Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38628 * 120.06533 * 359.72300 * 3 2 1 5 5 C 1.38215 * 120.03883 * 179.70090 * 4 3 2 6 6 C 1.38265 * 120.16145 * 0.60138 * 5 4 3 7 7 C 1.50697 * 119.94018 * 179.70105 * 6 5 4 8 8 N 1.46894 * 109.46976 * 259.97489 * 7 6 5 9 9 C 1.47482 * 111.00251 * 265.97118 * 8 7 6 10 10 C 1.53513 * 87.93041 * 221.29914 * 9 8 7 11 11 C 1.50699 * 114.34347 * 139.68666 * 10 9 8 12 12 H 1.08000 * 120.00400 * 266.07772 * 11 10 9 13 13 C 1.37878 * 120.00280 * 86.06877 * 11 10 9 14 14 N 1.31513 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00250 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47287 * 120.00269 * 15 13 11 18 18 H 1.48496 * 109.47524 * 240.00189 * 15 13 11 19 19 C 1.47489 * 110.99892 * 169.99980 * 8 7 6 20 20 C 1.38412 * 120.11750 * 359.67776 * 6 5 4 21 21 F 1.35096 * 120.01820 * 180.02562 * 20 6 5 22 22 C 1.38755 * 119.96089 * 0.02562 * 20 6 5 23 23 O 1.36060 * 120.07749 * 179.97438 * 22 20 6 24 24 C 1.42898 * 116.99667 * 270.01923 * 23 22 20 25 25 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 26 26 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.97489 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91870 * 180.27958 * 5 4 3 30 30 H 1.09004 * 109.47073 * 19.98087 * 7 6 5 31 31 H 1.08999 * 109.47030 * 139.97772 * 7 6 5 32 32 H 1.08997 * 113.47356 * 336.06536 * 9 8 7 33 33 H 1.08993 * 113.47382 * 106.53057 * 9 8 7 34 34 H 1.09002 * 114.16988 * 272.37658 * 10 9 8 35 35 H 0.96999 * 120.00328 * 180.02562 * 14 13 11 36 36 H 1.09001 * 113.47337 * 253.47272 * 19 8 7 37 37 H 1.09002 * 113.47148 * 23.87782 * 19 8 7 38 38 H 1.08997 * 109.46969 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47394 * 300.00408 * 24 23 22 40 40 H 1.09002 * 109.47041 * 59.99953 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2926 2.3752 -0.0058 5 6 1.9205 3.6065 0.0004 6 6 3.3011 3.6822 -0.0001 7 6 3.9805 5.0273 0.0000 8 7 4.4159 5.3559 -1.3639 9 6 5.8160 4.9483 -1.5845 10 6 6.0239 6.2700 -2.3371 11 6 7.3426 6.9436 -2.0571 12 1 7.4111 7.6976 -1.2869 13 6 8.4618 6.5971 -2.7839 14 7 8.3785 5.6791 -3.7220 15 14 10.0965 7.4315 -2.4363 16 1 9.9249 8.4195 -1.3410 17 1 11.0965 6.4114 -2.0300 18 1 10.5680 8.1264 -3.6610 19 6 4.8688 6.7569 -1.4511 20 6 4.0602 2.5248 -0.0001 21 9 5.4090 2.6012 -0.0001 22 6 3.4350 1.2861 -0.0002 23 8 4.1788 0.1468 -0.0007 24 6 4.5333 -0.3958 -1.2742 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2140 2.3194 -0.0099 29 1 1.3313 4.5116 0.0005 30 1 3.2824 5.7870 0.3516 31 1 4.8470 4.9967 0.6605 32 1 6.3971 4.8761 -0.6651 33 1 5.9170 4.0672 -2.2181 34 1 5.7823 6.2218 -3.3989 35 1 9.1659 5.4351 -4.2331 36 1 4.1670 7.4085 -1.9717 37 1 5.1961 7.1675 -0.4959 38 1 5.1245 -1.3003 -1.1319 39 1 3.6280 -0.6368 -1.8313 40 1 5.1183 0.3363 -1.8310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895254510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = -52.075494 kcal Electronic energy + Delta-G solvation = -24053.799615 eV Core-core repulsion = 20364.469135 eV Total energy + Delta-G solvation = -3689.330480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.66952 -40.47131 -38.98174 -38.09348 -37.00036 -32.83807 -31.49867 -30.27845 -28.53476 -27.49591 -26.74124 -25.34591 -24.75664 -22.85542 -22.47246 -20.94430 -18.65681 -18.55209 -17.42579 -17.24719 -16.60016 -16.32853 -15.92176 -15.51777 -14.99912 -14.77479 -14.75261 -14.57613 -14.33349 -14.08437 -13.87902 -13.50724 -12.89460 -12.47849 -12.39898 -12.02510 -11.93790 -11.84815 -11.64901 -11.28985 -11.05152 -11.03488 -10.96027 -10.56588 -10.26959 -9.99066 -9.73670 -9.26416 -8.92537 -8.64778 -8.43323 -8.16375 -7.97944 -6.03467 -4.07877 1.00137 1.18413 2.93928 3.26821 3.29600 3.37828 3.41199 3.81549 4.42080 4.45769 4.64016 4.77851 4.82370 4.90417 5.00442 5.16508 5.17931 5.23267 5.27911 5.36834 5.41540 5.43826 5.66752 5.79036 5.89441 5.97344 6.02686 6.12414 6.34780 6.37155 6.52481 6.56781 6.67929 6.74864 6.95128 7.17350 7.20468 7.52982 7.74123 7.91877 8.06624 8.38994 8.95305 9.57087 11.06216 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003855 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.175830 B = 7262.254958 C = 7978.996536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.045 4.045 6 C -0.117 4.117 7 C 0.060 3.940 8 N -0.481 5.481 9 C 0.009 3.991 10 C 0.041 3.959 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.005 4.005 20 C 0.135 3.865 21 F -0.116 7.116 22 C 0.024 3.976 23 O -0.318 6.318 24 C 0.033 3.967 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 -9.787 7.341 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.063 4.063 6 C -0.119 4.119 7 C -0.069 4.069 8 N -0.203 5.203 9 C -0.119 4.119 10 C 0.022 3.978 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.133 4.133 20 C 0.114 3.886 21 F -0.094 7.094 22 C -0.022 4.022 23 O -0.235 6.235 24 C -0.062 4.062 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.196 -10.442 6.950 20.485 hybrid contribution 1.439 0.705 0.543 1.692 sum -14.757 -9.737 7.493 19.202 Atomic orbital electron populations 1.23108 0.78364 1.04001 1.01500 1.86146 1.21232 1.25994 1.88457 1.18991 0.90622 0.85053 0.97054 1.21130 1.00193 0.91551 1.10039 1.20709 0.92800 0.97399 0.95422 1.19787 0.93755 0.94337 1.04020 1.21507 0.99221 0.92069 0.94072 1.68950 1.22279 1.08655 1.20426 1.24120 0.85761 1.01923 1.00133 1.20105 0.91895 0.90649 0.95187 1.21060 0.93092 1.22066 1.19184 0.92367 1.25019 0.99066 0.94882 0.94651 1.69977 1.29570 1.30635 1.22081 0.86564 0.83921 0.79479 0.78208 1.19714 1.20973 1.20931 1.24017 0.98677 0.90215 1.00411 1.17580 0.77836 0.92360 1.00783 1.91561 1.27866 1.96868 1.93090 1.17754 0.87225 0.85819 1.11395 1.86122 1.70121 1.37781 1.29440 1.23049 0.99762 0.98835 0.84505 0.92481 0.92489 0.88170 0.84564 0.84482 0.90429 0.92809 0.92554 0.92091 0.91861 0.92937 0.91885 0.92701 0.88756 0.93496 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.77 10.28 -34.27 -0.35 -4.12 16 3 C 0.13 1.78 6.70 -39.13 -0.26 1.52 16 4 C -0.21 -2.44 9.04 -39.45 -0.36 -2.80 16 5 C -0.04 -0.57 9.66 -39.58 -0.38 -0.95 16 6 C -0.12 -1.87 5.47 -104.55 -0.57 -2.44 16 7 C 0.06 1.02 4.72 -4.98 -0.02 1.00 16 8 N -0.48 -9.81 6.32 -246.07 -1.55 -11.37 16 9 C 0.01 0.22 5.87 -7.53 -0.04 0.18 16 10 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16 11 C -0.52 -14.16 8.83 -34.44 -0.30 -14.47 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 14 N -0.89 -25.85 13.26 55.43 0.74 -25.12 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.00 -0.10 7.25 -7.53 -0.05 -0.15 16 20 C 0.14 2.35 7.22 -39.33 -0.28 2.07 16 21 F -0.12 -2.27 14.90 2.25 0.03 -2.24 16 22 C 0.02 0.38 5.74 -39.09 -0.22 0.16 16 23 O -0.32 -5.22 10.07 -34.48 -0.35 -5.56 16 24 C 0.03 0.44 11.13 101.05 1.13 1.56 16 25 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 29 H 0.14 1.41 8.03 -52.49 -0.42 0.98 16 30 H 0.08 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 32 H 0.06 1.37 7.19 -51.93 -0.37 1.00 16 33 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.76 8.11 -51.93 -0.42 1.33 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -31.42 339.18 -7.84 -39.25 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.61 Total: -1.51 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.83 Total: -10.70 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.82 Total: -36.49 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.70 Total: -9.68 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.42 -7.84 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895254510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.822 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds