Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99680 * 2 1 4 4 C 1.50706 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.38342 * 119.86419 * 0.27321 * 4 3 2 6 6 C 1.37940 * 120.17522 * 180.27630 * 5 4 3 7 7 C 1.39599 * 119.90240 * 359.72692 * 6 5 4 8 8 C 1.47854 * 120.13145 * 180.02562 * 7 6 5 9 9 O 1.21550 * 119.99556 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00001 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46951 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46884 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47237 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99469 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99901 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46735 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47021 * 209.99604 * 18 16 14 21 21 H 1.48492 * 109.47183 * 330.00072 * 18 16 14 22 22 C 1.39529 * 119.73393 * 359.97438 * 7 6 5 23 23 C 1.38204 * 119.82840 * 0.02562 * 22 7 6 24 24 F 1.35104 * 119.95575 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47341 * 299.99981 * 1 2 3 27 27 H 1.08998 * 109.47103 * 59.99927 * 1 2 3 28 28 H 1.09005 * 109.47551 * 60.00261 * 3 2 1 29 29 H 1.09004 * 109.47273 * 299.99793 * 3 2 1 30 30 H 1.08003 * 119.91247 * 0.02562 * 5 4 3 31 31 H 1.07996 * 120.05227 * 179.70037 * 6 5 4 32 32 H 0.97006 * 120.00057 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.46948 * 299.99766 * 11 10 8 34 34 H 1.08999 * 109.47078 * 59.99980 * 11 10 8 35 35 H 1.09002 * 109.47176 * 299.99715 * 12 11 10 36 36 H 1.08999 * 109.47174 * 60.00127 * 12 11 10 37 37 H 1.09002 * 109.47088 * 299.99900 * 13 12 11 38 38 H 1.09004 * 109.47386 * 59.99903 * 13 12 11 39 39 H 0.96998 * 119.99912 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.08323 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1046 -0.0637 -0.0068 6 6 5.4791 -0.1800 -0.0017 7 6 6.2746 0.9672 0.0040 8 6 7.7483 0.8485 0.0090 9 8 8.4386 1.8489 0.0134 10 7 8.3263 -0.3691 0.0085 11 6 9.7865 -0.4867 0.0139 12 6 10.1790 -1.9655 0.0128 13 6 11.7040 -2.0884 0.0179 14 6 12.0907 -3.5450 0.0174 15 1 11.3252 -4.3068 0.0142 16 6 13.4216 -3.9050 0.0209 17 7 13.7590 -5.1761 0.0210 18 14 14.7456 -2.5872 0.0271 19 1 15.0920 -2.2402 1.4289 20 1 15.9540 -3.0964 -0.6699 21 1 14.2433 -1.3776 -0.6725 22 6 5.6733 2.2263 0.0039 23 6 4.2951 2.3299 -0.0012 24 9 3.7102 3.5478 -0.0018 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.4890 -0.9511 -0.0116 31 1 5.9392 -1.1570 -0.0017 32 1 7.7754 -1.1675 0.0053 33 1 10.1934 -0.0017 -0.8734 34 1 10.1864 -0.0057 0.9066 35 1 9.7721 -2.4501 0.9004 36 1 9.7791 -2.4469 -0.8796 37 1 12.1105 -1.6039 -0.8699 38 1 12.1044 -1.6069 0.9101 39 1 14.6953 -5.4294 0.0239 40 1 6.2832 3.1175 0.0079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865167545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = -114.271436 kcal Electronic energy + Delta-G solvation = -22201.813072 eV Core-core repulsion = 18509.785574 eV Total energy + Delta-G solvation = -3692.027499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.29078 -40.36909 -39.00421 -37.78029 -35.63377 -33.47749 -32.63102 -31.52565 -30.82981 -28.29974 -27.15563 -26.05441 -23.46624 -23.04592 -22.29346 -20.80172 -20.14567 -18.39296 -17.37481 -16.85247 -16.68767 -16.62127 -16.18623 -16.04010 -15.82622 -15.49515 -15.44035 -14.65491 -14.27368 -14.10668 -13.85348 -13.58635 -13.41889 -13.38594 -12.72127 -12.38149 -12.32339 -11.99725 -11.92568 -11.77883 -11.59593 -11.10999 -10.91575 -10.39757 -10.30854 -10.02673 -9.82833 -9.66491 -9.34193 -9.24727 -9.12472 -8.89462 -8.56888 -6.07631 -4.06526 0.34006 0.81314 2.57424 3.05687 3.12365 3.30486 3.38210 3.42225 3.46874 3.87065 4.16809 4.42349 4.43230 4.60470 4.62998 4.73680 4.77259 4.87245 4.93563 5.00286 5.18858 5.26399 5.30122 5.48988 5.61123 5.65091 5.68020 5.81881 5.88037 5.96952 6.25804 6.39645 6.40486 6.56969 6.63263 6.74933 7.20174 7.33695 7.50528 7.74462 8.16778 8.48599 8.96008 9.54523 11.05529 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028052 B = 0.002385 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.921629 B =11735.472042 C =12697.028543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.103 3.897 4 C -0.105 4.105 5 C -0.075 4.075 6 C -0.095 4.095 7 C -0.101 4.101 8 C 0.552 3.448 9 O -0.537 6.537 10 N -0.717 5.717 11 C 0.113 3.887 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.095 4.095 23 C 0.095 3.905 24 F -0.135 7.135 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.299 12.922 -0.088 30.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.106 4.106 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.104 4.104 8 C 0.338 3.662 9 O -0.415 6.415 10 N -0.368 5.368 11 C -0.009 4.009 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.114 4.114 23 C 0.076 3.924 24 F -0.114 7.114 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.521 13.381 -0.087 29.706 hybrid contribution 0.229 0.602 0.025 0.645 sum -26.292 13.983 -0.062 29.779 Atomic orbital electron populations 1.22789 0.80160 1.03262 1.00274 1.87834 1.20285 1.26802 1.95549 1.21143 0.89116 0.85493 1.01547 1.19863 0.94945 0.92952 1.02851 1.20850 0.94115 0.97129 0.97191 1.21482 0.93743 0.98232 0.97969 1.19894 0.93674 0.93411 1.03405 1.18131 0.86977 0.83905 0.77139 1.90784 1.64380 1.36501 1.49830 1.46089 1.09138 1.07549 1.74006 1.21730 0.77475 0.99472 1.02250 1.21721 0.99977 0.91651 1.01851 1.19507 0.90512 0.98191 0.96719 1.21086 0.93133 0.90657 1.51153 0.90984 1.25032 0.98754 0.95261 0.94466 1.69910 1.17583 1.15698 1.50941 0.86775 0.81362 0.82557 0.78597 1.20238 1.21363 1.18898 1.21159 0.92350 0.99042 0.98871 1.17185 0.90716 0.79588 1.04939 1.91510 1.84366 1.41491 1.93986 0.89117 0.93773 0.93766 0.91243 0.91252 0.83267 0.84409 0.76447 0.91448 0.91463 0.92003 0.91981 0.96256 0.96697 0.92683 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.93 9.17 -35.23 -0.32 -3.26 16 3 C 0.10 0.75 5.90 36.01 0.21 0.96 16 4 C -0.10 -0.95 5.89 -104.47 -0.62 -1.56 16 5 C -0.07 -0.65 9.36 -39.65 -0.37 -1.02 16 6 C -0.10 -0.87 9.54 -39.18 -0.37 -1.24 16 7 C -0.10 -1.16 5.87 -104.97 -0.62 -1.77 16 8 C 0.55 7.94 7.77 -12.33 -0.10 7.85 16 9 O -0.54 -9.66 16.35 5.32 0.09 -9.58 16 10 N -0.72 -9.58 5.51 -61.25 -0.34 -9.92 16 11 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16 12 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 15 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 C -0.09 -1.06 9.57 -39.11 -0.37 -1.44 16 23 C 0.10 0.96 7.24 -39.48 -0.29 0.67 16 24 F -0.13 -1.36 16.79 2.25 0.04 -1.33 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.15 1.12 6.99 -52.48 -0.37 0.75 16 31 H 0.14 0.95 6.40 -52.49 -0.34 0.62 16 32 H 0.40 4.19 6.51 -40.82 -0.27 3.93 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 40 H 0.15 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -33.04 344.15 -6.89 -39.93 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.53 Total: -1.06 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.11 Total: -10.13 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.44 Total: -36.70 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.24 Total: -12.83 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.04 -6.89 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865167545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.342 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds