Wall clock time and date at job start Tue Mar 31 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99967 * 2 1 4 4 H 1.09000 * 109.46978 * 24.42069 * 3 2 1 5 5 C 1.53005 * 109.46835 * 144.41873 * 3 2 1 6 6 N 1.46501 * 109.46969 * 300.00315 * 5 3 2 7 7 C 1.39927 * 119.99542 * 180.02562 * 6 5 3 8 8 C 1.38718 * 120.08124 * 359.72844 * 7 6 5 9 9 C 1.38214 * 120.01322 * 179.69678 * 8 7 6 10 10 C 1.38535 * 120.17879 * 0.59679 * 9 8 7 11 11 F 1.35096 * 119.92115 * 179.69933 * 10 9 8 12 12 C 1.38352 * 120.15879 * 359.68001 * 10 9 8 13 13 C 1.38733 * 119.97895 * 0.02562 * 12 10 9 14 14 O 1.35800 * 120.08322 * 180.02562 * 13 12 10 15 15 C 1.34799 * 117.00027 * 354.36409 * 14 13 12 16 16 H 1.07994 * 120.00169 * 5.06471 * 15 14 13 17 17 C 1.38628 * 119.99527 * 185.06010 * 15 14 13 18 18 N 1.31573 * 120.00425 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99813 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47094 * 90.00000 * 19 17 15 21 21 H 1.48502 * 109.47053 * 210.00408 * 19 17 15 22 22 H 1.48502 * 109.46865 * 329.99877 * 19 17 15 23 23 C 1.52993 * 109.47254 * 264.41868 * 3 2 1 24 24 C 1.52999 * 117.49943 * 10.28241 * 23 3 2 25 25 C 1.53006 * 117.50185 * 301.62103 * 23 3 2 26 26 H 1.08995 * 109.46651 * 184.88608 * 1 2 3 27 27 H 1.09001 * 109.47111 * 304.88208 * 1 2 3 28 28 H 1.08995 * 109.47344 * 64.88494 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00318 * 5 3 2 30 30 H 1.08997 * 109.46946 * 180.02562 * 5 3 2 31 31 H 0.96994 * 120.00408 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.99003 * 359.97438 * 8 7 6 33 33 H 1.08000 * 119.91048 * 180.27720 * 9 8 7 34 34 H 1.07999 * 120.01137 * 180.02562 * 12 10 9 35 35 H 0.97000 * 120.00160 * 179.97438 * 18 17 15 36 36 H 1.09009 * 115.54784 * 155.94961 * 23 3 2 37 37 H 1.08991 * 117.50020 * 359.97438 * 24 23 3 38 38 H 1.09006 * 117.49736 * 145.02333 * 24 23 3 39 39 H 1.09000 * 117.49439 * 214.97959 * 25 23 3 40 40 H 1.08992 * 117.49439 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3032 2.0180 0.4249 5 6 3.2894 1.2942 0.8394 6 7 2.9680 0.9026 2.2140 7 6 3.9831 0.8211 3.1737 8 6 5.2951 1.1053 2.8239 9 6 6.2957 1.0305 3.7744 10 6 5.9945 0.6600 5.0749 11 9 6.9776 0.5827 5.9983 12 6 4.6894 0.3695 5.4304 13 6 3.6790 0.4484 4.4830 14 8 2.3971 0.1641 4.8297 15 6 2.1895 -0.3007 6.0779 16 1 3.0103 -0.3543 6.7777 17 6 0.9222 -0.7097 6.4632 18 7 -0.0778 -0.6447 5.6106 19 14 0.6342 -1.3531 8.1932 20 1 0.2710 -0.2244 9.0870 21 1 -0.4706 -2.3453 8.1747 22 1 1.8733 -2.0013 8.6928 23 6 2.3458 1.7144 -1.4356 24 6 1.8080 0.8335 -2.5651 25 6 3.2998 0.8131 -2.2222 26 1 -0.3632 -1.0239 0.0875 27 1 -0.3633 0.5877 0.8430 28 1 -0.3634 0.4362 -0.9304 29 1 3.9965 0.5817 0.4145 30 1 3.7325 2.2900 0.8398 31 1 2.0517 0.6998 2.4589 32 1 5.5339 1.3894 1.8097 33 1 7.3158 1.2564 3.5013 34 1 4.4573 0.0813 6.4450 35 1 -0.9644 -0.9312 5.8801 36 1 2.4023 2.7877 -1.6177 37 1 1.2155 -0.0375 -2.2854 38 1 1.5112 1.3272 -3.4905 39 1 3.9836 1.2935 -2.9221 40 1 3.6886 -0.0708 -1.7168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877174160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:41 Heat of formation + Delta-G solvation = -62.333155 kcal Electronic energy + Delta-G solvation = -23710.605348 eV Core-core repulsion = 20020.830062 eV Total energy + Delta-G solvation = -3689.775286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.01675 -39.46758 -38.88885 -36.51039 -35.80120 -34.50882 -32.28133 -30.15220 -29.22128 -27.18566 -26.02519 -25.36492 -23.78547 -22.37082 -21.63789 -20.88288 -20.11683 -18.14915 -17.60201 -16.95012 -16.29631 -16.10745 -15.59976 -15.11441 -14.80765 -14.76617 -14.53487 -14.18475 -13.94001 -13.78785 -13.43759 -13.32630 -13.09280 -12.89164 -12.15543 -12.03880 -11.82699 -11.70078 -11.49067 -11.38966 -11.28214 -11.08701 -10.77179 -10.54181 -10.47761 -10.37704 -10.05229 -9.61128 -9.50362 -9.19662 -8.83689 -7.70887 -6.47058 -6.39260 -4.01404 2.15977 2.27476 3.13055 3.14855 3.19302 3.61188 3.78991 3.94427 4.04864 4.50677 4.68171 4.81987 4.86544 5.00126 5.11014 5.20415 5.26805 5.31988 5.37744 5.47675 5.54380 5.58928 5.63178 5.76785 5.79835 5.85978 5.87358 5.98270 6.06601 6.13070 6.15428 6.47234 6.62222 6.84810 7.05948 7.13537 7.25254 7.27748 7.65393 7.94626 8.07664 8.46732 9.00079 9.66907 10.71187 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.005094 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.771224 B = 5495.480531 C = 7704.699717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.107 3.893 4 H 0.072 0.928 5 C 0.139 3.861 6 N -0.740 5.740 7 C 0.156 3.844 8 C -0.148 4.148 9 C -0.194 4.194 10 C 0.084 3.916 11 F -0.158 7.158 12 C -0.241 4.241 13 C 0.121 3.879 14 O -0.176 6.176 15 C -0.385 4.385 16 H 0.091 0.909 17 C 0.040 3.960 18 N -0.864 5.864 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.179 4.179 24 C -0.172 4.172 25 C -0.169 4.169 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.409 0.591 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 3.990 -12.675 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.049 3.951 4 H 0.090 0.910 5 C 0.014 3.986 6 N -0.374 5.374 7 C 0.055 3.945 8 C -0.172 4.172 9 C -0.214 4.214 10 C 0.063 3.937 11 F -0.137 7.137 12 C -0.262 4.262 13 C 0.066 3.934 14 O -0.081 6.081 15 C -0.462 4.462 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.499 5.499 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.198 4.198 24 C -0.208 4.208 25 C -0.206 4.206 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.245 0.755 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.573 3.822 -12.926 13.722 hybrid contribution -0.458 -0.156 1.140 1.239 sum 2.115 3.666 -11.785 12.522 Atomic orbital electron populations 1.22860 0.80934 1.03066 0.99870 1.87964 1.19726 1.26735 1.94618 1.21805 0.95211 0.85566 0.92518 0.91011 1.21238 0.95481 0.99651 0.82234 1.44193 1.09084 1.77678 1.06481 1.17098 0.88911 1.02011 0.86502 1.19920 0.90113 1.08175 0.98987 1.20287 0.99241 1.10000 0.91898 1.17223 0.84659 1.05378 0.86439 1.91373 1.61613 1.94645 1.66086 1.20784 0.91067 1.12804 1.01552 1.18600 0.86067 0.97836 0.90932 1.83893 1.18967 1.72263 1.32937 1.21286 0.96106 1.42381 0.86387 0.89146 1.25224 0.94425 0.96843 0.99881 1.70021 1.00700 1.44451 1.34761 0.85730 0.78649 0.78747 0.80463 1.19930 1.20308 1.19160 1.22791 1.06676 0.97594 0.92776 1.22937 0.97402 1.02481 0.98021 1.22894 0.92655 1.02155 1.02856 0.89626 0.93405 0.94318 0.92137 0.91807 0.75467 0.86191 0.86583 0.84496 0.92149 0.87236 0.87930 0.89295 0.89082 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.21 101.05 1.03 1.40 16 2 O -0.37 -5.40 8.81 -35.23 -0.31 -5.71 16 3 C 0.11 1.37 2.64 -26.73 -0.07 1.30 16 4 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16 5 C 0.14 1.99 4.46 -4.04 -0.02 1.97 16 6 N -0.74 -13.81 5.62 -58.45 -0.33 -14.13 16 7 C 0.16 3.24 6.67 -83.52 -0.56 2.68 16 8 C -0.15 -2.68 9.31 -39.41 -0.37 -3.04 16 9 C -0.19 -3.58 10.02 -39.48 -0.40 -3.97 16 10 C 0.08 1.74 7.29 -39.43 -0.29 1.45 16 11 F -0.16 -3.18 17.26 2.25 0.04 -3.14 16 12 C -0.24 -5.50 9.14 -39.36 -0.36 -5.86 16 13 C 0.12 2.90 6.67 -38.93 -0.26 2.64 16 14 O -0.18 -4.82 9.00 -0.02 0.00 -4.82 16 15 C -0.39 -10.61 9.49 30.88 0.29 -10.32 16 16 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.44 13.67 55.48 0.76 -23.69 16 19 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.18 -1.85 5.83 -90.62 -0.53 -2.38 16 24 C -0.17 -1.68 9.47 -26.69 -0.25 -1.93 16 25 C -0.17 -1.68 9.68 -26.69 -0.26 -1.94 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.63 7.99 -51.93 -0.41 0.21 16 28 H 0.04 0.40 7.26 -51.93 -0.38 0.02 16 29 H 0.06 0.87 7.19 -51.93 -0.37 0.49 16 30 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 31 H 0.41 8.45 7.71 -40.82 -0.31 8.14 16 32 H 0.12 1.81 6.73 -52.49 -0.35 1.46 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.14 3.17 5.64 -52.49 -0.30 2.87 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 37 H 0.10 1.11 6.10 -51.93 -0.32 0.79 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.12 7.71 -51.93 -0.40 0.72 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -29.52 337.71 -7.08 -36.61 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.18 Total: 11.37 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.13 Total: -17.02 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.43 Total: -37.82 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.31 Total: -10.54 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.52 -7.08 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877174160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.727 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds