Wall clock time and date at job start Tue Mar 31 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99967 * 2 1 4 4 H 1.09000 * 109.46978 * 24.42069 * 3 2 1 5 5 C 1.53005 * 109.46835 * 144.41873 * 3 2 1 6 6 N 1.46501 * 109.46969 * 300.00315 * 5 3 2 7 7 C 1.39927 * 119.99542 * 180.02562 * 6 5 3 8 8 C 1.38718 * 120.08124 * 359.72844 * 7 6 5 9 9 C 1.38214 * 120.01322 * 179.69678 * 8 7 6 10 10 C 1.38535 * 120.17879 * 0.59679 * 9 8 7 11 11 F 1.35096 * 119.92115 * 179.69933 * 10 9 8 12 12 C 1.38352 * 120.15879 * 359.68001 * 10 9 8 13 13 C 1.38733 * 119.97895 * 0.02562 * 12 10 9 14 14 O 1.35800 * 120.08322 * 180.02562 * 13 12 10 15 15 C 1.34799 * 117.00027 * 354.36409 * 14 13 12 16 16 H 1.07994 * 120.00169 * 5.06471 * 15 14 13 17 17 C 1.38628 * 119.99527 * 185.06010 * 15 14 13 18 18 N 1.31573 * 120.00425 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99813 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47094 * 90.00000 * 19 17 15 21 21 H 1.48502 * 109.47053 * 210.00408 * 19 17 15 22 22 H 1.48502 * 109.46865 * 329.99877 * 19 17 15 23 23 C 1.52993 * 109.47254 * 264.41868 * 3 2 1 24 24 C 1.52999 * 117.49943 * 10.28241 * 23 3 2 25 25 C 1.53006 * 117.50185 * 301.62103 * 23 3 2 26 26 H 1.08995 * 109.46651 * 184.88608 * 1 2 3 27 27 H 1.09001 * 109.47111 * 304.88208 * 1 2 3 28 28 H 1.08995 * 109.47344 * 64.88494 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00318 * 5 3 2 30 30 H 1.08997 * 109.46946 * 180.02562 * 5 3 2 31 31 H 0.96994 * 120.00408 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.99003 * 359.97438 * 8 7 6 33 33 H 1.08000 * 119.91048 * 180.27720 * 9 8 7 34 34 H 1.07999 * 120.01137 * 180.02562 * 12 10 9 35 35 H 0.97000 * 120.00160 * 179.97438 * 18 17 15 36 36 H 1.09009 * 115.54784 * 155.94961 * 23 3 2 37 37 H 1.08991 * 117.50020 * 359.97438 * 24 23 3 38 38 H 1.09006 * 117.49736 * 145.02333 * 24 23 3 39 39 H 1.09000 * 117.49439 * 214.97959 * 25 23 3 40 40 H 1.08992 * 117.49439 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3032 2.0180 0.4249 5 6 3.2894 1.2942 0.8394 6 7 2.9680 0.9026 2.2140 7 6 3.9831 0.8211 3.1737 8 6 5.2951 1.1053 2.8239 9 6 6.2957 1.0305 3.7744 10 6 5.9945 0.6600 5.0749 11 9 6.9776 0.5827 5.9983 12 6 4.6894 0.3695 5.4304 13 6 3.6790 0.4484 4.4830 14 8 2.3971 0.1641 4.8297 15 6 2.1895 -0.3007 6.0779 16 1 3.0103 -0.3543 6.7777 17 6 0.9222 -0.7097 6.4632 18 7 -0.0778 -0.6447 5.6106 19 14 0.6342 -1.3531 8.1932 20 1 0.2710 -0.2244 9.0870 21 1 -0.4706 -2.3453 8.1747 22 1 1.8733 -2.0013 8.6928 23 6 2.3458 1.7144 -1.4356 24 6 1.8080 0.8335 -2.5651 25 6 3.2998 0.8131 -2.2222 26 1 -0.3632 -1.0239 0.0875 27 1 -0.3633 0.5877 0.8430 28 1 -0.3634 0.4362 -0.9304 29 1 3.9965 0.5817 0.4145 30 1 3.7325 2.2900 0.8398 31 1 2.0517 0.6998 2.4589 32 1 5.5339 1.3894 1.8097 33 1 7.3158 1.2564 3.5013 34 1 4.4573 0.0813 6.4450 35 1 -0.9644 -0.9312 5.8801 36 1 2.4023 2.7877 -1.6177 37 1 1.2155 -0.0375 -2.2854 38 1 1.5112 1.3272 -3.4905 39 1 3.9836 1.2935 -2.9221 40 1 3.6886 -0.0708 -1.7168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877174160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:41 Heat of formation + Delta-G solvation = -80.087389 kcal Electronic energy + Delta-G solvation = -23711.375229 eV Core-core repulsion = 20020.830062 eV Total energy + Delta-G solvation = -3690.545167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.62945 -40.93943 -40.12820 -38.21919 -36.70214 -35.95594 -34.25806 -31.43456 -30.90510 -28.60406 -27.30841 -27.10575 -24.99244 -23.38567 -23.07136 -22.39305 -21.08519 -19.99429 -19.28041 -18.08101 -17.58341 -17.48139 -16.97014 -16.81142 -16.44786 -16.10814 -15.87482 -15.50006 -15.41005 -15.23789 -15.07189 -14.70909 -14.64200 -14.01831 -13.78502 -13.57036 -13.20069 -12.97796 -12.90029 -12.67375 -12.47090 -12.22034 -12.19265 -12.08031 -12.01658 -11.50008 -11.25766 -10.89946 -10.79182 -10.68779 -10.55946 -9.42293 -8.46028 -8.00443 -6.08155 0.50064 0.63055 1.35037 1.42431 1.50636 2.16508 2.53331 2.77589 2.80316 2.92540 3.11580 3.35683 3.65757 3.80158 3.93500 3.99356 4.04532 4.25796 4.29793 4.34193 4.43913 4.49320 4.54169 4.56879 4.69430 4.77705 4.84165 4.85421 4.94269 5.03154 5.07376 5.13085 5.27329 5.34537 5.37478 5.45126 5.48020 5.97446 6.05804 6.24178 6.56725 6.82483 6.99675 7.76845 8.75854 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.005094 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.771224 B = 5495.480531 C = 7704.699717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.106 3.894 4 H 0.069 0.931 5 C 0.136 3.864 6 N -0.743 5.743 7 C 0.154 3.846 8 C -0.137 4.137 9 C -0.163 4.163 10 C 0.063 3.937 11 F -0.155 7.155 12 C -0.246 4.246 13 C 0.079 3.921 14 O -0.216 6.216 15 C -0.409 4.409 16 H 0.092 0.908 17 C -0.015 4.015 18 N -0.911 5.911 19 Si 1.010 2.990 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.260 1.260 23 C -0.178 4.178 24 C -0.170 4.170 25 C -0.166 4.166 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.396 0.604 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 4.978 -14.396 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.048 3.952 4 H 0.087 0.913 5 C 0.012 3.988 6 N -0.374 5.374 7 C 0.051 3.949 8 C -0.161 4.161 9 C -0.182 4.182 10 C 0.042 3.958 11 F -0.134 7.134 12 C -0.268 4.268 13 C 0.026 3.974 14 O -0.123 6.123 15 C -0.486 4.486 16 H 0.109 0.891 17 C -0.213 4.213 18 N -0.549 5.549 19 Si 0.830 3.170 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.197 4.197 24 C -0.207 4.207 25 C -0.203 4.203 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.229 0.771 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.523 4.834 -14.688 16.111 hybrid contribution -0.827 -0.390 1.501 1.758 sum 3.696 4.444 -13.187 14.398 Atomic orbital electron populations 1.22891 0.80234 1.03036 1.00485 1.87920 1.20632 1.28029 1.94856 1.21864 0.94398 0.84842 0.94082 0.91335 1.21533 0.96606 1.00717 0.79924 1.44444 1.08054 1.77041 1.07885 1.17453 0.90544 1.01121 0.85823 1.20389 0.88488 1.06348 1.00827 1.20799 1.01228 1.05890 0.90316 1.17325 0.83881 1.06898 0.87712 1.91376 1.61097 1.94746 1.66223 1.20843 0.92328 1.12715 1.00876 1.19089 0.85502 1.00007 0.92832 1.83861 1.20866 1.74587 1.32947 1.21654 0.96713 1.43118 0.87065 0.89063 1.26347 0.93830 0.96885 1.04229 1.70143 1.01208 1.46494 1.37039 0.84702 0.78769 0.78383 0.75127 1.18911 1.19422 1.18421 1.22747 1.07234 0.98700 0.91016 1.22981 0.97265 1.01976 0.98496 1.22923 0.93025 1.01499 1.02889 0.89745 0.94845 0.91887 0.91655 0.89464 0.77106 0.82044 0.82460 0.86078 0.91946 0.85193 0.89311 0.87335 0.87019 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.21 113.37 1.16 1.91 16 2 O -0.40 -11.49 8.81 -148.98 -1.31 -12.80 16 3 C 0.11 2.59 2.64 30.59 0.08 2.67 16 4 H 0.07 1.70 7.65 -2.39 -0.02 1.68 16 5 C 0.14 3.61 4.46 86.38 0.39 4.00 16 6 N -0.74 -27.66 5.62 -338.85 -1.91 -29.56 16 7 C 0.15 6.28 6.67 38.27 0.26 6.53 16 8 C -0.14 -4.49 9.31 22.38 0.21 -4.28 16 9 C -0.16 -5.38 10.02 22.33 0.22 -5.16 16 10 C 0.06 2.53 7.29 22.37 0.16 2.69 16 11 F -0.16 -6.02 17.26 44.97 0.78 -5.24 16 12 C -0.25 -11.53 9.14 22.42 0.20 -11.33 16 13 C 0.08 3.89 6.67 22.69 0.15 4.04 16 14 O -0.22 -12.51 9.00 -22.98 -0.21 -12.72 16 15 C -0.41 -23.76 9.49 67.91 0.64 -23.12 16 16 H 0.09 5.05 5.21 -2.91 -0.02 5.03 16 17 C -0.01 -0.82 5.49 84.82 0.47 -0.35 16 18 N -0.91 -54.05 13.67 21.61 0.30 -53.76 16 19 Si 1.01 43.26 29.55 68.60 2.03 45.29 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 C -0.18 -3.21 5.83 -10.79 -0.06 -3.27 16 24 C -0.17 -2.93 9.47 30.62 0.29 -2.64 16 25 C -0.17 -2.86 9.68 30.62 0.30 -2.56 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.03 0.92 7.99 -2.39 -0.02 0.90 16 28 H 0.06 1.26 7.26 -2.39 -0.02 1.24 16 29 H 0.07 1.70 7.19 -2.39 -0.02 1.68 16 30 H 0.09 1.94 7.96 -2.39 -0.02 1.92 16 31 H 0.40 17.05 7.71 -92.71 -0.72 16.34 16 32 H 0.16 3.98 6.73 -2.91 -0.02 3.97 16 33 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.12 5.91 5.64 -2.91 -0.02 5.90 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.09 1.80 6.10 -2.39 -0.01 1.78 16 38 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.71 7.71 -2.39 -0.02 1.69 16 Total: -1.00 -67.60 337.71 4.50 -63.11 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.36 Total: 36.57 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.46 Total: -30.88 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.61 Total: -83.32 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.52 Total: -25.52 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.60 4.50 -63.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877174160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.982 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds