Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99700 * 2 1 4 4 C 1.53003 * 109.46881 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46967 * 65.00254 * 4 3 2 6 6 C 1.37098 * 120.00267 * 89.99754 * 5 4 3 7 7 H 1.07999 * 120.00061 * 219.71074 * 6 5 4 8 8 C 1.38949 * 119.99967 * 39.71032 * 6 5 4 9 9 N 1.31421 * 119.99782 * 18.11644 * 8 6 5 10 10 Si 1.86799 * 120.00015 * 198.11666 * 8 6 5 11 11 H 1.48505 * 109.46930 * 90.00346 * 10 8 6 12 12 H 1.48504 * 109.46777 * 209.99644 * 10 8 6 13 13 H 1.48493 * 109.47175 * 330.00052 * 10 8 6 14 14 C 1.34778 * 119.99849 * 269.72064 * 5 4 3 15 15 O 1.21295 * 120.00325 * 4.98362 * 14 5 4 16 16 C 1.50706 * 120.00135 * 184.97716 * 14 5 4 17 17 H 1.09000 * 109.46748 * 344.39215 * 16 14 5 18 18 F 1.39898 * 109.46981 * 104.39429 * 16 14 5 19 19 C 1.53004 * 109.47131 * 224.39525 * 16 14 5 20 20 C 1.50701 * 109.47091 * 175.00138 * 19 16 14 21 21 C 1.38234 * 119.99546 * 269.72920 * 20 19 16 22 22 C 1.38244 * 119.99371 * 179.76606 * 21 20 19 23 23 C 1.38232 * 120.00146 * 0.50449 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.74244 * 23 22 21 25 25 C 1.38234 * 120.00323 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47200 * 59.99425 * 1 2 3 27 27 H 1.08998 * 109.46667 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47183 * 299.99973 * 1 2 3 29 29 H 1.09000 * 109.47227 * 60.00167 * 3 2 1 30 30 H 1.09003 * 109.47157 * 300.00039 * 3 2 1 31 31 H 1.09001 * 109.47233 * 304.99721 * 4 3 2 32 32 H 1.09004 * 109.46932 * 185.00187 * 4 3 2 33 33 H 0.96998 * 119.99400 * 174.99160 * 9 8 6 34 34 H 1.09003 * 109.46830 * 295.00005 * 19 16 14 35 35 H 1.08998 * 109.47240 * 55.00118 * 19 16 14 36 36 H 1.08002 * 120.00511 * 359.97438 * 21 20 19 37 37 H 1.07999 * 119.99240 * 180.22857 * 22 21 20 38 38 H 1.08000 * 120.00014 * 179.72616 * 23 22 21 39 39 H 1.08004 * 120.00197 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.00462 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.2663 1.3471 -2.3403 7 1 3.9740 1.0271 -3.3295 8 6 4.9370 2.5520 -2.1698 9 7 5.6005 2.7833 -1.0592 10 14 4.8956 3.8431 -3.5191 11 1 3.7348 4.7446 -3.3061 12 1 6.1508 4.6359 -3.4843 13 1 4.7681 3.1754 -4.8393 14 6 4.1002 -0.7750 -1.3339 15 8 3.7622 -1.4732 -0.4014 16 6 4.6593 -1.4055 -2.5833 17 1 4.6454 -0.6780 -3.3949 18 9 5.9755 -1.8176 -2.3488 19 6 3.8068 -2.6161 -2.9691 20 6 4.2904 -3.1728 -4.2833 21 6 3.7503 -2.7123 -5.4695 22 6 4.1974 -3.2195 -6.6754 23 6 5.1771 -4.1945 -6.6944 24 6 5.7136 -4.6585 -5.5080 25 6 5.2700 -4.1480 -4.3024 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1766 0.0890 33 1 6.1281 3.5922 -0.9690 34 1 3.8918 -3.3810 -2.1972 35 1 2.7648 -2.3110 -3.0651 36 1 2.9814 -1.9540 -5.4545 37 1 3.7779 -2.8571 -7.6023 38 1 5.5232 -4.5939 -7.6363 39 1 6.4787 -5.4206 -5.5228 40 1 5.6888 -4.5108 -3.3754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837236644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = -102.086034 kcal Electronic energy + Delta-G solvation = -24315.899166 eV Core-core repulsion = 20624.400067 eV Total energy + Delta-G solvation = -3691.499100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.88038 -39.05679 -38.48189 -36.89641 -34.82220 -33.22935 -31.67047 -30.70787 -29.79605 -28.34897 -25.83105 -25.01283 -24.07410 -22.37721 -21.70101 -20.61142 -19.20832 -17.34702 -16.77067 -16.36449 -15.68316 -15.53228 -15.26529 -14.99392 -14.67354 -14.59365 -14.47594 -14.28482 -13.85831 -13.27941 -13.22469 -12.86508 -12.64093 -12.40029 -11.96619 -11.93075 -11.61160 -11.46634 -11.33279 -11.13462 -11.01639 -10.83733 -10.73174 -10.66307 -10.44750 -10.27283 -10.08482 -9.21089 -9.01384 -8.74185 -8.57160 -8.23233 -7.52184 -6.45911 -4.19546 1.52284 1.58496 3.05400 3.15696 3.17668 3.77994 3.92668 4.04560 4.49156 4.57477 4.85940 5.01872 5.05402 5.16129 5.29124 5.39195 5.57526 5.64521 5.69326 5.71079 5.76673 5.82475 5.90048 5.98508 6.06960 6.13002 6.20600 6.21131 6.33683 6.45422 6.54353 6.63546 6.66030 6.80613 6.91538 7.14066 7.18870 7.35864 7.85102 7.89246 8.27691 8.99443 9.39999 9.87150 10.56621 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.005640 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.631489 B = 4962.949050 C = 6074.221734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.428 5.428 6 C -0.349 4.349 7 H 0.090 0.910 8 C 0.047 3.953 9 N -0.860 5.860 10 Si 0.917 3.083 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.457 3.543 15 O -0.570 6.570 16 C 0.097 3.903 17 H 0.104 0.896 18 F -0.201 7.201 19 C -0.096 4.096 20 C -0.075 4.075 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.106 4.106 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 -5.691 -6.969 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.029 4.029 4 C -0.006 4.006 5 N -0.148 5.148 6 C -0.476 4.476 7 H 0.107 0.893 8 C -0.159 4.159 9 N -0.496 5.496 10 Si 0.743 3.257 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.243 3.757 15 O -0.453 6.453 16 C 0.058 3.942 17 H 0.121 0.879 18 F -0.181 7.181 19 C -0.134 4.134 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.650 -6.002 -6.360 9.904 hybrid contribution -0.049 1.123 -0.721 1.336 sum -4.698 -4.879 -7.081 9.799 Atomic orbital electron populations 1.22628 0.83486 1.01640 0.98822 1.88185 1.17374 1.27846 1.95063 1.23110 0.96432 0.84452 0.98888 1.21516 0.89473 1.01889 0.87716 1.43295 1.56525 1.03456 1.11476 1.19411 1.38298 1.02107 0.87827 0.89288 1.25454 0.93989 0.99148 0.97350 1.69802 1.26236 1.27056 1.26536 0.86096 0.77911 0.80624 0.81090 1.20131 1.20737 1.19200 1.20563 0.82416 0.83945 0.88751 1.90571 1.52844 1.62111 1.39774 1.21451 0.77944 0.95728 0.99091 0.87873 1.92779 1.37489 1.91719 1.96157 1.21047 0.99991 0.98048 0.94313 1.19917 0.96426 0.96218 0.94915 1.21116 1.00326 0.99873 0.91980 1.21087 0.97753 0.97468 0.97694 1.21080 0.97742 0.98071 0.97883 1.21106 1.00035 1.00293 0.92572 1.21121 0.96470 0.96587 0.98199 0.94996 0.90565 0.95165 0.94284 0.93407 0.91825 0.86353 0.91654 0.89251 0.89367 0.85925 0.86324 0.86533 0.86340 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.76 9.32 -47.65 -0.44 -8.21 16 3 C 0.05 1.00 6.28 37.16 0.23 1.23 16 4 C 0.12 2.80 5.44 -4.04 -0.02 2.77 16 5 N -0.43 -10.75 2.49 -114.81 -0.29 -11.04 16 6 C -0.35 -8.63 8.32 -14.93 -0.12 -8.76 16 7 H 0.09 2.10 6.66 -52.49 -0.35 1.75 16 8 C 0.05 1.16 5.02 -17.46 -0.09 1.07 16 9 N -0.86 -22.17 11.41 55.50 0.63 -21.53 16 10 Si 0.92 18.86 29.59 -169.99 -5.03 13.83 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 14 C 0.46 11.42 6.67 -10.98 -0.07 11.35 16 15 O -0.57 -15.39 15.20 -6.87 -0.10 -15.50 16 16 C 0.10 2.10 3.41 -27.88 -0.10 2.00 16 17 H 0.10 2.20 5.86 -51.93 -0.30 1.89 16 18 F -0.20 -4.62 16.75 2.25 0.04 -4.58 16 19 C -0.10 -1.73 4.82 -27.88 -0.13 -1.86 16 20 C -0.07 -1.20 5.00 -104.62 -0.52 -1.72 16 21 C -0.11 -1.66 9.70 -39.58 -0.38 -2.04 16 22 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.11 -1.59 9.55 -39.58 -0.38 -1.97 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.59 7.49 -51.93 -0.39 1.20 16 32 H 0.12 2.90 5.55 -51.93 -0.29 2.61 16 33 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 34 H 0.09 1.66 7.99 -51.93 -0.41 1.24 16 35 H 0.09 1.52 8.08 -51.93 -0.42 1.10 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -30.02 342.38 -7.23 -37.25 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.53 Total: 6.84 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.67 Total: -2.23 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.35 Total: -32.57 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.55 Total: -23.70 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.04 Total: -4.58 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.02 -7.23 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.833 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds