Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99700 * 2 1 4 4 C 1.53003 * 109.46881 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46967 * 65.00254 * 4 3 2 6 6 C 1.37098 * 120.00267 * 89.99754 * 5 4 3 7 7 H 1.07999 * 120.00061 * 219.71074 * 6 5 4 8 8 C 1.38949 * 119.99967 * 39.71032 * 6 5 4 9 9 N 1.31421 * 119.99782 * 18.11644 * 8 6 5 10 10 Si 1.86799 * 120.00015 * 198.11666 * 8 6 5 11 11 H 1.48505 * 109.46930 * 90.00346 * 10 8 6 12 12 H 1.48504 * 109.46777 * 209.99644 * 10 8 6 13 13 H 1.48493 * 109.47175 * 330.00052 * 10 8 6 14 14 C 1.34778 * 119.99849 * 269.72064 * 5 4 3 15 15 O 1.21295 * 120.00325 * 4.98362 * 14 5 4 16 16 C 1.50706 * 120.00135 * 184.97716 * 14 5 4 17 17 H 1.09000 * 109.46748 * 344.39215 * 16 14 5 18 18 F 1.39898 * 109.46981 * 104.39429 * 16 14 5 19 19 C 1.53004 * 109.47131 * 224.39525 * 16 14 5 20 20 C 1.50701 * 109.47091 * 175.00138 * 19 16 14 21 21 C 1.38234 * 119.99546 * 269.72920 * 20 19 16 22 22 C 1.38244 * 119.99371 * 179.76606 * 21 20 19 23 23 C 1.38232 * 120.00146 * 0.50449 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.74244 * 23 22 21 25 25 C 1.38234 * 120.00323 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47200 * 59.99425 * 1 2 3 27 27 H 1.08998 * 109.46667 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47183 * 299.99973 * 1 2 3 29 29 H 1.09000 * 109.47227 * 60.00167 * 3 2 1 30 30 H 1.09003 * 109.47157 * 300.00039 * 3 2 1 31 31 H 1.09001 * 109.47233 * 304.99721 * 4 3 2 32 32 H 1.09004 * 109.46932 * 185.00187 * 4 3 2 33 33 H 0.96998 * 119.99400 * 174.99160 * 9 8 6 34 34 H 1.09003 * 109.46830 * 295.00005 * 19 16 14 35 35 H 1.08998 * 109.47240 * 55.00118 * 19 16 14 36 36 H 1.08002 * 120.00511 * 359.97438 * 21 20 19 37 37 H 1.07999 * 119.99240 * 180.22857 * 22 21 20 38 38 H 1.08000 * 120.00014 * 179.72616 * 23 22 21 39 39 H 1.08004 * 120.00197 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.00462 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.2663 1.3471 -2.3403 7 1 3.9740 1.0271 -3.3295 8 6 4.9370 2.5520 -2.1698 9 7 5.6005 2.7833 -1.0592 10 14 4.8956 3.8431 -3.5191 11 1 3.7348 4.7446 -3.3061 12 1 6.1508 4.6359 -3.4843 13 1 4.7681 3.1754 -4.8393 14 6 4.1002 -0.7750 -1.3339 15 8 3.7622 -1.4732 -0.4014 16 6 4.6593 -1.4055 -2.5833 17 1 4.6454 -0.6780 -3.3949 18 9 5.9755 -1.8176 -2.3488 19 6 3.8068 -2.6161 -2.9691 20 6 4.2904 -3.1728 -4.2833 21 6 3.7503 -2.7123 -5.4695 22 6 4.1974 -3.2195 -6.6754 23 6 5.1771 -4.1945 -6.6944 24 6 5.7136 -4.6585 -5.5080 25 6 5.2700 -4.1480 -4.3024 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1766 0.0890 33 1 6.1281 3.5922 -0.9690 34 1 3.8918 -3.3810 -2.1972 35 1 2.7648 -2.3110 -3.0651 36 1 2.9814 -1.9540 -5.4545 37 1 3.7779 -2.8571 -7.6023 38 1 5.5232 -4.5939 -7.6363 39 1 6.4787 -5.4206 -5.5228 40 1 5.6888 -4.5108 -3.3754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837236644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = -117.711242 kcal Electronic energy + Delta-G solvation = -24316.576726 eV Core-core repulsion = 20624.400067 eV Total energy + Delta-G solvation = -3692.176660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.69691 -40.51040 -39.98795 -38.50478 -36.72862 -34.57141 -33.58855 -31.73918 -31.43445 -29.78304 -27.23865 -26.88262 -25.58848 -23.41554 -23.32084 -21.89713 -21.10981 -19.16224 -18.46730 -17.60471 -17.25272 -17.13537 -16.96032 -16.43083 -16.35773 -16.05230 -15.84647 -15.70927 -15.53057 -14.99660 -14.55894 -14.23536 -13.96000 -13.70099 -13.59056 -13.43066 -13.30912 -13.19549 -12.87890 -12.71540 -12.65615 -12.43690 -12.11002 -11.94316 -11.90037 -11.83943 -11.77854 -11.06960 -10.54368 -10.26446 -9.77647 -9.58499 -9.46117 -8.34280 -6.15360 0.44521 0.54515 1.41572 1.48279 1.59201 1.88826 2.27848 2.68842 2.93348 2.96946 3.09236 3.66901 3.83423 3.95919 4.04646 4.19866 4.21768 4.24603 4.28193 4.35126 4.36120 4.53431 4.57474 4.63684 4.67141 4.70235 4.80525 4.90991 4.94264 4.96456 5.15501 5.22000 5.22906 5.43979 5.60675 5.64881 5.76405 5.97458 6.16307 6.32637 6.43748 7.07067 7.46444 7.94818 8.69174 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.005640 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.631489 B = 4962.949050 C = 6074.221734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.435 5.435 6 C -0.366 4.366 7 H 0.099 0.901 8 C 0.009 3.991 9 N -0.893 5.893 10 Si 0.985 3.015 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.257 1.257 14 C 0.441 3.559 15 O -0.601 6.601 16 C 0.102 3.898 17 H 0.106 0.894 18 F -0.211 7.211 19 C -0.081 4.081 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.276 0.724 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -5.411 -9.671 12.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.018 4.018 4 C -0.008 4.008 5 N -0.153 5.153 6 C -0.493 4.493 7 H 0.117 0.883 8 C -0.195 4.195 9 N -0.530 5.530 10 Si 0.808 3.192 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.181 1.181 14 C 0.228 3.772 15 O -0.486 6.486 16 C 0.063 3.937 17 H 0.124 0.876 18 F -0.192 7.192 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.397 -5.722 -9.065 12.002 hybrid contribution 0.191 1.004 0.140 1.031 sum -5.206 -4.718 -8.925 11.359 Atomic orbital electron populations 1.22862 0.80664 1.03051 1.00451 1.88128 1.20525 1.28093 1.95376 1.22903 0.93932 0.84727 1.00199 1.21487 0.92193 1.00492 0.86654 1.43559 1.56095 1.03746 1.11885 1.19765 1.38871 1.02512 0.88145 0.88326 1.26309 0.93075 1.00597 0.99560 1.69917 1.26860 1.27718 1.28463 0.85052 0.77825 0.77771 0.78550 1.19231 1.20951 1.18075 1.21179 0.82382 0.84035 0.89638 1.90529 1.54290 1.62706 1.41110 1.21484 0.77714 0.97235 0.97287 0.87632 1.92747 1.38450 1.91880 1.96164 1.20852 0.99473 0.96102 0.95452 1.19803 0.98025 0.97709 0.94272 1.21298 1.00663 1.00273 0.92149 1.21460 0.97463 0.97056 0.98014 1.21523 0.96692 0.97110 0.98894 1.21424 1.00308 1.00491 0.92020 1.21228 0.96848 0.97099 0.99130 0.93740 0.89382 0.93016 0.91558 0.93244 0.94345 0.87340 0.91399 0.90627 0.89015 0.85231 0.83445 0.83192 0.83911 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.04 9.32 -137.11 -1.28 -18.32 16 3 C 0.06 2.44 6.28 71.98 0.45 2.89 16 4 C 0.12 5.65 5.44 86.38 0.47 6.12 16 5 N -0.43 -22.37 2.49 -635.52 -1.58 -23.95 16 6 C -0.37 -18.20 8.32 84.04 0.70 -17.50 16 7 H 0.10 4.61 6.66 -2.91 -0.02 4.59 16 8 C 0.01 0.41 5.02 84.92 0.43 0.84 16 9 N -0.89 -46.55 11.41 21.66 0.25 -46.30 16 10 Si 0.99 37.84 29.59 68.60 2.03 39.87 16 11 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 14 C 0.44 22.79 6.67 87.66 0.58 23.38 16 15 O -0.60 -33.87 15.20 8.80 0.13 -33.73 16 16 C 0.10 4.52 3.41 29.85 0.10 4.62 16 17 H 0.11 4.58 5.86 -2.39 -0.01 4.56 16 18 F -0.21 -10.06 16.75 44.97 0.75 -9.30 16 19 C -0.08 -3.00 4.82 29.85 0.14 -2.85 16 20 C -0.10 -3.13 5.00 -19.87 -0.10 -3.23 16 21 C -0.13 -3.45 9.70 22.27 0.22 -3.24 16 22 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 23 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 24 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.12 -3.72 9.55 22.27 0.21 -3.51 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 2.02 7.49 -2.39 -0.02 2.00 16 32 H 0.11 5.48 5.55 -2.38 -0.01 5.47 16 33 H 0.28 13.49 8.32 -92.71 -0.77 12.72 16 34 H 0.08 2.96 7.99 -2.39 -0.02 2.94 16 35 H 0.09 3.25 8.08 -2.39 -0.02 3.23 16 36 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -65.97 342.38 6.46 -59.51 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 1.03 Total: 30.31 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 5.13 Total: 1.92 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.33 Total: -70.26 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.14 Total: -52.05 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 0.75 Total: -9.30 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -65.97 6.46 -59.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.203 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds