16 14 21 21 H 1.48503 * 109.46993 * 59.99848 * 18 16 14 22 22 C 1.53003 * 117.50270 * 104.00297 * 13 12 5 23 23 C 1.53008 * 117.49741 * 172.66246 * 13 12 5 24 24 H 1.08997 * 109.46896 * 299.99817 * 1 2 3 25 25 H 1.09002 * 109.46782 * 59.99880 * 1 2 3 26 26 H 1.08990 * 109.46573 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46992 * 59.99971 * 3 2 1 28 28 H 1.09002 * 109.47519 * 300.00538 * 3 2 1 29 29 H 1.08999 * 109.47138 * 302.57079 * 4 3 2 30 30 H 1.08996 * 109.47549 * 182.56645 * 4 3 2 31 31 H 1.09003 * 109.47775 * 175.79924 * 6 5 4 32 32 H 1.09002 * 109.47237 * 295.79803 * 6 5 4 33 33 H 1.07998 * 122.53911 * 359.94722 * 8 7 6 34 34 H 1.08003 * 122.53890 * 180.02562 * 9 8 7 35 35 H 1.07999 * 125.20151 * 180.02562 * 10 9 8 36 36 H 1.08993 * 109.47343 * 41.10598 * 12 5 4 37 37 H 1.08993 * 109.47098 * 281.09864 * 12 5 4 38 38 H 0.97008 * 120.00031 * 355.14324 * 17 16 14 39 39 H 1.08995 * 117.49781 * 214.99910 * 22 13 12 40 40 H 1.08996 * 117.49326 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49598 * 359.97175 * 23 13 12 42 42 H 1.08993 * 117.49819 * 144.96559 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9737 0.5098 -1.2283 6 6 3.7981 1.3804 -2.3984 7 6 4.5309 2.6778 -2.1736 8 6 5.7378 2.9733 -2.6588 9 6 6.2111 4.2293 -2.3201 10 6 5.3883 4.9540 -1.5604 11 16 3.9220 4.0375 -1.2386 12 6 5.3668 0.0579 -1.1127 13 6 5.6428 -1.0182 -2.1647 14 6 4.5475 -2.0353 -2.3569 15 1 3.8029 -1.8883 -3.1252 16 6 4.4960 -3.1535 -1.5519 17 7 5.3322 -3.2775 -0.5444 18 14 3.2387 -4.4924 -1.8923 19 1 3.3896 -5.5791 -0.8917 20 1 1.8708 -3.9215 -1.8014 21 1 3.4564 -5.0410 -3.2550 22 6 6.4522 -0.6102 -3.3972 23 6 7.0873 -1.4971 -2.3233 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8537 0.6048 0.8669 30 1 3.9787 2.1795 0.0467 31 1 4.1986 0.8854 -3.2831 32 1 2.7371 1.5830 -2.5445 33 1 6.3030 2.2847 -3.2692 34 1 7.1733 4.5951 -2.6470 35 1 5.5898 5.9525 -1.2016 36 1 5.5333 -0.3552 -0.1179 37 1 6.0370 0.9024 -1.2724 38 1 6.0305 -2.6178 -0.4096 39 1 6.1925 -1.0774 -4.3471 40 1 6.7885 0.4248 -3.4584 41 1 7.8410 -1.0450 -1.6785 42 1 7.2454 -2.5478 -2.5662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602758990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:29 Heat of formation + Delta-G solvation = 9.164750 kcal Electronic energy + Delta-G solvation = -22822.014392 eV Core-core repulsion = 19701.552664 eV Total energy + Delta-G solvation = -3120.461728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29683 -38.65232 -38.38031 -36.76940 -33.73177 -31.65170 -30.61685 -27.84206 -27.21377 -26.79865 -25.19288 -24.26157 -23.03611 -21.88607 -21.06555 -20.05062 -18.48615 -17.78532 -17.56117 -17.21431 -16.44144 -16.34199 -15.83071 -15.73692 -15.56936 -15.42785 -14.65680 -14.23041 -14.06311 -13.83448 -13.57805 -13.48837 -13.31808 -12.94903 -12.88878 -12.56705 -12.51289 -12.45188 -12.23901 -12.10540 -11.91866 -11.82310 -11.66578 -11.16862 -10.48646 -10.33503 -10.26800 -10.08045 -9.64521 -9.34892 -8.86698 -8.31284 -5.97372 0.06011 0.70234 1.07808 1.57283 1.66548 1.82919 1.83047 2.70803 2.97804 3.07775 3.40389 3.47539 3.85137 4.07194 4.14651 4.19043 4.24326 4.33306 4.39621 4.47853 4.49721 4.54222 4.59065 4.61953 4.66712 4.68627 4.74343 4.87429 4.88426 4.90452 4.92159 5.02241 5.12152 5.24409 5.39872 5.48150 5.56226 5.59936 6.23287 6.29590 6.42361 6.51652 6.54235 6.96764 7.77845 9.10671 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.006723 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.063844 B = 4163.860341 C = 5660.994427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.075 3.925 4 C 0.040 3.960 5 N -0.496 5.496 6 C 0.132 3.868 7 C -0.218 4.218 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.216 4.216 11 S 0.102 5.898 12 C 0.114 3.886 13 C 0.014 3.986 14 C -0.529 4.529 15 H 0.034 0.966 16 C -0.018 4.018 17 N -0.946 5.946 18 Si 1.100 2.900 19 H -0.292 1.292 20 H -0.281 1.281 21 H -0.277 1.277 22 C -0.175 4.175 23 C -0.188 4.188 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 17.513 -0.943 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.001 4.001 4 C -0.089 4.089 5 N -0.217 5.217 6 C 0.002 3.998 7 C -0.337 4.337 8 C -0.172 4.172 9 C -0.172 4.172 10 C -0.351 4.351 11 S 0.365 5.635 12 C -0.015 4.015 13 C 0.013 3.987 14 C -0.567 4.567 15 H 0.052 0.948 16 C -0.216 4.216 17 N -0.584 5.584 18 Si 0.926 3.074 19 H -0.218 1.218 20 H -0.207 1.207 21 H -0.203 1.203 22 C -0.212 4.212 23 C -0.226 4.226 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.175 0.825 35 H 0.206 0.794 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.258 15.766 0.369 16.967 hybrid contribution 2.463 1.646 -1.123 3.168 sum -3.796 17.411 -0.754 17.836 Atomic orbital electron populations 1.22852 0.80544 1.02966 1.00615 1.88131 1.20508 1.28292 1.95339 1.22525 0.92520 0.84720 1.00374 1.22529 0.95107 0.98263 0.93013 1.62074 1.21634 1.35936 1.02035 1.20761 0.98797 0.85280 0.94960 1.25513 1.01033 1.00900 1.06233 1.20425 0.95707 0.98101 1.02966 1.20378 1.02247 0.93878 1.00689 1.26013 0.98000 1.05109 1.06020 1.84082 1.21050 1.06609 1.51786 1.21451 0.87616 0.94871 0.97523 1.19139 0.89987 0.95738 0.93824 1.21152 1.11301 1.05137 1.19123 0.94815 1.26581 1.01378 1.01049 0.92629 1.70822 1.18814 1.40199 1.28612 0.83140 0.74507 0.74037 0.75750 1.21801 1.20695 1.20273 1.22971 1.06111 0.98229 0.93917 1.22661 0.98294 0.97869 1.03778 0.92598 0.93456 0.90137 0.91235 0.93115 0.92651 0.91222 0.90174 0.90276 0.84893 0.82450 0.79386 0.95220 0.95393 0.92820 0.90768 0.89011 0.90521 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -15.24 10.61 -148.98 -1.58 -16.82 16 3 C 0.08 2.33 6.04 71.98 0.43 2.76 16 4 C 0.04 1.40 4.99 86.30 0.43 1.83 16 5 N -0.50 -20.17 3.89 -900.81 -3.50 -23.67 16 6 C 0.13 4.58 5.55 85.56 0.48 5.06 16 7 C -0.22 -6.33 4.41 24.59 0.11 -6.22 16 8 C -0.14 -3.85 8.88 21.22 0.19 -3.67 16 9 C -0.14 -3.15 10.18 21.22 0.22 -2.93 16 10 C -0.22 -4.33 11.23 66.72 0.75 -3.58 16 11 S 0.10 2.36 20.81 -56.49 -1.18 1.19 16 12 C 0.11 5.03 4.91 86.30 0.42 5.46 16 13 C 0.01 0.68 0.64 -52.92 -0.03 0.64 16 14 C -0.53 -29.59 8.21 25.60 0.21 -29.38 16 15 H 0.03 1.94 7.82 -2.91 -0.02 1.92 16 16 C -0.02 -1.06 5.39 84.65 0.46 -0.60 16 17 N -0.95 -58.47 13.56 21.45 0.29 -58.18 16 18 Si 1.10 53.49 29.91 68.60 2.05 55.54 16 19 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.18 -7.31 9.23 30.62 0.28 -7.02 16 23 C -0.19 -8.75 8.56 30.62 0.26 -8.48 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.05 1.44 6.72 -2.39 -0.02 1.43 16 29 H 0.05 2.19 7.71 -2.39 -0.02 2.17 16 30 H 0.07 2.15 4.54 -8.88 -0.04 2.11 16 31 H 0.08 3.07 6.85 -2.39 -0.02 3.05 16 32 H 0.08 2.61 6.79 -2.39 -0.02 2.59 16 33 H 0.13 3.75 6.29 -2.91 -0.02 3.74 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.03 1.48 7.44 -2.39 -0.02 1.46 16 37 H 0.03 1.14 5.96 -2.39 -0.01 1.12 16 38 H 0.26 16.10 6.18 -92.70 -0.57 15.52 16 39 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.27 6.33 -2.39 -0.02 3.26 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -67.60 345.07 2.70 -64.90 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 1.17 Total: 21.21 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 5.45 Total: -44.16 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.21 Total: -81.85 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.58 Total: -16.82 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.05 Total: 55.54 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.18 Total: 1.19 kcal Total: -67.60 2.70 -64.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602758990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.065 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds