Wall clock time and date at job start Tue Mar 31 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00054 * 2 1 4 4 C 1.52992 * 109.47605 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47443 * 65.00054 * 4 3 2 6 6 C 1.46497 * 119.99679 * 270.00590 * 5 4 3 7 7 C 1.50701 * 109.47101 * 264.39047 * 6 5 4 8 8 H 1.07998 * 120.00234 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00208 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00082 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99753 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46968 * 90.00284 * 11 9 7 13 13 H 1.48503 * 109.47199 * 210.00157 * 11 9 7 14 14 H 1.48500 * 109.47588 * 330.00316 * 11 9 7 15 15 C 1.34766 * 120.00096 * 89.99594 * 5 4 3 16 16 O 1.21279 * 120.00225 * 5.28713 * 15 5 4 17 17 C 1.50702 * 120.00313 * 185.28163 * 15 5 4 18 18 H 1.09006 * 109.46709 * 15.73198 * 17 15 5 19 19 F 1.39897 * 109.47523 * 255.73511 * 17 15 5 20 20 C 1.50697 * 109.47160 * 135.73172 * 17 15 5 21 21 C 1.38239 * 119.99785 * 245.00286 * 20 17 15 22 22 C 1.38243 * 119.99601 * 180.02562 * 21 20 17 23 23 C 1.38233 * 120.00339 * 359.95160 * 22 21 20 24 24 C 1.38244 * 119.99708 * 0.02562 * 23 22 21 25 25 C 1.38232 * 120.00100 * 0.07171 * 24 23 22 26 26 H 1.09002 * 109.47563 * 60.00476 * 1 2 3 27 27 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47486 * 299.99570 * 1 2 3 29 29 H 1.09008 * 109.46966 * 59.99942 * 3 2 1 30 30 H 1.09000 * 109.47122 * 300.00563 * 3 2 1 31 31 H 1.09008 * 109.46959 * 304.99985 * 4 3 2 32 32 H 1.09004 * 109.47481 * 185.00151 * 4 3 2 33 33 H 1.09005 * 109.47700 * 24.39181 * 6 5 4 34 34 H 1.09001 * 109.46977 * 144.39217 * 6 5 4 35 35 H 0.97000 * 120.00128 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.00224 * 359.97438 * 21 20 17 37 37 H 1.07999 * 119.99396 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00301 * 179.72697 * 23 22 21 39 39 H 1.07999 * 119.99873 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00101 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3427 7 6 5.5356 -1.2862 -1.0790 8 1 6.2742 -0.5279 -0.8652 9 6 5.9013 -2.6153 -1.1105 10 7 7.1495 -2.9594 -0.8798 11 14 4.6237 -3.9271 -1.4795 12 1 4.5671 -4.1647 -2.9443 13 1 4.9943 -5.1876 -0.7875 14 1 3.2939 -3.4718 -1.0001 15 6 4.2614 1.3338 -2.3217 16 8 4.2470 2.5423 -2.2205 17 6 4.5988 0.6925 -3.6431 18 1 4.2962 -0.3546 -3.6265 19 9 5.9778 0.7759 -3.8633 20 6 3.8691 1.4088 -4.7500 21 6 2.9018 0.7460 -5.4822 22 6 2.2327 1.4030 -6.4980 23 6 2.5303 2.7229 -6.7810 24 6 3.4973 3.3858 -6.0485 25 6 4.1677 2.7283 -5.0341 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8514 0.5683 0.8410 32 1 3.9784 2.1767 0.0889 33 1 3.4566 -1.3609 -0.6027 34 1 3.8156 -1.2214 -2.3406 35 1 7.4067 -3.8944 -0.9016 36 1 2.6693 -0.2852 -5.2611 37 1 1.4773 0.8850 -7.0702 38 1 2.0107 3.2348 -7.5774 39 1 3.7301 4.4169 -6.2699 40 1 4.9234 3.2460 -4.4621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769369206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:57 Heat of formation + Delta-G solvation = -93.004920 kcal Electronic energy + Delta-G solvation = -24533.491532 eV Core-core repulsion = 20842.386219 eV Total energy + Delta-G solvation = -3691.105313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.24870 -39.56358 -38.69112 -37.50951 -35.18054 -32.63580 -32.20849 -30.78821 -30.27145 -27.76244 -26.97444 -25.85791 -22.91864 -22.60090 -22.48434 -21.26584 -18.70932 -17.21476 -17.12260 -16.86783 -16.21171 -16.05490 -15.77846 -15.54655 -15.06268 -14.71087 -14.36081 -14.23899 -14.00068 -13.78540 -13.28248 -13.13947 -12.63756 -12.57384 -12.37746 -12.05912 -12.02023 -11.90195 -11.67617 -11.55303 -11.03868 -10.99393 -10.86457 -10.77201 -10.34764 -10.23569 -9.59965 -9.56490 -9.23348 -8.79132 -8.72690 -8.63193 -7.87913 -6.17071 -4.19170 1.34107 1.52125 3.00173 3.20178 3.28767 3.31316 3.51219 3.90949 3.97886 4.30516 4.64571 4.86824 4.95997 5.06133 5.13874 5.21632 5.23402 5.33070 5.36128 5.48997 5.49887 5.54622 5.55844 5.67873 5.69587 5.86686 5.90858 6.00359 6.17946 6.22410 6.43890 6.49587 6.58416 6.70233 6.74393 7.06322 7.20473 7.30649 7.45807 7.98671 8.38057 8.63790 8.90187 9.41071 10.95659 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.006425 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.053322 B = 4356.710086 C = 5347.403406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.573 5.573 6 C 0.207 3.793 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.888 5.888 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.259 1.259 15 C 0.505 3.495 16 O -0.551 6.551 17 C 0.126 3.874 18 H 0.114 0.886 19 F -0.178 7.178 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.068 4.068 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 7.607 -5.867 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.302 5.302 6 C 0.087 3.913 7 C -0.582 4.582 8 H 0.097 0.903 9 C -0.125 4.125 10 N -0.525 5.525 11 Si 0.692 3.308 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.184 1.184 15 C 0.290 3.710 16 O -0.430 6.430 17 C 0.087 3.913 18 H 0.132 0.868 19 F -0.159 7.159 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.148 4.148 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.086 4.086 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.010 7.879 -5.766 16.266 hybrid contribution -0.631 -0.731 -0.130 0.975 sum -13.642 7.148 -5.896 16.491 Atomic orbital electron populations 1.22694 0.81935 1.02417 0.99429 1.88007 1.18895 1.27683 1.95275 1.23049 0.95025 0.84860 1.00104 1.21443 0.91043 1.00246 0.87700 1.47862 1.63075 1.09157 1.10130 1.19978 0.98622 0.75151 0.97568 1.21395 0.92816 0.93938 1.50063 0.90267 1.24840 0.95124 0.98238 0.94297 1.69888 1.16576 1.17748 1.48327 0.87001 0.82759 0.81946 0.79138 1.19854 1.20804 1.18351 1.20526 0.77434 0.87103 0.85902 1.90600 1.53473 1.14095 1.84855 1.20327 0.77709 1.01918 0.91311 0.86807 1.92905 1.29938 1.97688 1.95322 1.20015 0.98751 0.95399 0.97632 1.21054 0.95406 0.99933 0.95202 1.21042 1.00446 0.95046 0.98247 1.21171 0.97739 0.94876 0.99444 1.21144 0.97127 1.00000 0.96438 1.21141 0.98513 0.93440 0.95494 0.94512 0.89890 0.94482 0.92729 0.93296 0.88959 0.88793 0.92913 0.95918 0.92366 0.85636 0.85950 0.86215 0.85977 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.15 9.63 -35.23 -0.34 -6.49 16 3 C 0.05 0.71 6.28 37.15 0.23 0.95 16 4 C 0.12 2.10 5.83 -4.04 -0.02 2.08 16 5 N -0.57 -11.89 2.43 -175.06 -0.43 -12.32 16 6 C 0.21 4.69 3.77 -5.19 -0.02 4.67 16 7 C -0.54 -14.68 9.89 -34.44 -0.34 -15.02 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 10 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 11 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 15 C 0.50 10.62 6.96 -10.99 -0.08 10.55 16 16 O -0.55 -12.04 14.73 5.56 0.08 -11.96 16 17 C 0.13 2.51 3.61 -29.04 -0.10 2.40 16 18 H 0.11 2.21 5.27 -51.93 -0.27 1.94 16 19 F -0.18 -3.96 16.92 2.25 0.04 -3.92 16 20 C -0.12 -2.01 5.00 -104.62 -0.52 -2.53 16 21 C -0.10 -1.42 9.67 -39.58 -0.38 -1.80 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.07 -1.11 8.56 -39.58 -0.34 -1.45 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.63 8.07 -51.92 -0.42 1.22 16 32 H 0.09 1.61 7.36 -51.93 -0.38 1.23 16 33 H 0.05 1.20 6.29 -51.93 -0.33 0.88 16 34 H 0.02 0.50 5.28 -51.93 -0.27 0.23 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.62 7.95 -52.49 -0.42 1.20 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 2.28 7.41 -52.49 -0.39 1.89 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -31.93 340.97 -6.61 -38.54 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.45 Total: 3.62 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.75 Total: -2.44 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.35 Total: -37.85 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.26 Total: -18.44 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.93 -6.61 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769369206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.464 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds