Wall clock time and date at job start Tue Mar 31 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00182 * 2 1 4 4 C 1.53000 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99859 * 4 3 2 6 6 C 1.46496 * 119.99880 * 270.00471 * 5 4 3 7 7 C 1.50703 * 109.47077 * 269.99336 * 6 5 4 8 8 H 1.08005 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00292 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00314 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47168 * 90.00127 * 11 9 7 13 13 H 1.48497 * 109.46932 * 210.00102 * 11 9 7 14 14 H 1.48501 * 109.47042 * 330.00023 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 5 4 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 5 4 18 18 H 1.08997 * 109.47120 * 345.00116 * 17 15 5 19 19 F 1.39904 * 109.46637 * 105.00012 * 17 15 5 20 20 C 1.50694 * 109.46820 * 224.99581 * 17 15 5 21 21 C 1.38234 * 120.00501 * 294.72897 * 20 17 15 22 22 C 1.38231 * 120.00298 * 179.81099 * 21 20 17 23 23 C 1.38236 * 120.00007 * 0.39755 * 22 21 20 24 24 C 1.38232 * 120.00047 * 359.85603 * 23 22 21 25 25 C 1.38237 * 119.99921 * 115.00417 * 20 17 15 26 26 H 1.08992 * 109.47218 * 60.00123 * 1 2 3 27 27 H 1.09006 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46739 * 300.00007 * 1 2 3 29 29 H 1.08999 * 109.46764 * 60.00193 * 3 2 1 30 30 H 1.09001 * 109.46848 * 300.00150 * 3 2 1 31 31 H 1.09001 * 109.46783 * 305.00011 * 4 3 2 32 32 H 1.08996 * 109.47306 * 185.00018 * 4 3 2 33 33 H 1.08997 * 109.47682 * 29.99532 * 6 5 4 34 34 H 1.09004 * 109.47271 * 149.99629 * 6 5 4 35 35 H 0.96999 * 120.00320 * 179.97438 * 10 9 7 36 36 H 1.08007 * 119.99848 * 359.97438 * 21 20 17 37 37 H 1.08001 * 120.00181 * 180.22835 * 22 21 20 38 38 H 1.08003 * 119.99971 * 179.83111 * 23 22 21 39 39 H 1.07997 * 120.00204 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00001 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2979 -0.9450 8 1 6.2196 -0.5460 -0.6538 9 6 5.8606 -2.6289 -0.9527 10 7 7.0785 -2.9830 -0.6051 11 14 4.6179 -3.9292 -1.4570 12 1 4.7036 -4.1539 -2.9224 13 1 4.9120 -5.1979 -0.7436 14 1 3.2502 -3.4694 -1.1058 15 6 4.2615 1.3337 -2.3218 16 8 4.6211 0.8199 -3.3599 17 6 4.1287 2.8320 -2.2290 18 1 3.5502 3.0912 -1.3423 19 9 5.4005 3.4082 -2.1410 20 6 3.4260 3.3510 -3.4569 21 6 4.0266 3.2379 -4.6968 22 6 3.3803 3.7104 -5.8236 23 6 2.1368 4.3035 -5.7096 24 6 1.5384 4.4213 -4.4691 25 6 2.1832 3.9453 -3.3427 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9786 2.1764 0.0889 33 1 3.3853 -1.3630 -0.6734 34 1 3.9120 -1.2115 -2.3669 35 1 7.3314 -3.9194 -0.6102 36 1 4.9998 2.7779 -4.7855 37 1 3.8479 3.6187 -6.7928 38 1 1.6330 4.6751 -6.5897 39 1 0.5672 4.8851 -4.3799 40 1 1.7156 4.0373 -2.3735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769369217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:59 Heat of formation + Delta-G solvation = -115.049998 kcal Electronic energy + Delta-G solvation = -24416.715233 eV Core-core repulsion = 20724.653973 eV Total energy + Delta-G solvation = -3692.061260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.06882 -41.02942 -39.81892 -38.77018 -36.72682 -34.85732 -33.44021 -31.83389 -31.50285 -29.90759 -27.99180 -27.09457 -24.54773 -24.05550 -23.58585 -22.52413 -20.32778 -19.16457 -18.79525 -18.17995 -17.98405 -17.16084 -16.95589 -16.69970 -16.56342 -16.28300 -15.77963 -15.53733 -15.36532 -15.21220 -14.88719 -14.53269 -14.32518 -13.95204 -13.74574 -13.55259 -13.53480 -13.18276 -13.03054 -12.93354 -12.70113 -12.50220 -12.09831 -12.05115 -11.96289 -11.84192 -11.76120 -10.84854 -10.77259 -10.53536 -9.85310 -9.83707 -9.53743 -8.35812 -6.40621 0.23694 0.46995 1.30494 1.33597 1.43054 1.44438 2.00852 2.29575 2.79892 2.91187 2.99326 3.24183 3.27609 3.46460 3.95690 4.08886 4.12845 4.18457 4.21058 4.26089 4.37085 4.48822 4.57051 4.57309 4.63922 4.68184 4.85645 4.88415 4.91789 4.94968 4.96268 5.11835 5.42230 5.47063 5.50319 5.56516 5.57667 6.04137 6.19281 6.30291 6.52530 6.60361 7.08237 7.25263 8.81255 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.005439 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.306861 B = 5146.883997 C = 5959.909987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.045 3.955 4 C 0.091 3.909 5 N -0.580 5.580 6 C 0.235 3.765 7 C -0.538 4.538 8 H 0.028 0.972 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.240 1.240 15 C 0.478 3.522 16 O -0.568 6.568 17 C 0.129 3.871 18 H 0.148 0.852 19 F -0.199 7.199 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.137 4.137 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.096 4.096 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.011 0.989 35 H 0.269 0.731 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.248 17.084 -1.622 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.032 4.032 4 C -0.031 4.031 5 N -0.310 5.310 6 C 0.113 3.887 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.184 4.184 10 N -0.584 5.584 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.196 1.196 14 H -0.163 1.163 15 C 0.263 3.737 16 O -0.447 6.447 17 C 0.090 3.910 18 H 0.165 0.835 19 F -0.179 7.179 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.155 4.155 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.114 4.114 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.807 16.495 -2.096 25.103 hybrid contribution 0.723 -0.979 -0.248 1.242 sum -18.084 15.516 -2.344 23.943 Atomic orbital electron populations 1.22885 0.79697 1.03252 1.01068 1.87992 1.21388 1.28707 1.95602 1.23209 0.92078 0.85266 1.02655 1.22100 0.94306 1.00359 0.86335 1.47954 1.63547 1.07673 1.11844 1.19284 0.95283 0.77567 0.96541 1.21579 0.97433 0.93055 1.45629 0.95320 1.25787 0.97328 1.00892 0.94371 1.70042 1.20459 1.18156 1.49752 0.85764 0.80592 0.78394 0.78564 1.20255 1.19623 1.16307 1.21381 0.78172 0.90235 0.83879 1.90646 1.47359 1.75560 1.31102 1.20609 0.81323 0.87917 1.01161 0.83462 1.92869 1.42625 1.84888 1.97567 1.19883 0.97847 1.03511 0.93317 1.21105 0.99967 0.97341 0.93432 1.21389 0.96641 0.99270 0.98192 1.21642 0.94290 0.97169 0.99296 1.21546 1.01156 0.99731 0.91686 1.21336 0.92423 0.96259 1.01359 0.93426 0.89957 0.91893 0.88121 0.92061 0.89574 0.86386 0.92526 0.97048 0.92216 0.88576 0.84704 0.82756 0.81940 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.42 -11.87 9.53 -148.98 -1.42 -13.29 16 3 C 0.05 0.98 6.07 71.98 0.44 1.42 16 4 C 0.09 2.69 5.40 86.38 0.47 3.15 16 5 N -0.58 -24.45 2.42 -826.15 -2.00 -26.45 16 6 C 0.24 12.10 4.05 85.63 0.35 12.44 16 7 C -0.54 -33.04 9.94 25.60 0.25 -32.78 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 9 C 0.01 0.88 5.47 84.65 0.46 1.34 16 10 N -0.94 -61.40 13.96 21.44 0.30 -61.10 16 11 Si 0.94 46.43 27.47 68.60 1.88 48.32 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.24 -10.86 6.54 99.48 0.65 -10.21 16 15 C 0.48 20.49 7.01 87.66 0.61 21.10 16 16 O -0.57 -29.96 14.79 -3.01 -0.04 -30.00 16 17 C 0.13 4.05 3.41 29.10 0.10 4.15 16 18 H 0.15 3.14 5.13 -2.39 -0.01 3.12 16 19 F -0.20 -7.18 16.91 44.97 0.76 -6.42 16 20 C -0.14 -4.18 5.00 -19.87 -0.10 -4.28 16 21 C -0.10 -3.22 8.56 22.27 0.19 -3.03 16 22 C -0.14 -3.39 10.05 22.27 0.22 -3.17 16 23 C -0.11 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.10 -1.89 9.67 22.27 0.22 -1.68 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.09 2.81 8.07 -2.39 -0.02 2.79 16 32 H 0.12 2.65 6.23 -2.39 -0.01 2.63 16 33 H 0.06 2.79 6.18 -2.39 -0.01 2.77 16 34 H 0.01 0.64 6.84 -2.38 -0.02 0.62 16 35 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 36 H 0.10 3.70 7.43 -2.91 -0.02 3.68 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.16 1.89 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -86.01 340.34 5.37 -80.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.98 Total: 11.37 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.91 Total: -3.08 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.70 Total: -87.55 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.46 Total: -43.29 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.76 Total: -6.42 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.32 kcal Total: -86.01 5.37 -80.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769369217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.409 kcal (2) G-P(sol) polarization free energy of solvation -86.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds