Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00352 * 2 1 4 4 C 1.53005 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46849 * 67.26295 * 4 3 2 6 6 C 1.46907 * 110.99723 * 290.53102 * 5 4 3 7 7 C 1.50698 * 109.47379 * 299.82068 * 6 5 4 8 8 H 1.08000 * 120.00078 * 354.87870 * 7 6 5 9 9 C 1.37873 * 119.99990 * 174.87213 * 7 6 5 10 10 N 1.31512 * 119.99868 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99946 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47579 * 90.00014 * 11 9 7 13 13 H 1.48507 * 109.47232 * 209.99978 * 11 9 7 14 14 H 1.48502 * 109.47216 * 329.99784 * 11 9 7 15 15 C 1.46893 * 111.00402 * 54.48509 * 5 4 3 16 16 C 1.50701 * 109.46894 * 66.04421 * 15 5 4 17 17 C 1.38306 * 119.92262 * 270.27804 * 16 15 5 18 18 C 1.38082 * 120.07990 * 180.23322 * 17 16 15 19 19 C 1.38978 * 119.91847 * 359.48955 * 18 17 16 20 20 S 1.76202 * 120.07597 * 180.27545 * 19 18 17 21 21 C 1.81400 * 102.99487 * 180.02562 * 20 19 18 22 22 C 1.38968 * 119.83828 * 0.25704 * 19 18 17 23 23 C 1.38078 * 119.92390 * 359.97438 * 22 19 18 24 24 H 1.09000 * 109.47500 * 300.00120 * 1 2 3 25 25 H 1.09003 * 109.47033 * 60.00099 * 1 2 3 26 26 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47104 * 59.99884 * 3 2 1 28 28 H 1.08998 * 109.47329 * 299.99854 * 3 2 1 29 29 H 1.09005 * 109.46871 * 307.26382 * 4 3 2 30 30 H 1.09001 * 109.46990 * 187.26316 * 4 3 2 31 31 H 1.08993 * 109.47351 * 59.82644 * 6 5 4 32 32 H 1.09002 * 109.46663 * 179.82718 * 6 5 4 33 33 H 0.97003 * 119.99790 * 179.97438 * 10 9 7 34 34 H 1.08999 * 109.47464 * 306.04638 * 15 5 4 35 35 H 1.08997 * 109.47402 * 186.04193 * 15 5 4 36 36 H 1.07995 * 119.95658 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.03675 * 179.76761 * 18 17 16 38 38 H 1.08998 * 109.47612 * 60.00276 * 21 20 19 39 39 H 1.09010 * 109.46730 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47526 * 299.99768 * 21 20 19 41 41 H 1.08008 * 120.03826 * 180.02562 * 22 19 18 42 42 H 1.08004 * 119.96026 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9818 0.6120 -1.2764 6 6 3.5910 -0.7999 -1.3855 7 6 4.2203 -1.5835 -0.2626 8 1 4.9131 -1.1008 0.4108 9 6 3.9116 -2.9167 -0.0948 10 7 3.0684 -3.5047 -0.9151 11 14 4.6911 -3.8879 1.2975 12 1 3.8348 -3.7934 2.5071 13 1 4.8236 -5.3112 0.8948 14 1 6.0348 -3.3313 1.5976 15 6 3.4665 1.3900 -2.4109 16 6 4.0839 2.7647 -2.3990 17 6 3.4686 3.7914 -1.7061 18 6 4.0289 5.0534 -1.6970 19 6 5.2182 5.2886 -2.3765 20 16 5.9406 6.8957 -2.3616 21 6 7.4357 6.6801 -3.3660 22 6 5.8364 4.2533 -3.0672 23 6 5.2678 2.9951 -3.0759 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8482 0.5357 0.8188 30 1 3.9781 2.1721 0.1306 31 1 2.5060 -0.8825 -1.3227 32 1 3.9311 -1.1981 -2.3415 33 1 2.8515 -4.4428 -0.7972 34 1 2.3831 1.4776 -2.3293 35 1 3.7210 0.8855 -3.3429 36 1 2.5465 3.6068 -1.1750 37 1 3.5458 5.8555 -1.1588 38 1 7.1565 6.3556 -4.3684 39 1 7.9724 7.6270 -3.4265 40 1 8.0771 5.9282 -2.9062 41 1 6.7610 4.4325 -3.5960 42 1 5.7475 2.1901 -3.6129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = -24.115255 kcal Electronic energy + Delta-G solvation = -21872.880342 eV Core-core repulsion = 18750.975485 eV Total energy + Delta-G solvation = -3121.904857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65440 -39.20402 -37.24245 -34.68290 -32.70473 -32.16647 -30.59436 -29.73712 -28.73421 -27.23799 -26.07544 -24.37096 -23.52304 -22.79606 -20.94522 -18.65637 -18.37837 -17.53458 -17.44090 -16.80977 -16.50473 -16.12823 -15.90456 -15.61357 -15.57282 -15.08755 -14.65661 -14.63613 -14.36891 -14.06508 -13.65372 -13.54538 -13.33672 -13.11282 -12.89605 -12.76853 -12.70055 -12.54224 -12.43251 -12.24445 -11.96305 -11.77677 -11.64758 -11.20128 -11.07393 -10.56323 -10.53353 -10.24954 -9.89360 -8.75499 -8.29510 -8.04859 -6.09628 0.23281 0.45493 0.62775 1.42675 1.43440 1.50915 1.53792 2.47534 2.70135 3.05730 3.29065 3.58461 3.82886 3.94913 4.02433 4.17789 4.25788 4.28454 4.31272 4.39813 4.42200 4.53624 4.54130 4.58931 4.63326 4.73381 4.78074 4.86207 4.88591 4.93774 5.10874 5.17108 5.30229 5.34998 5.46937 5.71987 5.74044 5.79556 5.96475 6.22072 6.42887 6.48537 6.78405 7.05532 7.55657 9.05928 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003715 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.375021 B = 7535.725792 C = 8262.494457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.024 3.976 4 C 0.065 3.935 5 N -0.534 5.534 6 C 0.198 3.802 7 C -0.500 4.500 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.089 3.911 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.105 4.105 19 C -0.097 4.097 20 S -0.146 6.146 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.092 4.092 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.022 0.978 32 H -0.017 1.017 33 H 0.258 0.742 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 20.517 -3.342 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C -0.053 4.053 4 C -0.064 4.064 5 N -0.257 5.257 6 C 0.072 3.928 7 C -0.539 4.539 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.572 5.572 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.039 4.039 16 C -0.079 4.079 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.209 4.209 20 S 0.096 5.904 21 C -0.305 4.305 22 C -0.156 4.156 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.040 0.960 32 H 0.001 0.999 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.159 0.841 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.126 21.292 -2.900 21.593 hybrid contribution -0.476 -2.125 -0.029 2.178 sum 1.650 19.167 -2.930 19.460 Atomic orbital electron populations 1.22782 0.81744 1.02290 1.00262 1.88393 1.19706 1.27700 1.94940 1.23414 0.96093 0.85340 1.00502 1.22158 0.91050 0.99844 0.93319 1.62225 1.58995 1.03372 1.01120 1.19652 0.95857 0.82930 0.94333 1.21294 1.24593 0.94827 1.13179 0.93081 1.25659 0.95922 0.98813 0.98621 1.70084 1.36229 1.11661 1.39240 0.85615 0.78937 0.77715 0.79668 1.20375 1.21067 1.19354 1.21032 0.96659 0.91096 0.95070 1.19860 0.95910 0.94354 0.97781 1.21122 1.00319 0.92093 0.98572 1.20881 0.94751 0.97287 0.99878 1.21837 0.99257 0.97412 1.02416 1.85391 1.28078 1.09803 1.67172 1.23763 0.96504 1.08167 1.02101 1.21309 1.00921 0.92381 1.01017 1.21057 0.94699 0.96725 0.98778 0.92800 0.93697 0.91076 0.91995 0.92478 0.91776 0.89088 0.96025 0.99860 0.93344 0.94124 0.91625 0.84985 0.84228 0.88941 0.85538 0.89278 0.84059 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -16.38 7.57 -148.98 -1.13 -17.51 16 3 C 0.02 0.83 5.16 71.98 0.37 1.20 16 4 C 0.06 2.49 5.18 86.31 0.45 2.93 16 5 N -0.53 -23.00 4.74 -905.37 -4.29 -27.29 16 6 C 0.20 10.59 4.27 85.56 0.37 10.95 16 7 C -0.50 -28.85 8.22 25.60 0.21 -28.64 16 8 H 0.05 2.94 6.97 -2.91 -0.02 2.92 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 11 Si 0.95 45.85 29.54 68.60 2.03 47.87 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.09 3.18 4.80 85.56 0.41 3.59 16 16 C -0.08 -2.28 4.89 -19.83 -0.10 -2.38 16 17 C -0.10 -2.62 8.01 22.25 0.18 -2.44 16 18 C -0.10 -2.48 9.79 22.41 0.22 -2.26 16 19 C -0.10 -2.27 6.11 22.62 0.14 -2.13 16 20 S -0.15 -2.78 22.56 -56.49 -1.27 -4.05 16 21 C -0.14 -1.65 9.15 113.37 1.04 -0.61 16 22 C -0.13 -3.14 9.36 22.41 0.21 -2.93 16 23 C -0.09 -2.57 9.69 22.25 0.22 -2.36 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.76 4.46 -2.39 -0.01 1.75 16 29 H 0.06 2.86 6.33 -2.38 -0.02 2.84 16 30 H 0.09 3.04 6.52 -2.39 -0.02 3.03 16 31 H 0.02 1.26 5.29 -2.39 -0.01 1.25 16 32 H -0.02 -0.98 8.05 -2.39 -0.02 -1.00 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.04 1.43 5.66 -2.39 -0.01 1.41 16 35 H 0.07 2.43 7.95 -2.39 -0.02 2.41 16 36 H 0.13 3.09 6.15 -2.91 -0.02 3.07 16 37 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.09 0.99 7.75 -2.39 -0.02 0.97 16 39 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 1.04 7.75 -2.39 -0.02 1.02 16 41 H 0.14 2.62 5.88 -2.91 -0.02 2.60 16 42 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -68.18 344.02 2.04 -66.14 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.01 Total: 13.65 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 5.42 Total: -22.11 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -4.01 Total: -83.99 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.13 Total: -17.51 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -1.27 Total: -4.05 kcal Total: -68.18 2.04 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.024 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds