Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00146 * 2 1 4 4 H 1.08997 * 110.78685 * 328.20783 * 3 2 1 5 5 C 1.54935 * 110.72458 * 204.95350 * 3 2 1 6 6 N 1.48539 * 103.22792 * 204.23407 * 5 3 2 7 7 C 1.46892 * 111.00182 * 159.72202 * 6 5 3 8 8 C 1.50705 * 109.47233 * 312.47733 * 7 6 5 9 9 C 1.38291 * 119.93243 * 89.99811 * 8 7 6 10 10 C 1.38102 * 120.07287 * 180.02562 * 9 8 7 11 11 C 1.38885 * 119.92439 * 0.02562 * 10 9 8 12 12 O 1.35749 * 120.06407 * 179.97438 * 11 10 9 13 13 C 1.34824 * 117.00532 * 5.53097 * 12 11 10 14 14 H 1.08000 * 119.99528 * 354.94272 * 13 12 11 15 15 C 1.38650 * 120.00451 * 174.94170 * 13 12 11 16 16 N 1.31558 * 119.99986 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47246 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47120 * 60.00042 * 17 15 13 20 20 H 1.48505 * 109.46916 * 299.99937 * 17 15 13 21 21 C 1.38878 * 119.86442 * 0.25280 * 11 10 9 22 22 C 1.38094 * 119.93045 * 359.49209 * 21 11 10 23 23 C 1.47899 * 105.81964 * 39.20568 * 6 5 3 24 24 C 1.53994 * 107.06157 * 334.67286 * 23 6 5 25 25 H 1.09004 * 110.31052 * 242.21296 * 24 23 6 26 26 F 1.39896 * 110.31003 * 120.14075 * 24 23 6 27 27 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47324 * 299.99919 * 1 2 3 29 29 H 1.09003 * 109.47021 * 59.99707 * 1 2 3 30 30 H 1.08992 * 110.66783 * 85.79670 * 5 3 2 31 31 H 1.09006 * 110.66455 * 322.66171 * 5 3 2 32 32 H 1.08998 * 109.47231 * 192.47659 * 7 6 5 33 33 H 1.08997 * 109.47246 * 72.47659 * 7 6 5 34 34 H 1.07999 * 119.96624 * 0.04379 * 9 8 7 35 35 H 1.08001 * 120.03888 * 180.02562 * 10 9 8 36 36 H 0.96997 * 120.00087 * 0.02562 * 16 15 13 37 37 H 1.07997 * 120.03571 * 179.72341 * 21 11 10 38 38 H 1.07998 * 119.96774 * 180.27428 * 22 21 11 39 39 H 1.09003 * 109.92026 * 94.02443 * 23 6 5 40 40 H 1.08998 * 109.91951 * 215.32054 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3764 2.0111 -0.5369 5 6 3.4335 1.2719 -0.6113 6 7 4.0896 2.4614 -0.0105 7 6 5.5525 2.3457 -0.0774 8 6 5.9708 0.9793 0.4013 9 6 6.0780 -0.0646 -0.4994 10 6 6.4606 -1.3180 -0.0637 11 6 6.7373 -1.5296 1.2807 12 8 7.1131 -2.7606 1.7121 13 6 7.3099 -3.7055 0.7708 14 1 7.0893 -3.4906 -0.2644 15 6 7.7955 -4.9531 1.1315 16 7 8.0637 -5.2151 2.3925 17 14 8.0688 -6.2621 -0.1729 18 1 8.5885 -7.4974 0.4667 19 1 9.0522 -5.7691 -1.1703 20 1 6.7822 -6.5604 -0.8518 21 6 6.6232 -0.4806 2.1837 22 6 6.2452 0.7716 1.7409 23 6 3.6256 2.5119 1.3929 24 6 2.2663 1.7902 1.4456 25 1 1.4832 2.4806 1.7589 26 9 2.3291 0.6995 2.3195 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.3884 1.3645 -1.6964 31 1 3.9545 0.3587 -0.3233 32 1 6.0066 3.1075 0.5562 33 1 5.8813 2.4863 -1.1071 34 1 5.8625 0.1006 -1.5447 35 1 6.5445 -2.1327 -0.7677 36 1 7.9215 -4.5356 3.0700 37 1 6.8333 -0.6432 3.2305 38 1 6.1606 1.5888 2.4419 39 1 4.3412 2.0036 2.0392 40 1 3.5079 3.5487 1.7080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = -107.514195 kcal Electronic energy + Delta-G solvation = -24317.017998 eV Core-core repulsion = 20625.283515 eV Total energy + Delta-G solvation = -3691.734483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.64559 -41.28881 -40.12734 -38.75576 -37.41101 -34.41944 -32.90583 -32.06452 -29.97881 -29.73148 -27.35172 -27.11263 -25.86647 -23.76748 -22.95237 -21.94342 -21.60295 -20.30672 -18.75994 -18.38881 -17.86792 -17.05902 -16.64596 -16.49764 -16.33058 -15.94542 -15.77986 -15.69083 -15.43130 -15.22971 -15.02763 -14.82725 -14.69997 -14.32976 -14.10540 -13.12675 -12.98346 -12.89713 -12.75758 -12.60279 -12.42330 -12.32307 -12.23960 -12.15867 -12.04548 -11.95266 -11.67830 -11.31538 -10.78302 -10.55257 -9.87850 -9.58898 -9.06489 -8.97888 -6.28543 0.45641 0.53301 1.45896 1.58644 1.76606 2.33072 2.48264 2.76083 3.05467 3.17107 3.28018 3.29999 3.37373 3.74988 3.90741 3.93331 3.98902 4.06533 4.13643 4.31128 4.39116 4.43859 4.46776 4.49806 4.63386 4.69889 4.79706 4.81813 4.83871 4.88402 4.93549 5.04137 5.13836 5.17355 5.43525 5.50160 5.65060 5.77796 5.84646 5.99656 6.21058 6.23618 6.82564 7.57747 8.46218 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004299 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.840781 B = 6511.588741 C = 7081.531642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.059 3.941 4 H 0.119 0.881 5 C 0.020 3.980 6 N -0.486 5.486 7 C 0.100 3.900 8 C -0.193 4.193 9 C -0.052 4.052 10 C -0.242 4.242 11 C 0.118 3.882 12 O -0.253 6.253 13 C -0.489 4.489 14 H 0.090 0.910 15 C -0.044 4.044 16 N -0.916 5.916 17 Si 1.145 2.855 18 H -0.272 1.272 19 H -0.258 1.258 20 H -0.261 1.261 21 C -0.208 4.208 22 C -0.057 4.057 23 C -0.003 4.003 24 C 0.044 3.956 25 H 0.124 0.876 26 F -0.224 7.224 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.259 0.741 37 H 0.110 0.890 38 H 0.147 0.853 39 H 0.058 0.942 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 19.069 -7.862 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.000 4.000 4 H 0.136 0.864 5 C -0.107 4.107 6 N -0.209 5.209 7 C -0.027 4.027 8 C -0.195 4.195 9 C -0.070 4.070 10 C -0.261 4.261 11 C 0.068 3.932 12 O -0.161 6.161 13 C -0.564 4.564 14 H 0.108 0.892 15 C -0.240 4.240 16 N -0.550 5.550 17 Si 0.960 3.040 18 H -0.196 1.196 19 H -0.183 1.183 20 H -0.186 1.186 21 C -0.227 4.227 22 C -0.075 4.075 23 C -0.131 4.131 24 C 0.008 3.992 25 H 0.142 0.858 26 F -0.205 7.205 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.076 0.924 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.647 17.726 -8.119 23.239 hybrid contribution -0.276 0.364 1.348 1.423 sum -12.922 18.090 -6.771 23.240 Atomic orbital electron populations 1.23005 0.79149 1.03759 1.01230 1.87997 1.21926 1.27336 1.94794 1.23770 0.95970 0.85862 0.94390 0.86350 1.23486 0.92585 0.93685 1.00992 1.65338 1.06474 1.35930 1.13168 1.21303 0.86958 0.91022 1.03457 1.20430 1.07377 0.98319 0.93336 1.20982 0.95099 0.90940 0.99991 1.21272 1.10133 0.99672 0.95037 1.19835 0.93839 0.85449 0.94089 1.83640 1.77800 1.17340 1.37278 1.22585 1.49304 0.94162 0.90388 0.89241 1.28444 0.93340 0.99477 1.02756 1.70711 1.45642 1.37018 1.01661 0.82598 0.78395 0.72119 0.70852 1.19611 1.18257 1.18578 1.20458 1.10848 0.92809 0.98627 1.20931 0.95783 0.94833 0.95949 1.23746 0.94629 1.02989 0.91755 1.23307 1.00635 0.85716 0.89572 0.85818 1.92820 1.97705 1.58532 1.71451 0.89376 0.93333 0.91521 0.87566 0.93380 0.87971 0.87986 0.84127 0.86686 0.93282 0.87205 0.83562 0.92388 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.88 113.37 1.23 1.68 16 2 O -0.40 -11.04 9.88 -148.98 -1.47 -12.51 16 3 C 0.06 1.28 3.47 31.80 0.11 1.39 16 4 H 0.12 1.75 7.89 -2.39 -0.02 1.73 16 5 C 0.02 0.48 5.78 86.65 0.50 0.98 16 6 N -0.49 -9.79 5.54 -887.58 -4.91 -14.70 16 7 C 0.10 2.08 5.69 85.56 0.49 2.57 16 8 C -0.19 -5.85 3.96 -19.83 -0.08 -5.93 16 9 C -0.05 -1.80 7.48 22.25 0.17 -1.63 16 10 C -0.24 -11.06 9.17 22.39 0.21 -10.85 16 11 C 0.12 6.14 6.65 22.58 0.15 6.29 16 12 O -0.25 -15.73 9.16 -22.68 -0.21 -15.94 16 13 C -0.49 -29.71 9.49 67.92 0.64 -29.07 16 14 H 0.09 5.09 5.20 -2.91 -0.02 5.07 16 15 C -0.04 -2.62 5.49 84.83 0.47 -2.15 16 16 N -0.92 -58.98 13.70 21.61 0.30 -58.68 16 17 Si 1.15 49.49 29.92 68.60 2.05 51.55 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 21 C -0.21 -9.24 9.99 22.39 0.22 -9.01 16 22 C -0.06 -1.92 8.18 22.25 0.18 -1.74 16 23 C 0.00 -0.06 6.31 86.45 0.55 0.49 16 24 C 0.04 0.97 4.72 31.48 0.15 1.11 16 25 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 26 F -0.22 -7.23 16.47 44.97 0.74 -6.49 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 30 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.54 4.85 -2.38 -0.01 1.53 16 32 H 0.10 1.75 8.03 -2.39 -0.02 1.73 16 33 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 34 H 0.14 3.96 8.05 -2.91 -0.02 3.94 16 35 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 36 H 0.26 17.43 7.97 -92.71 -0.74 16.69 16 37 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.15 3.90 7.16 -2.91 -0.02 3.88 16 39 H 0.06 1.41 4.73 -2.39 -0.01 1.40 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.28 327.73 2.57 -75.71 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 1.09 Total: 26.93 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 4.99 Total: -45.87 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -4.62 Total: -73.38 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.68 Total: -28.45 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.74 Total: -6.49 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.55 kcal Total: -78.28 2.57 -75.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.805 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds