Wall clock time and date at job start Tue Mar 31 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 117.00181 * 2 1 4 4 O 1.21468 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.47740 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.13462 * 359.97438 * 5 3 2 7 7 C 1.37930 * 119.89716 * 180.02562 * 6 5 3 8 8 C 1.38352 * 120.17586 * 359.72666 * 7 6 5 9 9 C 1.50699 * 119.85814 * 180.27641 * 8 7 6 10 10 N 1.46899 * 109.47249 * 260.27445 * 9 8 7 11 11 C 1.46900 * 111.00113 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47156 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47330 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99620 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00214 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99688 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99896 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46971 * 90.00172 * 18 16 14 20 20 H 1.48502 * 109.47024 * 210.00001 * 18 16 14 21 21 H 1.48495 * 109.47578 * 330.00366 * 18 16 14 22 22 C 1.38559 * 120.28139 * 0.54742 * 8 7 6 23 23 F 1.35104 * 119.95081 * 179.72260 * 22 8 7 24 24 C 1.38198 * 120.09645 * 359.45504 * 22 8 7 25 25 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46762 * 300.00389 * 1 2 3 27 27 H 1.09002 * 109.47008 * 59.99401 * 1 2 3 28 28 H 1.07996 * 120.04941 * 0.04185 * 6 5 3 29 29 H 1.07997 * 119.91112 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47176 * 20.27641 * 9 8 7 31 31 H 1.09003 * 109.47484 * 140.27342 * 9 8 7 32 32 H 1.00902 * 111.00008 * 303.95490 * 10 9 8 33 33 H 1.08995 * 109.47628 * 300.00058 * 11 10 9 34 34 H 1.08999 * 109.46896 * 60.00444 * 11 10 9 35 35 H 1.09001 * 109.47139 * 300.00112 * 12 11 10 36 36 H 1.08998 * 109.46679 * 59.99978 * 12 11 10 37 37 H 1.08998 * 109.47539 * 300.00790 * 13 12 11 38 38 H 1.09004 * 109.47191 * 59.99978 * 13 12 11 39 39 H 0.97008 * 119.99780 * 179.97438 * 17 16 14 40 40 H 1.07991 * 120.08934 * 180.25118 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3023 0.1080 -0.0006 7 6 5.6794 0.1859 -0.0006 8 6 6.3062 1.4193 -0.0063 9 6 7.8112 1.4960 -0.0125 10 7 8.2939 1.7581 1.3499 11 6 9.7603 1.8389 1.3825 12 6 10.2242 2.1128 2.8146 13 6 11.7515 2.1964 2.8487 14 6 12.2085 2.4668 4.2590 15 1 11.4822 2.5685 5.0518 16 6 13.5538 2.5845 4.5373 17 7 14.4381 2.4612 3.5717 18 14 14.1201 2.9190 6.2856 19 1 14.3410 1.6301 6.9895 20 1 15.3887 3.6905 6.2559 21 1 13.0811 3.7021 7.0013 22 6 5.5561 2.5843 -0.0006 23 9 6.1751 3.7851 -0.0006 24 6 4.1756 2.5196 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.8150 -0.8558 -0.0008 29 1 6.2699 -0.7183 -0.0010 30 1 8.2217 0.5508 -0.3679 31 1 8.1313 2.3021 -0.6727 32 1 7.8767 2.5962 1.7263 33 1 10.1840 0.8960 1.0371 34 1 10.0941 2.6473 0.7320 35 1 9.8006 3.0560 3.1596 36 1 9.8903 1.3048 3.4654 37 1 12.1749 1.2531 2.5037 38 1 12.0858 3.0042 2.1976 39 1 15.3846 2.5444 3.7674 40 1 3.5911 3.4277 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921685169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:04 Heat of formation + Delta-G solvation = -119.946113 kcal Electronic energy + Delta-G solvation = -22154.535379 eV Core-core repulsion = 18462.261808 eV Total energy + Delta-G solvation = -3692.273571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.18449 -40.96075 -39.24050 -36.92222 -36.43561 -33.83976 -32.39218 -31.08757 -30.66804 -28.40974 -26.93610 -25.18008 -23.35311 -22.87780 -22.10481 -21.22814 -20.11833 -18.76304 -17.64273 -16.79869 -16.75527 -16.35782 -16.29855 -15.92562 -15.88681 -15.31355 -14.62486 -14.35442 -14.21858 -14.09627 -13.83665 -13.75442 -13.34910 -12.85322 -12.56186 -12.49143 -12.24909 -12.11234 -11.59484 -11.48818 -11.40791 -11.25337 -10.96323 -10.83382 -10.58773 -10.51115 -9.70673 -9.54519 -9.32028 -9.13184 -9.02919 -8.33496 -8.28645 -5.98478 -4.00426 0.14221 0.78590 2.04629 2.17272 3.19705 3.33502 3.39474 3.43372 3.88016 4.13475 4.29075 4.35316 4.47850 4.59047 4.63207 4.68002 4.75729 4.79962 5.05995 5.21151 5.28182 5.37386 5.49009 5.54580 5.63995 5.74127 5.76573 5.84085 5.89432 6.00081 6.28894 6.36937 6.68105 6.71597 7.12327 7.21755 7.27325 7.48886 7.69384 7.83828 8.01798 8.45072 9.06656 9.63482 11.12930 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.002172 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.651862 B =12888.912647 C =13019.129158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.503 6.503 5 C -0.107 4.107 6 C -0.070 4.070 7 C -0.086 4.086 8 C -0.069 4.069 9 C 0.089 3.911 10 N -0.684 5.684 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.094 3.906 23 F -0.130 7.130 24 C -0.090 4.090 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.340 0.660 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.993 -6.244 -11.538 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.357 3.643 4 O -0.391 6.391 5 C -0.108 4.108 6 C -0.089 4.089 7 C -0.105 4.105 8 C -0.071 4.071 9 C -0.040 4.040 10 N -0.315 5.315 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.074 3.926 23 F -0.108 7.108 24 C -0.109 4.109 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -26.011 -6.562 -11.392 29.145 hybrid contribution 0.430 1.388 0.526 1.546 sum -25.581 -5.174 -10.866 28.271 Atomic orbital electron populations 1.23327 0.75562 1.04005 1.02808 1.86533 1.23850 1.32318 1.84227 1.21064 0.88890 0.81583 0.72756 1.90854 1.66739 1.36033 1.45524 1.18764 0.89213 0.94114 1.08709 1.21523 0.93737 0.98116 0.95477 1.20996 0.93969 0.97205 0.98298 1.20321 0.96953 0.92108 0.97695 1.20943 0.88480 1.02596 0.91993 1.60683 1.08729 1.43655 1.18455 1.22177 0.84781 1.00396 0.99577 1.21632 0.99675 1.00343 0.92878 1.19068 0.88331 0.97130 0.97036 1.21254 0.91773 1.48452 0.94216 0.92657 1.25035 0.96956 0.95495 0.97103 1.69969 1.01341 1.50546 1.31734 0.86585 0.78097 0.78291 0.84977 1.20658 1.21265 1.19892 1.17319 0.90070 0.80852 1.04371 1.91548 1.82705 1.42709 1.93865 1.21123 0.92698 0.98529 0.98516 0.87720 0.91630 0.91699 0.83644 0.83628 0.89146 0.93607 0.84233 0.91163 0.95443 0.93581 0.92463 0.96532 0.96758 0.93050 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.91 9.82 -40.50 -0.40 -3.30 16 3 C 0.51 5.21 7.90 34.61 0.27 5.49 16 4 O -0.50 -6.31 16.14 -19.24 -0.31 -6.62 16 5 C -0.11 -1.02 5.87 -104.99 -0.62 -1.64 16 6 C -0.07 -0.56 9.62 -39.17 -0.38 -0.94 16 7 C -0.09 -0.73 9.65 -39.65 -0.38 -1.11 16 8 C -0.07 -0.72 5.41 -104.46 -0.56 -1.29 16 9 C 0.09 1.02 5.52 -4.98 -0.03 1.00 16 10 N -0.68 -9.81 6.49 -115.05 -0.75 -10.56 16 11 C 0.06 0.99 5.69 -3.82 -0.02 0.97 16 12 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.09 1.04 7.23 -39.48 -0.29 0.75 16 23 F -0.13 -1.60 16.64 2.25 0.04 -1.57 16 24 C -0.09 -0.93 9.57 -39.10 -0.37 -1.30 16 25 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.15 0.85 7.61 -52.49 -0.40 0.45 16 29 H 0.15 0.96 8.03 -52.49 -0.42 0.54 16 30 H 0.09 0.93 8.00 -51.93 -0.42 0.52 16 31 H 0.05 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.34 4.90 8.72 -39.29 -0.34 4.56 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.15 1.49 7.65 -52.49 -0.40 1.08 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -32.40 352.46 -8.13 -40.53 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.74 Total: -1.83 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.00 Total: -12.42 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.01 Total: -36.96 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.71 Total: -9.92 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.40 -8.13 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921685169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.412 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds