Wall clock time and date at job start Tue Mar 31 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00451 * 2 1 4 4 C 1.53002 * 109.47164 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47090 * 65.00061 * 4 3 2 6 6 C 1.37093 * 120.00140 * 270.00108 * 5 4 3 7 7 H 1.07996 * 120.00285 * 137.78168 * 6 5 4 8 8 C 1.38949 * 119.99700 * 317.77681 * 6 5 4 9 9 N 1.31412 * 120.00227 * 352.29376 * 8 6 5 10 10 Si 1.86804 * 120.00084 * 172.28766 * 8 6 5 11 11 H 1.48500 * 109.46797 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46820 * 120.00050 * 10 8 6 13 13 H 1.48495 * 109.47390 * 240.00458 * 10 8 6 14 14 C 1.34776 * 119.99927 * 89.99584 * 5 4 3 15 15 O 1.21299 * 120.00229 * 4.35332 * 14 5 4 16 16 C 1.50702 * 120.00146 * 184.34917 * 14 5 4 17 17 H 1.08996 * 109.47020 * 15.07028 * 16 14 5 18 18 F 1.39902 * 109.47288 * 255.06845 * 16 14 5 19 19 C 1.52999 * 109.47328 * 135.06555 * 16 14 5 20 20 C 1.50696 * 109.47210 * 185.00196 * 19 16 14 21 21 C 1.38237 * 119.99905 * 269.72235 * 20 19 16 22 22 C 1.38235 * 119.99847 * 179.76624 * 21 20 19 23 23 C 1.38234 * 119.99811 * 0.51333 * 22 21 20 24 24 C 1.38239 * 120.00268 * 359.74224 * 23 22 21 25 25 C 1.38234 * 119.99892 * 90.00194 * 20 19 16 26 26 H 1.08999 * 109.46730 * 59.99951 * 1 2 3 27 27 H 1.08995 * 109.47355 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46958 * 300.00393 * 1 2 3 29 29 H 1.09000 * 109.46859 * 59.99591 * 3 2 1 30 30 H 1.09000 * 109.46680 * 299.99936 * 3 2 1 31 31 H 1.08996 * 109.46991 * 305.00025 * 4 3 2 32 32 H 1.09001 * 109.46756 * 185.00185 * 4 3 2 33 33 H 0.97004 * 120.00235 * 185.00486 * 9 8 6 34 34 H 1.09000 * 109.46913 * 64.99984 * 19 16 14 35 35 H 1.08997 * 109.47142 * 305.00406 * 19 16 14 36 36 H 1.07997 * 119.99726 * 0.02562 * 21 20 19 37 37 H 1.07998 * 119.99813 * 180.23532 * 22 21 20 38 38 H 1.08000 * 120.00079 * 179.72677 * 23 22 21 39 39 H 1.07995 * 120.00001 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00222 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0979 -0.7992 -1.3346 7 1 3.7535 -1.3188 -2.2165 8 6 4.6638 -1.5121 -0.2847 9 7 5.2194 -0.8724 0.7198 10 14 4.6348 -3.3798 -0.3011 11 1 3.9566 -3.8534 -1.5344 12 1 6.0267 -3.8967 -0.2725 13 1 3.8986 -3.8739 0.8901 14 6 4.2634 1.3328 -2.3200 15 8 4.2326 2.5415 -2.2235 16 6 4.6222 0.6908 -3.6354 17 1 4.3436 -0.3627 -3.6135 18 9 6.0002 0.8045 -3.8492 19 6 3.8707 1.3936 -4.7677 20 6 4.1332 0.6755 -6.0663 21 6 5.2007 1.0512 -6.8603 22 6 5.4443 0.3893 -8.0492 23 6 4.6142 -0.6412 -8.4492 24 6 3.5436 -1.0133 -7.6578 25 6 3.3032 -0.3549 -6.4663 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8508 0.5684 0.8427 32 1 3.9786 2.1764 0.0902 33 1 5.6781 -1.3680 1.4162 34 1 4.2147 2.4249 -4.8468 35 1 2.8016 1.3824 -4.5560 36 1 5.8467 1.8589 -6.5497 37 1 6.2805 0.6802 -8.6677 38 1 4.8019 -1.1554 -9.3802 39 1 2.8949 -1.8181 -7.9705 40 1 2.4663 -0.6451 -5.8484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837236641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:14 Heat of formation + Delta-G solvation = -101.021815 kcal Electronic energy + Delta-G solvation = -24272.838859 eV Core-core repulsion = 20581.385907 eV Total energy + Delta-G solvation = -3691.452952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.93546 -39.10505 -38.56904 -36.96127 -34.80832 -33.30009 -31.60672 -30.74317 -29.84203 -28.40724 -25.88435 -24.91872 -24.09160 -22.41405 -21.75984 -20.64762 -19.24495 -17.39568 -16.81110 -16.43661 -15.74752 -15.46884 -15.27790 -15.00649 -14.74531 -14.59941 -14.47974 -14.25818 -13.87347 -13.40706 -13.26212 -12.88856 -12.70081 -12.43405 -12.00040 -11.97076 -11.65580 -11.45018 -11.23918 -11.07254 -11.01957 -10.95708 -10.82260 -10.67308 -10.40949 -10.26267 -10.00577 -9.18026 -9.00283 -8.77639 -8.62335 -8.34770 -7.50986 -6.31543 -4.13391 1.48329 1.55094 3.14653 3.24395 3.27384 3.64611 3.89623 4.11835 4.44778 4.56539 4.96826 4.99275 5.03499 5.12679 5.24989 5.32573 5.50825 5.64014 5.65479 5.68604 5.69299 5.77745 5.83387 5.95802 6.02869 6.10711 6.17083 6.22510 6.30062 6.37231 6.46878 6.59833 6.62824 6.69475 6.86128 7.15101 7.29044 7.49736 7.79307 7.99057 8.31537 9.05138 9.36270 9.78858 10.69552 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.005146 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.949112 B = 5439.623624 C = 5885.681700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.103 3.897 5 N -0.416 5.416 6 C -0.329 4.329 7 H 0.088 0.912 8 C 0.053 3.947 9 N -0.870 5.870 10 Si 0.922 3.078 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.448 3.552 15 O -0.595 6.595 16 C 0.099 3.901 17 H 0.104 0.896 18 F -0.199 7.199 19 C -0.097 4.097 20 C -0.076 4.076 21 C -0.105 4.105 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.115 4.115 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.270 0.730 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -0.543 -9.716 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.021 4.021 5 N -0.133 5.133 6 C -0.457 4.457 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.507 5.507 10 Si 0.748 3.252 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.235 3.765 15 O -0.481 6.481 16 C 0.060 3.940 17 H 0.122 0.878 18 F -0.180 7.180 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.197 -0.183 -9.409 10.751 hybrid contribution -0.174 -0.781 0.119 0.809 sum -5.372 -0.964 -9.291 10.775 Atomic orbital electron populations 1.22648 0.83559 1.01733 0.98774 1.88168 1.17210 1.27585 1.94997 1.23016 0.96514 0.84347 0.98428 1.21729 0.89151 0.99478 0.91708 1.43354 1.54739 1.06369 1.08877 1.19352 1.40584 0.80695 1.05033 0.89449 1.25369 0.94313 1.00237 0.95333 1.69622 1.33263 1.36182 1.11633 0.85951 0.77905 0.82684 0.78618 1.19195 1.20726 1.20471 1.20692 0.81667 0.87131 0.87018 1.90537 1.57780 1.14367 1.85380 1.21421 0.76841 1.02535 0.93179 0.87797 1.92788 1.31940 1.97642 1.95612 1.21051 1.01618 1.00211 0.90620 1.19877 0.95475 0.96396 0.95832 1.21120 0.96912 1.00090 0.94217 1.21109 0.99474 0.96597 0.96807 1.21092 0.95835 0.97917 0.99842 1.21091 0.98004 0.99861 0.95017 1.21114 0.99709 0.95805 0.96633 0.95083 0.90417 0.95183 0.94174 0.94565 0.85421 0.91056 0.91893 0.89197 0.89488 0.85896 0.86300 0.86493 0.86278 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.56 10.18 -35.23 -0.36 -7.91 16 3 C 0.05 1.12 6.28 37.16 0.23 1.35 16 4 C 0.10 2.45 5.45 -4.04 -0.02 2.43 16 5 N -0.42 -10.48 2.49 -114.81 -0.29 -10.76 16 6 C -0.33 -8.34 8.00 -14.94 -0.12 -8.46 16 7 H 0.09 2.12 6.40 -52.49 -0.34 1.79 16 8 C 0.05 1.34 5.23 -17.47 -0.09 1.25 16 9 N -0.87 -23.11 10.99 55.50 0.61 -22.50 16 10 Si 0.92 19.98 29.56 -169.99 -5.03 14.96 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.45 11.00 6.97 -10.98 -0.08 10.92 16 15 O -0.59 -15.62 16.16 5.54 0.09 -15.54 16 16 C 0.10 2.09 3.36 -27.88 -0.09 2.00 16 17 H 0.10 2.16 5.86 -51.93 -0.30 1.86 16 18 F -0.20 -4.48 16.77 2.25 0.04 -4.44 16 19 C -0.10 -1.69 4.82 -27.89 -0.13 -1.82 16 20 C -0.08 -1.18 5.00 -104.63 -0.52 -1.70 16 21 C -0.11 -1.54 9.56 -39.58 -0.38 -1.92 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 24 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.11 -1.61 9.70 -39.58 -0.38 -2.00 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 3.29 5.33 -51.93 -0.28 3.02 16 32 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 33 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 34 H 0.09 1.60 7.99 -51.93 -0.41 1.18 16 35 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.21 343.33 -6.93 -37.14 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.50 Total: 6.02 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.67 Total: -2.14 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.32 Total: -33.26 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.27 Total: -23.45 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.04 Total: -4.44 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.21 -6.93 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.886 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds