Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38628 * 120.06533 * 359.72300 * 3 2 1 5 5 C 1.38215 * 120.03883 * 179.70090 * 4 3 2 6 6 C 1.38265 * 120.16145 * 0.60138 * 5 4 3 7 7 C 1.50697 * 119.94018 * 179.70105 * 6 5 4 8 8 N 1.46894 * 109.46976 * 259.97489 * 7 6 5 9 9 C 1.47482 * 111.00251 * 265.97118 * 8 7 6 10 10 C 1.53513 * 87.93041 * 221.29914 * 9 8 7 11 11 C 1.50699 * 114.34347 * 139.68666 * 10 9 8 12 12 H 1.08000 * 120.00400 * 266.07772 * 11 10 9 13 13 C 1.37878 * 120.00280 * 86.06877 * 11 10 9 14 14 N 1.31513 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00250 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47287 * 120.00269 * 15 13 11 18 18 H 1.48496 * 109.47524 * 240.00189 * 15 13 11 19 19 C 1.47489 * 110.99892 * 169.99980 * 8 7 6 20 20 C 1.38412 * 120.11750 * 359.67776 * 6 5 4 21 21 F 1.35096 * 120.01820 * 180.02562 * 20 6 5 22 22 C 1.38755 * 119.96089 * 0.02562 * 20 6 5 23 23 O 1.36060 * 120.07749 * 179.97438 * 22 20 6 24 24 C 1.42898 * 116.99667 * 270.01923 * 23 22 20 25 25 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 26 26 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.97489 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91870 * 180.27958 * 5 4 3 30 30 H 1.09004 * 109.47073 * 19.98087 * 7 6 5 31 31 H 1.08999 * 109.47030 * 139.97772 * 7 6 5 32 32 H 1.08997 * 113.47356 * 336.06536 * 9 8 7 33 33 H 1.08993 * 113.47382 * 106.53057 * 9 8 7 34 34 H 1.09002 * 114.16988 * 272.37658 * 10 9 8 35 35 H 0.96999 * 120.00328 * 180.02562 * 14 13 11 36 36 H 1.09001 * 113.47337 * 253.47272 * 19 8 7 37 37 H 1.09002 * 113.47148 * 23.87782 * 19 8 7 38 38 H 1.08997 * 109.46969 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47394 * 300.00408 * 24 23 22 40 40 H 1.09002 * 109.47041 * 59.99953 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2926 2.3752 -0.0058 5 6 1.9205 3.6065 0.0004 6 6 3.3011 3.6822 -0.0001 7 6 3.9805 5.0273 0.0000 8 7 4.4159 5.3559 -1.3639 9 6 5.8160 4.9483 -1.5845 10 6 6.0239 6.2700 -2.3371 11 6 7.3426 6.9436 -2.0571 12 1 7.4111 7.6976 -1.2869 13 6 8.4618 6.5971 -2.7839 14 7 8.3785 5.6791 -3.7220 15 14 10.0965 7.4315 -2.4363 16 1 9.9249 8.4195 -1.3410 17 1 11.0965 6.4114 -2.0300 18 1 10.5680 8.1264 -3.6610 19 6 4.8688 6.7569 -1.4511 20 6 4.0602 2.5248 -0.0001 21 9 5.4090 2.6012 -0.0001 22 6 3.4350 1.2861 -0.0002 23 8 4.1788 0.1468 -0.0007 24 6 4.5333 -0.3958 -1.2742 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2140 2.3194 -0.0099 29 1 1.3313 4.5116 0.0005 30 1 3.2824 5.7870 0.3516 31 1 4.8470 4.9967 0.6605 32 1 6.3971 4.8761 -0.6651 33 1 5.9170 4.0672 -2.2181 34 1 5.7823 6.2218 -3.3989 35 1 9.1659 5.4351 -4.2331 36 1 4.1670 7.4085 -1.9717 37 1 5.1961 7.1675 -0.4959 38 1 5.1245 -1.3003 -1.1319 39 1 3.6280 -0.6368 -1.8313 40 1 5.1183 0.3363 -1.8310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895254510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = -73.708024 kcal Electronic energy + Delta-G solvation = -24054.737672 eV Core-core repulsion = 20364.469135 eV Total energy + Delta-G solvation = -3690.268537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.03220 -41.50910 -40.65934 -39.13358 -38.13585 -34.81635 -32.92215 -31.33803 -29.94860 -28.43628 -27.90430 -26.95003 -26.56180 -24.41491 -23.56622 -22.22830 -20.50851 -19.61345 -18.75417 -18.55066 -18.23094 -17.45770 -17.08276 -16.77832 -16.50280 -16.23603 -16.03871 -15.74070 -15.64305 -15.53240 -15.45230 -14.91860 -13.98598 -13.88152 -13.57591 -13.42762 -13.30523 -13.25030 -12.94807 -12.82732 -12.73315 -12.41615 -12.18224 -11.99193 -11.92761 -11.62259 -11.15776 -11.12929 -10.88283 -10.52017 -9.78535 -9.76387 -9.21137 -8.16486 -6.27943 -0.08895 0.08803 1.40368 1.41775 1.53715 2.08193 2.19790 2.41466 2.72286 3.12793 3.33600 3.37917 3.66943 3.78563 3.92443 4.07177 4.21820 4.29510 4.32209 4.33757 4.39579 4.43971 4.45673 4.58317 4.60141 4.68766 4.76366 4.77622 4.84611 4.90319 4.96153 5.05525 5.20698 5.27128 5.43193 5.54338 5.61089 5.83551 6.03483 6.27564 6.33469 6.46579 6.82130 7.40717 8.93658 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003855 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.175830 B = 7262.254958 C = 7978.996536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.132 3.868 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.137 4.137 7 C 0.062 3.938 8 N -0.475 5.475 9 C 0.026 3.974 10 C 0.020 3.980 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.278 1.278 19 C 0.013 3.987 20 C 0.100 3.900 21 F -0.143 7.143 22 C -0.001 4.001 23 O -0.338 6.338 24 C 0.032 3.968 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.180 0.820 29 H 0.173 0.827 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.685 -9.200 8.474 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.085 3.915 4 C -0.211 4.211 5 C -0.052 4.052 6 C -0.138 4.138 7 C -0.066 4.066 8 N -0.197 5.197 9 C -0.104 4.104 10 C 0.001 3.999 11 C -0.567 4.567 12 H 0.080 0.920 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.784 3.216 16 H -0.185 1.185 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.115 4.115 20 C 0.079 3.921 21 F -0.121 7.121 22 C -0.047 4.047 23 O -0.255 6.255 24 C -0.062 4.062 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.138 0.862 28 H 0.197 0.803 29 H 0.190 0.810 30 H 0.131 0.869 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.956 -9.851 8.094 22.844 hybrid contribution 2.119 0.406 0.196 2.166 sum -16.837 -9.445 8.290 21.010 Atomic orbital electron populations 1.23512 0.75539 1.06031 1.03029 1.86138 1.24101 1.25415 1.88006 1.19088 0.89851 0.86517 0.96000 1.21572 1.02096 0.90081 1.07356 1.21108 0.91384 0.99318 0.93345 1.19829 0.95167 0.92920 1.05923 1.21534 0.99544 0.94049 0.91496 1.68851 1.19604 1.07955 1.23312 1.23745 0.88141 0.99781 0.98692 1.20071 0.93259 0.92392 0.94223 1.21424 0.94203 1.22041 1.19076 0.91989 1.25877 1.02841 0.95523 0.94500 1.70112 1.30588 1.32234 1.23283 0.85494 0.79230 0.78493 0.78392 1.18522 1.20946 1.20314 1.23837 0.97060 0.90824 0.99817 1.18029 0.77006 0.93892 1.03146 1.91479 1.29926 1.97071 1.93671 1.18027 0.88604 0.85299 1.12733 1.86070 1.70623 1.38045 1.30793 1.23171 1.00323 0.99001 0.83722 0.90978 0.90715 0.86187 0.80259 0.80994 0.86892 0.94363 0.93841 0.95103 0.95159 0.92921 0.89771 0.91666 0.86382 0.92395 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -7.23 10.28 -79.59 -0.82 -8.05 16 3 C 0.13 3.40 6.70 22.56 0.15 3.55 16 4 C -0.19 -3.73 9.04 22.36 0.20 -3.53 16 5 C -0.03 -0.73 9.66 22.27 0.22 -0.52 16 6 C -0.14 -4.23 5.47 -19.82 -0.11 -4.34 16 7 C 0.06 2.04 4.72 85.56 0.40 2.45 16 8 N -0.48 -19.32 6.32 -932.42 -5.89 -25.21 16 9 C 0.03 1.28 5.87 83.58 0.49 1.77 16 10 C 0.02 1.03 3.76 -11.20 -0.04 0.99 16 11 C -0.53 -29.61 8.83 25.60 0.23 -29.38 16 12 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 13 C 0.01 0.67 5.46 84.66 0.46 1.13 16 14 N -0.92 -55.86 13.26 21.45 0.28 -55.58 16 15 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.01 0.53 7.25 83.58 0.61 1.14 16 20 C 0.10 3.59 7.22 22.44 0.16 3.75 16 21 F -0.14 -6.06 14.90 44.97 0.67 -5.39 16 22 C 0.00 -0.04 5.74 22.59 0.13 0.09 16 23 O -0.34 -11.48 10.07 -80.33 -0.81 -12.28 16 24 C 0.03 0.88 11.13 113.37 1.26 2.14 16 25 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 26 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 27 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.18 1.89 6.30 -2.91 -0.02 1.87 16 29 H 0.17 2.57 8.03 -2.91 -0.02 2.55 16 30 H 0.11 2.92 7.94 -2.38 -0.02 2.90 16 31 H 0.04 1.39 7.10 -2.39 -0.02 1.37 16 32 H 0.04 2.23 7.19 -2.39 -0.02 2.22 16 33 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.03 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.07 2.55 7.87 -2.39 -0.02 2.53 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.12 339.18 1.78 -70.35 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.04 Total: 9.39 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 5.27 Total: -19.52 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -5.60 Total: -80.78 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.63 Total: -20.33 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.67 Total: -5.39 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.12 1.78 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895254510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.362 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds