Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00146 * 2 1 4 4 H 1.08997 * 110.78685 * 328.20783 * 3 2 1 5 5 C 1.54935 * 110.72458 * 204.95350 * 3 2 1 6 6 N 1.48539 * 103.22792 * 204.23407 * 5 3 2 7 7 C 1.46892 * 111.00182 * 159.72202 * 6 5 3 8 8 C 1.50705 * 109.47233 * 312.47733 * 7 6 5 9 9 C 1.38291 * 119.93243 * 89.99811 * 8 7 6 10 10 C 1.38102 * 120.07287 * 180.02562 * 9 8 7 11 11 C 1.38885 * 119.92439 * 0.02562 * 10 9 8 12 12 O 1.35749 * 120.06407 * 179.97438 * 11 10 9 13 13 C 1.34824 * 117.00532 * 5.53097 * 12 11 10 14 14 H 1.08000 * 119.99528 * 354.94272 * 13 12 11 15 15 C 1.38650 * 120.00451 * 174.94170 * 13 12 11 16 16 N 1.31558 * 119.99986 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47246 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47120 * 60.00042 * 17 15 13 20 20 H 1.48505 * 109.46916 * 299.99937 * 17 15 13 21 21 C 1.38878 * 119.86442 * 0.25280 * 11 10 9 22 22 C 1.38094 * 119.93045 * 359.49209 * 21 11 10 23 23 C 1.47899 * 105.81964 * 39.20568 * 6 5 3 24 24 C 1.53994 * 107.06157 * 334.67286 * 23 6 5 25 25 H 1.09004 * 110.31052 * 242.21296 * 24 23 6 26 26 F 1.39896 * 110.31003 * 120.14075 * 24 23 6 27 27 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47324 * 299.99919 * 1 2 3 29 29 H 1.09003 * 109.47021 * 59.99707 * 1 2 3 30 30 H 1.08992 * 110.66783 * 85.79670 * 5 3 2 31 31 H 1.09006 * 110.66455 * 322.66171 * 5 3 2 32 32 H 1.08998 * 109.47231 * 192.47659 * 7 6 5 33 33 H 1.08997 * 109.47246 * 72.47659 * 7 6 5 34 34 H 1.07999 * 119.96624 * 0.04379 * 9 8 7 35 35 H 1.08001 * 120.03888 * 180.02562 * 10 9 8 36 36 H 0.96997 * 120.00087 * 0.02562 * 16 15 13 37 37 H 1.07997 * 120.03571 * 179.72341 * 21 11 10 38 38 H 1.07998 * 119.96774 * 180.27428 * 22 21 11 39 39 H 1.09003 * 109.92026 * 94.02443 * 23 6 5 40 40 H 1.08998 * 109.91951 * 215.32054 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3764 2.0111 -0.5369 5 6 3.4335 1.2719 -0.6113 6 7 4.0896 2.4614 -0.0105 7 6 5.5525 2.3457 -0.0774 8 6 5.9708 0.9793 0.4013 9 6 6.0780 -0.0646 -0.4994 10 6 6.4606 -1.3180 -0.0637 11 6 6.7373 -1.5296 1.2807 12 8 7.1131 -2.7606 1.7121 13 6 7.3099 -3.7055 0.7708 14 1 7.0893 -3.4906 -0.2644 15 6 7.7955 -4.9531 1.1315 16 7 8.0637 -5.2151 2.3925 17 14 8.0688 -6.2621 -0.1729 18 1 8.5885 -7.4974 0.4667 19 1 9.0522 -5.7691 -1.1703 20 1 6.7822 -6.5604 -0.8518 21 6 6.6232 -0.4806 2.1837 22 6 6.2452 0.7716 1.7409 23 6 3.6256 2.5119 1.3929 24 6 2.2663 1.7902 1.4456 25 1 1.4832 2.4806 1.7589 26 9 2.3291 0.6995 2.3195 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.3884 1.3645 -1.6964 31 1 3.9545 0.3587 -0.3233 32 1 6.0066 3.1075 0.5562 33 1 5.8813 2.4863 -1.1071 34 1 5.8625 0.1006 -1.5447 35 1 6.5445 -2.1327 -0.7677 36 1 7.9215 -4.5356 3.0700 37 1 6.8333 -0.6432 3.2305 38 1 6.1606 1.5888 2.4419 39 1 4.3412 2.0036 2.0392 40 1 3.5079 3.5487 1.7080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -84.202189 kcal Electronic energy + Delta-G solvation = -24316.007113 eV Core-core repulsion = 20625.283515 eV Total energy + Delta-G solvation = -3690.723598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.51948 -39.84327 -38.69265 -37.47301 -36.00866 -32.47821 -31.56710 -30.46142 -28.81968 -28.49965 -26.44776 -25.30502 -24.46668 -22.13551 -21.59614 -20.89755 -20.28243 -18.41477 -17.43084 -16.96659 -16.76418 -15.66091 -15.40382 -15.30401 -14.99070 -14.74780 -14.41307 -14.08151 -13.87924 -13.79194 -13.69582 -13.62313 -13.25783 -12.86493 -12.70181 -12.05497 -11.73270 -11.52426 -11.41133 -11.24261 -11.22126 -11.08792 -10.99260 -10.75186 -10.64419 -10.31184 -10.29014 -9.62636 -9.42852 -8.77753 -8.50705 -8.24080 -7.29246 -6.78542 -4.07345 2.10867 2.16481 3.23687 3.28369 3.41683 3.45216 4.08241 4.11275 4.22568 4.26820 4.50748 4.69255 4.81357 4.98175 5.04654 5.16678 5.16926 5.20738 5.24187 5.29092 5.40568 5.55139 5.59932 5.61176 5.67950 5.76759 5.89689 5.95085 6.00973 6.11852 6.27463 6.57373 6.62934 6.79076 6.86150 7.03401 7.07843 7.19168 7.27496 7.54421 7.68187 8.38313 8.90331 9.58599 10.65381 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004299 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.840781 B = 6511.588741 C = 7081.531642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.060 3.940 4 H 0.086 0.914 5 C 0.025 3.975 6 N -0.503 5.503 7 C 0.100 3.900 8 C -0.226 4.226 9 C -0.056 4.056 10 C -0.229 4.229 11 C 0.162 3.838 12 O -0.200 6.200 13 C -0.472 4.472 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.879 5.879 17 Si 1.096 2.904 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.194 4.194 22 C -0.062 4.062 23 C 0.000 4.000 24 C 0.057 3.943 25 H 0.088 0.912 26 F -0.194 7.194 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.282 0.718 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 15.350 -5.568 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.001 3.999 4 H 0.104 0.896 5 C -0.102 4.102 6 N -0.227 5.227 7 C -0.027 4.027 8 C -0.228 4.228 9 C -0.075 4.075 10 C -0.248 4.248 11 C 0.108 3.892 12 O -0.104 6.104 13 C -0.547 4.547 14 H 0.101 0.899 15 C -0.195 4.195 16 N -0.511 5.511 17 Si 0.920 3.080 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.213 4.213 22 C -0.081 4.081 23 C -0.129 4.129 24 C 0.020 3.980 25 H 0.106 0.894 26 F -0.175 7.175 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.014 13.927 -5.808 18.682 hybrid contribution -0.578 1.089 0.685 1.410 sum -11.592 15.017 -5.123 19.650 Atomic orbital electron populations 1.22822 0.81040 1.03134 0.99655 1.88047 1.19634 1.25771 1.94569 1.23617 0.96205 0.85864 0.94248 0.89623 1.23454 0.91829 0.95212 0.99711 1.65263 1.07333 1.37107 1.12991 1.21086 0.86428 0.93520 1.01702 1.19813 1.12076 0.96593 0.94293 1.20610 0.96688 0.92335 0.97904 1.21165 1.09352 0.98085 0.96178 1.19240 0.92121 0.85678 0.92162 1.83662 1.74545 1.15676 1.36493 1.22214 1.49171 0.93488 0.89861 0.89852 1.26557 0.94321 0.97073 1.01547 1.70571 1.41864 1.37715 1.00943 0.83112 0.77079 0.74921 0.72935 1.19736 1.20707 1.20680 1.20170 1.10336 0.91853 0.98943 1.20476 0.97625 0.95573 0.94458 1.23602 0.95392 1.01313 0.92549 1.22874 0.99169 0.86081 0.89861 0.89381 1.92877 1.97520 1.56716 1.70361 0.89304 0.94163 0.93986 0.89318 0.89454 0.90493 0.90097 0.87438 0.85408 0.90787 0.86742 0.87256 0.90368 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.88 101.05 1.10 1.41 16 2 O -0.36 -5.27 9.88 -35.23 -0.35 -5.61 16 3 C 0.06 0.75 3.47 -24.87 -0.09 0.66 16 4 H 0.09 0.84 7.89 -51.93 -0.41 0.43 16 5 C 0.03 0.35 5.78 -1.90 -0.01 0.34 16 6 N -0.50 -6.31 5.54 -231.90 -1.28 -7.60 16 7 C 0.10 1.30 5.69 -4.98 -0.03 1.27 16 8 C -0.23 -3.76 3.96 -104.57 -0.41 -4.17 16 9 C -0.06 -1.03 7.48 -39.61 -0.30 -1.33 16 10 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 11 C 0.16 4.00 6.65 -39.10 -0.26 3.74 16 12 O -0.20 -5.75 9.16 0.07 0.00 -5.75 16 13 C -0.47 -13.48 9.49 30.88 0.29 -13.18 16 14 H 0.08 2.24 5.20 -52.49 -0.27 1.97 16 15 C 0.01 0.30 5.49 -17.52 -0.10 0.20 16 16 N -0.88 -26.56 13.70 55.48 0.76 -25.80 16 17 Si 1.10 23.95 29.92 -169.99 -5.09 18.86 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16 22 C -0.06 -1.12 8.18 -39.61 -0.32 -1.44 16 23 C 0.00 0.00 6.31 -2.76 -0.02 -0.02 16 24 C 0.06 0.72 4.72 -25.37 -0.12 0.60 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 26 F -0.19 -3.23 16.47 2.25 0.04 -3.19 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.49 4.85 -51.93 -0.25 1.24 16 32 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.11 1.69 8.05 -52.49 -0.42 1.26 16 35 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 36 H 0.28 8.73 7.97 -40.82 -0.33 8.41 16 37 H 0.11 2.38 8.06 -52.49 -0.42 1.95 16 38 H 0.11 1.65 7.16 -52.49 -0.38 1.27 16 39 H 0.08 1.10 4.73 -51.93 -0.25 0.85 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -32.35 327.73 -7.19 -39.54 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.19 Total: 6.55 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.02 Total: -21.93 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.52 Total: -33.40 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.35 Total: -11.37 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.35 -7.19 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.667 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds