Wall clock time and date at job start Tue Mar 31 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00182 * 2 1 4 4 C 1.53000 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99859 * 4 3 2 6 6 C 1.46496 * 119.99880 * 270.00471 * 5 4 3 7 7 C 1.50703 * 109.47077 * 269.99336 * 6 5 4 8 8 H 1.08005 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00292 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00314 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47168 * 90.00127 * 11 9 7 13 13 H 1.48497 * 109.46932 * 210.00102 * 11 9 7 14 14 H 1.48501 * 109.47042 * 330.00023 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 5 4 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 5 4 18 18 H 1.08997 * 109.47120 * 345.00116 * 17 15 5 19 19 F 1.39904 * 109.46637 * 105.00012 * 17 15 5 20 20 C 1.50694 * 109.46820 * 224.99581 * 17 15 5 21 21 C 1.38234 * 120.00501 * 294.72897 * 20 17 15 22 22 C 1.38231 * 120.00298 * 179.81099 * 21 20 17 23 23 C 1.38236 * 120.00007 * 0.39755 * 22 21 20 24 24 C 1.38232 * 120.00047 * 359.85603 * 23 22 21 25 25 C 1.38237 * 119.99921 * 115.00417 * 20 17 15 26 26 H 1.08992 * 109.47218 * 60.00123 * 1 2 3 27 27 H 1.09006 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46739 * 300.00007 * 1 2 3 29 29 H 1.08999 * 109.46764 * 60.00193 * 3 2 1 30 30 H 1.09001 * 109.46848 * 300.00150 * 3 2 1 31 31 H 1.09001 * 109.46783 * 305.00011 * 4 3 2 32 32 H 1.08996 * 109.47306 * 185.00018 * 4 3 2 33 33 H 1.08997 * 109.47682 * 29.99532 * 6 5 4 34 34 H 1.09004 * 109.47271 * 149.99629 * 6 5 4 35 35 H 0.96999 * 120.00320 * 179.97438 * 10 9 7 36 36 H 1.08007 * 119.99848 * 359.97438 * 21 20 17 37 37 H 1.08001 * 120.00181 * 180.22835 * 22 21 20 38 38 H 1.08003 * 119.99971 * 179.83111 * 23 22 21 39 39 H 1.07997 * 120.00204 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00001 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2979 -0.9450 8 1 6.2196 -0.5460 -0.6538 9 6 5.8606 -2.6289 -0.9527 10 7 7.0785 -2.9830 -0.6051 11 14 4.6179 -3.9292 -1.4570 12 1 4.7036 -4.1539 -2.9224 13 1 4.9120 -5.1979 -0.7436 14 1 3.2502 -3.4694 -1.1058 15 6 4.2615 1.3337 -2.3218 16 8 4.6211 0.8199 -3.3599 17 6 4.1287 2.8320 -2.2290 18 1 3.5502 3.0912 -1.3423 19 9 5.4005 3.4082 -2.1410 20 6 3.4260 3.3510 -3.4569 21 6 4.0266 3.2379 -4.6968 22 6 3.3803 3.7104 -5.8236 23 6 2.1368 4.3035 -5.7096 24 6 1.5384 4.4213 -4.4691 25 6 2.1832 3.9453 -3.3427 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9786 2.1764 0.0889 33 1 3.3853 -1.3630 -0.6734 34 1 3.9120 -1.2115 -2.3669 35 1 7.3314 -3.9194 -0.6102 36 1 4.9998 2.7779 -4.7855 37 1 3.8479 3.6187 -6.7928 38 1 1.6330 4.6751 -6.5897 39 1 0.5672 4.8851 -4.3799 40 1 1.7156 4.0373 -2.3735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769369217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:00 Heat of formation + Delta-G solvation = -90.522853 kcal Electronic energy + Delta-G solvation = -24415.651656 eV Core-core repulsion = 20724.653973 eV Total energy + Delta-G solvation = -3690.997683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.71320 -39.62708 -38.72519 -37.64032 -35.11816 -32.79188 -32.18862 -30.92103 -29.97720 -28.40648 -26.56234 -26.09077 -22.91614 -22.74199 -22.63129 -21.27152 -18.82656 -17.46538 -17.12668 -16.95054 -16.56118 -16.08303 -15.82040 -15.56547 -15.05945 -14.94187 -14.44774 -14.30035 -14.07981 -13.81005 -13.41802 -13.29569 -12.76831 -12.69323 -12.45766 -12.15929 -12.04212 -11.85352 -11.81205 -11.56510 -11.13242 -11.05181 -10.92394 -10.82441 -10.41485 -10.10277 -9.62281 -9.50475 -9.25459 -8.91226 -8.76938 -8.53367 -7.80910 -6.03731 -4.02248 1.19635 1.39364 3.01813 3.33482 3.38984 3.43925 3.48644 3.78892 3.85092 4.39592 4.45373 4.55643 4.59014 4.90581 4.95632 5.09500 5.10073 5.23929 5.28491 5.30914 5.34526 5.38783 5.43422 5.44932 5.51440 5.63075 5.69592 5.85062 6.04091 6.08864 6.35018 6.48624 6.54337 6.81240 6.93378 7.00361 7.22538 7.25952 7.66180 8.10057 8.48433 8.74421 8.99606 9.56459 11.09610 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.005439 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.306861 B = 5146.883997 C = 5959.909987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.041 3.959 4 C 0.103 3.897 5 N -0.574 5.574 6 C 0.219 3.781 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.490 3.510 16 O -0.513 6.513 17 C 0.118 3.882 18 H 0.102 0.898 19 F -0.185 7.185 20 C -0.119 4.119 21 C -0.065 4.065 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.100 4.100 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 15.266 -2.033 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.037 4.037 4 C -0.021 4.021 5 N -0.304 5.304 6 C 0.099 3.901 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.128 4.128 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.273 3.727 16 O -0.388 6.388 17 C 0.079 3.921 18 H 0.120 0.880 19 F -0.165 7.165 20 C -0.120 4.120 21 C -0.083 4.083 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.148 4.148 25 C -0.118 4.118 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.495 14.631 -2.550 20.753 hybrid contribution -0.657 -0.494 -0.111 0.830 sum -15.152 14.137 -2.661 20.893 Atomic orbital electron populations 1.22723 0.81767 1.02680 0.99389 1.88065 1.18985 1.26964 1.95200 1.23173 0.94978 0.85605 0.99923 1.21693 0.91341 0.99591 0.89497 1.47875 1.63635 1.09159 1.09775 1.19759 0.97973 0.74242 0.98101 1.21348 0.96044 0.93660 1.45779 0.90751 1.24811 0.95148 0.98289 0.94576 1.69896 1.18156 1.17257 1.48367 0.86887 0.82492 0.81407 0.79251 1.20044 1.21119 1.18623 1.20399 0.79574 0.87898 0.84817 1.90685 1.45196 1.73956 1.29011 1.20513 0.81436 0.91983 0.98189 0.88041 1.92900 1.41144 1.85119 1.97366 1.19829 0.96155 1.01496 0.94501 1.21187 1.00525 0.95243 0.91392 1.21189 0.95500 0.98993 0.98639 1.21208 0.95450 0.98781 0.97498 1.21028 1.00015 1.01180 0.92560 1.20937 0.94096 0.97782 0.99013 0.94433 0.89771 0.94383 0.92405 0.93619 0.87977 0.89543 0.93585 0.94831 0.92615 0.84766 0.85726 0.86052 0.85905 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.80 9.53 -35.23 -0.34 -6.14 16 3 C 0.04 0.52 6.07 37.16 0.23 0.75 16 4 C 0.10 1.60 5.40 -4.04 -0.02 1.57 16 5 N -0.57 -11.94 2.42 -175.06 -0.42 -12.37 16 6 C 0.22 5.50 4.05 -5.19 -0.02 5.48 16 7 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 8 H 0.07 2.38 8.06 -52.48 -0.42 1.96 16 9 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 10 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 11 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 12 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 15 C 0.49 10.22 7.01 -10.98 -0.08 10.14 16 16 O -0.51 -12.72 14.79 5.56 0.08 -12.64 16 17 C 0.12 1.90 3.41 -29.03 -0.10 1.80 16 18 H 0.10 1.25 5.13 -51.93 -0.27 0.98 16 19 F -0.18 -3.26 16.91 2.25 0.04 -3.22 16 20 C -0.12 -1.77 5.00 -104.63 -0.52 -2.30 16 21 C -0.07 -1.01 8.56 -39.59 -0.34 -1.35 16 22 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 25 C -0.10 -1.18 9.67 -39.58 -0.38 -1.57 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 7.85 -51.93 -0.41 0.13 16 31 H 0.10 1.68 8.07 -51.93 -0.42 1.26 16 32 H 0.09 1.08 6.23 -51.93 -0.32 0.75 16 33 H 0.05 1.13 6.18 -51.93 -0.32 0.81 16 34 H 0.03 0.91 6.84 -51.93 -0.36 0.55 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.13 2.30 7.43 -52.48 -0.39 1.91 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -36.00 340.34 -6.61 -42.62 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.45 Total: -0.32 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.76 Total: -3.10 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.35 Total: -39.74 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.25 Total: -18.78 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.00 -6.61 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769369217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.907 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds