Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00352 * 2 1 4 4 C 1.53005 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46849 * 67.26295 * 4 3 2 6 6 C 1.46907 * 110.99723 * 290.53102 * 5 4 3 7 7 C 1.50698 * 109.47379 * 299.82068 * 6 5 4 8 8 H 1.08000 * 120.00078 * 354.87870 * 7 6 5 9 9 C 1.37873 * 119.99990 * 174.87213 * 7 6 5 10 10 N 1.31512 * 119.99868 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99946 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47579 * 90.00014 * 11 9 7 13 13 H 1.48507 * 109.47232 * 209.99978 * 11 9 7 14 14 H 1.48502 * 109.47216 * 329.99784 * 11 9 7 15 15 C 1.46893 * 111.00402 * 54.48509 * 5 4 3 16 16 C 1.50701 * 109.46894 * 66.04421 * 15 5 4 17 17 C 1.38306 * 119.92262 * 270.27804 * 16 15 5 18 18 C 1.38082 * 120.07990 * 180.23322 * 17 16 15 19 19 C 1.38978 * 119.91847 * 359.48955 * 18 17 16 20 20 S 1.76202 * 120.07597 * 180.27545 * 19 18 17 21 21 C 1.81400 * 102.99487 * 180.02562 * 20 19 18 22 22 C 1.38968 * 119.83828 * 0.25704 * 19 18 17 23 23 C 1.38078 * 119.92390 * 359.97438 * 22 19 18 24 24 H 1.09000 * 109.47500 * 300.00120 * 1 2 3 25 25 H 1.09003 * 109.47033 * 60.00099 * 1 2 3 26 26 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47104 * 59.99884 * 3 2 1 28 28 H 1.08998 * 109.47329 * 299.99854 * 3 2 1 29 29 H 1.09005 * 109.46871 * 307.26382 * 4 3 2 30 30 H 1.09001 * 109.46990 * 187.26316 * 4 3 2 31 31 H 1.08993 * 109.47351 * 59.82644 * 6 5 4 32 32 H 1.09002 * 109.46663 * 179.82718 * 6 5 4 33 33 H 0.97003 * 119.99790 * 179.97438 * 10 9 7 34 34 H 1.08999 * 109.47464 * 306.04638 * 15 5 4 35 35 H 1.08997 * 109.47402 * 186.04193 * 15 5 4 36 36 H 1.07995 * 119.95658 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.03675 * 179.76761 * 18 17 16 38 38 H 1.08998 * 109.47612 * 60.00276 * 21 20 19 39 39 H 1.09010 * 109.46730 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47526 * 299.99768 * 21 20 19 41 41 H 1.08008 * 120.03826 * 180.02562 * 22 19 18 42 42 H 1.08004 * 119.96026 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9818 0.6120 -1.2764 6 6 3.5910 -0.7999 -1.3855 7 6 4.2203 -1.5835 -0.2626 8 1 4.9131 -1.1008 0.4108 9 6 3.9116 -2.9167 -0.0948 10 7 3.0684 -3.5047 -0.9151 11 14 4.6911 -3.8879 1.2975 12 1 3.8348 -3.7934 2.5071 13 1 4.8236 -5.3112 0.8948 14 1 6.0348 -3.3313 1.5976 15 6 3.4665 1.3900 -2.4109 16 6 4.0839 2.7647 -2.3990 17 6 3.4686 3.7914 -1.7061 18 6 4.0289 5.0534 -1.6970 19 6 5.2182 5.2886 -2.3765 20 16 5.9406 6.8957 -2.3616 21 6 7.4357 6.6801 -3.3660 22 6 5.8364 4.2533 -3.0672 23 6 5.2678 2.9951 -3.0759 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8482 0.5357 0.8188 30 1 3.9781 2.1721 0.1306 31 1 2.5060 -0.8825 -1.3227 32 1 3.9311 -1.1981 -2.3415 33 1 2.8515 -4.4428 -0.7972 34 1 2.3831 1.4776 -2.3293 35 1 3.7210 0.8855 -3.3429 36 1 2.5465 3.6068 -1.1750 37 1 3.5458 5.8555 -1.1588 38 1 7.1565 6.3556 -4.3684 39 1 7.9724 7.6270 -3.4265 40 1 8.0771 5.9282 -2.9062 41 1 6.7610 4.4325 -3.5960 42 1 5.7475 2.1901 -3.6129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = -5.319012 kcal Electronic energy + Delta-G solvation = -21872.065275 eV Core-core repulsion = 18750.975485 eV Total energy + Delta-G solvation = -3121.089791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.43408 -37.82352 -35.70290 -32.65693 -31.39080 -31.15232 -29.08588 -28.96664 -27.02351 -25.87099 -24.45578 -22.68998 -22.49964 -21.39672 -19.41253 -17.70264 -16.39037 -16.08804 -15.96451 -15.60610 -15.00971 -14.75939 -14.56582 -14.31946 -14.09453 -13.92229 -13.88850 -13.40243 -13.26510 -12.60859 -12.57031 -12.22649 -11.92534 -11.58900 -11.49785 -11.21822 -11.01678 -10.96596 -10.85826 -10.61837 -10.58827 -10.32376 -10.08361 -9.78993 -9.47551 -9.01303 -8.93997 -8.85958 -8.26552 -7.41270 -7.02939 -5.86291 -3.83744 1.29792 1.43185 1.48757 2.29654 3.40047 3.45718 3.49608 3.78451 4.43434 4.55983 4.82220 4.83797 4.85826 4.98126 5.09092 5.22956 5.38338 5.46547 5.50639 5.51861 5.60464 5.67901 5.73791 5.82148 5.82849 5.89310 6.00517 6.14830 6.20074 6.22261 6.31096 6.34785 6.43897 6.79223 6.87769 7.02228 7.39376 7.77063 7.88267 7.92083 8.17506 8.35263 8.70282 9.21561 9.77205 11.25159 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003715 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.375021 B = 7535.725792 C = 8262.494457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.492 4.492 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.081 3.919 16 C -0.058 4.058 17 C -0.101 4.101 18 C -0.100 4.100 19 C -0.093 4.093 20 S -0.135 6.135 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.081 4.081 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.017 0.983 33 H 0.257 0.743 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 18.298 -3.922 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.058 4.058 4 C -0.068 4.068 5 N -0.248 5.248 6 C 0.057 3.943 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.200 1.200 15 C -0.046 4.046 16 C -0.061 4.061 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.206 4.206 20 S 0.106 5.894 21 C -0.310 4.310 22 C -0.156 4.156 23 C -0.102 4.102 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.468 19.037 -3.483 19.409 hybrid contribution -0.320 -1.585 0.206 1.630 sum 1.149 17.452 -3.277 17.795 Atomic orbital electron populations 1.22678 0.83719 1.02288 0.98265 1.88488 1.17321 1.25611 1.94555 1.23416 0.97655 0.86126 0.98575 1.22227 0.89315 0.99807 0.95455 1.62386 1.58183 1.05150 0.99078 1.20056 0.97239 0.80159 0.96834 1.21027 1.24871 0.94283 1.12860 0.92494 1.24860 0.95370 0.97719 0.96211 1.69958 1.34895 1.11382 1.37553 0.86639 0.79649 0.79208 0.82679 1.20954 1.21539 1.20040 1.21124 0.96460 0.90105 0.96958 1.20083 0.94895 0.95481 0.95636 1.21050 1.00079 0.92106 0.98929 1.20642 0.94591 0.97236 0.99878 1.21549 0.99337 0.96312 1.03364 1.85325 1.26362 1.11351 1.66391 1.23626 0.98183 1.06723 1.02430 1.21101 1.00247 0.93131 1.01082 1.20966 0.94758 0.95845 0.98599 0.95339 0.95318 0.89953 0.94623 0.94038 0.88671 0.91385 0.94403 0.96526 0.93372 0.94293 0.90555 0.85920 0.85962 0.89824 0.87698 0.89703 0.86240 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.34 -7.18 7.57 -35.23 -0.27 -7.45 16 3 C 0.02 0.37 5.16 37.16 0.19 0.56 16 4 C 0.06 1.17 5.18 -3.82 -0.02 1.15 16 5 N -0.52 -11.06 4.74 -237.52 -1.13 -12.18 16 6 C 0.18 4.66 4.27 -4.97 -0.02 4.64 16 7 C -0.49 -13.80 8.22 -34.44 -0.28 -14.08 16 8 H 0.06 1.60 6.97 -52.49 -0.37 1.24 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.08 1.43 4.80 -4.98 -0.02 1.41 16 16 C -0.06 -0.89 4.89 -104.57 -0.51 -1.40 16 17 C -0.10 -1.40 8.01 -39.61 -0.32 -1.72 16 18 C -0.10 -1.30 9.79 -39.36 -0.39 -1.68 16 19 C -0.09 -1.20 6.11 -39.04 -0.24 -1.44 16 20 S -0.14 -1.46 22.56 -107.50 -2.43 -3.89 16 21 C -0.14 -1.07 9.15 101.05 0.92 -0.15 16 22 C -0.13 -1.69 9.36 -39.37 -0.37 -2.06 16 23 C -0.08 -1.16 9.69 -39.61 -0.38 -1.55 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.67 4.46 -51.93 -0.23 0.44 16 29 H 0.10 2.09 6.33 -51.93 -0.33 1.76 16 30 H 0.07 1.18 6.52 -51.93 -0.34 0.84 16 31 H 0.04 1.04 5.29 -51.93 -0.27 0.77 16 32 H 0.02 0.46 8.05 -51.93 -0.42 0.05 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.68 5.66 -51.93 -0.29 0.39 16 35 H 0.08 1.35 7.95 -51.93 -0.41 0.93 16 36 H 0.12 1.57 6.15 -52.49 -0.32 1.25 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.08 0.59 7.75 -51.92 -0.40 0.18 16 39 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 41 H 0.12 1.26 5.88 -52.48 -0.31 0.95 16 42 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -31.10 344.02 -9.54 -40.63 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.20 Total: -0.11 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.42 Total: -13.15 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.39 Total: -38.25 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.27 Total: -7.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.43 Total: -3.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.10 -9.54 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.316 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds