Wall clock time and date at job start Tue Mar 31 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 117.00181 * 2 1 4 4 O 1.21468 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.47740 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.13462 * 359.97438 * 5 3 2 7 7 C 1.37930 * 119.89716 * 180.02562 * 6 5 3 8 8 C 1.38352 * 120.17586 * 359.72666 * 7 6 5 9 9 C 1.50699 * 119.85814 * 180.27641 * 8 7 6 10 10 N 1.46899 * 109.47249 * 260.27445 * 9 8 7 11 11 C 1.46900 * 111.00113 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47156 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47330 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99620 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00214 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99688 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99896 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46971 * 90.00172 * 18 16 14 20 20 H 1.48502 * 109.47024 * 210.00001 * 18 16 14 21 21 H 1.48495 * 109.47578 * 330.00366 * 18 16 14 22 22 C 1.38559 * 120.28139 * 0.54742 * 8 7 6 23 23 F 1.35104 * 119.95081 * 179.72260 * 22 8 7 24 24 C 1.38198 * 120.09645 * 359.45504 * 22 8 7 25 25 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46762 * 300.00389 * 1 2 3 27 27 H 1.09002 * 109.47008 * 59.99401 * 1 2 3 28 28 H 1.07996 * 120.04941 * 0.04185 * 6 5 3 29 29 H 1.07997 * 119.91112 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.47176 * 20.27641 * 9 8 7 31 31 H 1.09003 * 109.47484 * 140.27342 * 9 8 7 32 32 H 1.00902 * 111.00008 * 303.95490 * 10 9 8 33 33 H 1.08995 * 109.47628 * 300.00058 * 11 10 9 34 34 H 1.08999 * 109.46896 * 60.00444 * 11 10 9 35 35 H 1.09001 * 109.47139 * 300.00112 * 12 11 10 36 36 H 1.08998 * 109.46679 * 59.99978 * 12 11 10 37 37 H 1.08998 * 109.47539 * 300.00790 * 13 12 11 38 38 H 1.09004 * 109.47191 * 59.99978 * 13 12 11 39 39 H 0.97008 * 119.99780 * 179.97438 * 17 16 14 40 40 H 1.07991 * 120.08934 * 180.25118 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3023 0.1080 -0.0006 7 6 5.6794 0.1859 -0.0006 8 6 6.3062 1.4193 -0.0063 9 6 7.8112 1.4960 -0.0125 10 7 8.2939 1.7581 1.3499 11 6 9.7603 1.8389 1.3825 12 6 10.2242 2.1128 2.8146 13 6 11.7515 2.1964 2.8487 14 6 12.2085 2.4668 4.2590 15 1 11.4822 2.5685 5.0518 16 6 13.5538 2.5845 4.5373 17 7 14.4381 2.4612 3.5717 18 14 14.1201 2.9190 6.2856 19 1 14.3410 1.6301 6.9895 20 1 15.3887 3.6905 6.2559 21 1 13.0811 3.7021 7.0013 22 6 5.5561 2.5843 -0.0006 23 9 6.1751 3.7851 -0.0006 24 6 4.1756 2.5196 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.8150 -0.8558 -0.0008 29 1 6.2699 -0.7183 -0.0010 30 1 8.2217 0.5508 -0.3679 31 1 8.1313 2.3021 -0.6727 32 1 7.8767 2.5962 1.7263 33 1 10.1840 0.8960 1.0371 34 1 10.0941 2.6473 0.7320 35 1 9.8006 3.0560 3.1596 36 1 9.8903 1.3048 3.4654 37 1 12.1749 1.2531 2.5037 38 1 12.0858 3.0042 2.1976 39 1 15.3846 2.5444 3.7674 40 1 3.5911 3.4277 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921685169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:03 Heat of formation + Delta-G solvation = -139.248361 kcal Electronic energy + Delta-G solvation = -22155.372388 eV Core-core repulsion = 18462.261808 eV Total energy + Delta-G solvation = -3693.110579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.06740 -41.69700 -39.99887 -37.83172 -37.51234 -35.60974 -33.87325 -32.16050 -31.76455 -29.23383 -28.19341 -26.50753 -24.34468 -24.03003 -23.25026 -22.12100 -21.73808 -19.51159 -18.49568 -18.38857 -17.56673 -17.48313 -17.08514 -16.87880 -16.83705 -16.54371 -16.41677 -15.53709 -15.26120 -14.99907 -14.72581 -14.48016 -14.38535 -14.29058 -13.85551 -13.48538 -13.26134 -13.17842 -13.00815 -12.83390 -12.63408 -12.46698 -12.30381 -12.24141 -11.85857 -11.75248 -11.53219 -11.39490 -11.12645 -10.54529 -10.23061 -9.90821 -9.44440 -8.19706 -6.30365 -0.62005 0.05346 1.27918 1.40494 1.41847 1.52837 1.53030 2.41056 2.45394 3.11232 3.13352 3.23506 3.49103 3.58284 3.70804 3.91606 4.04629 4.24221 4.28786 4.32316 4.34248 4.49511 4.50902 4.65189 4.71827 4.73160 4.83615 4.95765 4.98504 5.05606 5.09566 5.20231 5.23213 5.26408 5.52351 5.63699 5.75738 5.86582 5.94747 6.27047 6.30193 6.54649 6.86413 7.38622 8.92028 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.002172 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.651862 B =12888.912647 C =13019.129158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.113 4.113 6 C -0.055 4.055 7 C -0.079 4.079 8 C -0.076 4.076 9 C 0.090 3.910 10 N -0.684 5.684 11 C 0.072 3.928 12 C -0.094 4.094 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.078 3.922 23 F -0.143 7.143 24 C -0.097 4.097 25 H 0.138 0.862 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.339 0.661 33 H 0.074 0.926 34 H 0.023 0.977 35 H 0.045 0.955 36 H 0.055 0.945 37 H -0.004 1.004 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.119 -7.860 -11.036 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.361 3.639 4 O -0.426 6.426 5 C -0.115 4.115 6 C -0.073 4.073 7 C -0.097 4.097 8 C -0.078 4.078 9 C -0.038 4.038 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.132 4.132 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.189 1.189 22 C 0.058 3.942 23 F -0.122 7.122 24 C -0.116 4.116 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.191 0.809 29 H 0.189 0.811 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.161 -8.198 -10.898 30.392 hybrid contribution 0.695 1.832 0.322 1.986 sum -26.466 -6.366 -10.576 29.203 Atomic orbital electron populations 1.23642 0.73927 1.06168 1.02712 1.86522 1.25429 1.31024 1.83598 1.21175 0.89061 0.81723 0.71967 1.90840 1.67410 1.37145 1.47165 1.18874 0.89251 0.94451 1.08915 1.21806 0.93466 0.98555 0.93428 1.21294 0.94337 0.97200 0.96868 1.20302 0.96155 0.92677 0.98644 1.20989 0.89385 1.03293 0.90171 1.60615 1.06777 1.43519 1.20516 1.21878 0.86663 1.00413 0.96716 1.21383 0.95915 1.00293 0.95580 1.18974 0.91908 0.94958 0.95443 1.21701 0.92366 1.48608 0.95461 0.92361 1.25990 0.97116 0.95083 1.01794 1.70095 1.01770 1.51286 1.34121 0.85443 0.77707 0.78520 0.79347 1.19634 1.20715 1.18934 1.17484 0.90406 0.80713 1.05591 1.91509 1.82953 1.43597 1.94139 1.21125 0.92488 0.99002 0.98970 0.84423 0.91903 0.91722 0.80893 0.81082 0.87394 0.94001 0.84371 0.90735 0.95844 0.93618 0.92583 0.98590 0.99127 0.92777 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -5.05 9.82 -56.14 -0.55 -5.61 16 3 C 0.51 9.96 7.90 70.33 0.56 10.51 16 4 O -0.53 -13.39 16.14 19.94 0.32 -13.07 16 5 C -0.11 -2.03 5.87 -20.10 -0.12 -2.15 16 6 C -0.05 -0.71 9.62 22.54 0.22 -0.49 16 7 C -0.08 -1.10 9.65 22.22 0.21 -0.88 16 8 C -0.08 -1.47 5.41 -19.76 -0.11 -1.58 16 9 C 0.09 1.94 5.52 85.56 0.47 2.41 16 10 N -0.68 -18.81 6.49 -517.92 -3.36 -22.17 16 11 C 0.07 2.40 5.69 86.31 0.49 2.89 16 12 C -0.09 -3.89 5.41 30.60 0.17 -3.72 16 13 C 0.02 1.32 4.97 29.85 0.15 1.47 16 14 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 18 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.08 1.69 7.23 22.34 0.16 1.86 16 23 F -0.14 -3.61 16.64 44.97 0.75 -2.86 16 24 C -0.10 -1.99 9.57 22.58 0.22 -1.77 16 25 H 0.14 0.29 8.14 -2.39 -0.02 0.28 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.17 1.31 7.61 -2.91 -0.02 1.29 16 29 H 0.17 1.53 8.03 -2.91 -0.02 1.51 16 30 H 0.11 1.95 8.00 -2.38 -0.02 1.93 16 31 H 0.04 0.95 7.94 -2.39 -0.02 0.93 16 32 H 0.34 9.54 8.72 -89.69 -0.78 8.75 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 40 H 0.14 3.01 7.65 -2.92 -0.02 2.99 16 Total: -1.00 -70.28 352.46 4.04 -66.23 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.27 Total: 8.41 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.31 Total: -20.88 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.08 Total: -79.01 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.23 Total: -18.67 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.75 Total: -2.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.28 4.04 -66.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921685169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.017 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds