Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35996 * 116.99695 * 2 1 4 4 C 1.38623 * 120.06158 * 359.97438 * 3 2 1 5 5 C 1.38225 * 120.04017 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.92080 * 179.72735 * 5 4 3 7 7 N 1.46902 * 109.46919 * 90.00049 * 6 5 4 8 8 C 1.47482 * 111.00058 * 265.96802 * 7 6 5 9 9 C 1.53510 * 87.93471 * 221.30042 * 8 7 6 10 10 C 1.50700 * 114.34679 * 139.68466 * 9 8 7 11 11 H 1.08007 * 119.99530 * 266.07640 * 10 9 8 12 12 C 1.37869 * 119.99952 * 86.07467 * 10 9 8 13 13 N 1.31520 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99850 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47537 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47370 * 120.00345 * 14 12 10 17 17 H 1.48504 * 109.47277 * 239.99818 * 14 12 10 18 18 C 1.47485 * 110.99608 * 169.99921 * 7 6 5 19 19 C 1.38262 * 120.15517 * 0.02562 * 5 4 3 20 20 C 1.38410 * 120.12479 * 359.97438 * 19 5 4 21 21 F 1.35105 * 120.02410 * 180.02562 * 20 19 5 22 22 C 1.38764 * 119.96067 * 0.02562 * 20 19 5 23 23 O 1.36045 * 120.08301 * 180.02562 * 22 20 19 24 24 C 1.42905 * 116.99940 * 269.97730 * 23 22 20 25 25 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47077 * 300.00363 * 1 2 3 27 27 H 1.08993 * 109.47283 * 60.00319 * 1 2 3 28 28 H 1.08002 * 119.98601 * 0.05394 * 4 3 2 29 29 H 1.08998 * 109.46672 * 210.00092 * 6 5 4 30 30 H 1.08994 * 109.47022 * 330.00078 * 6 5 4 31 31 H 1.09000 * 113.47592 * 336.06500 * 8 7 6 32 32 H 1.08997 * 113.47278 * 106.53115 * 8 7 6 33 33 H 1.08998 * 114.16774 * 272.38052 * 9 8 7 34 34 H 0.97000 * 119.99568 * 179.97438 * 13 12 10 35 35 H 1.09006 * 113.47308 * 253.46873 * 18 7 6 36 36 H 1.08996 * 113.47569 * 23.93577 * 18 7 6 37 37 H 1.07998 * 119.93702 * 180.02562 * 19 5 4 38 38 H 1.08993 * 109.46862 * 179.97438 * 24 23 22 39 39 H 1.08994 * 109.46780 * 300.00177 * 24 23 22 40 40 H 1.09001 * 109.47170 * 59.99801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2926 2.3751 -0.0005 5 6 1.9205 3.6065 -0.0011 6 6 1.0984 4.8695 -0.0079 7 7 0.8255 5.2834 1.3749 8 6 -0.4735 4.7595 1.8368 9 6 -0.7229 6.1203 2.5022 10 6 -2.1363 6.6264 2.3707 11 1 -2.3986 7.2912 1.5609 12 6 -3.0943 6.2408 3.2840 13 7 -2.7750 5.4308 4.2697 14 14 -4.8464 6.8676 3.1205 15 1 -4.9456 7.7567 1.9352 16 1 -5.7704 5.7170 2.9544 17 1 -5.2165 7.6271 4.3419 18 6 0.2321 6.6331 1.4151 19 6 3.3011 3.6822 -0.0016 20 6 4.0602 2.5248 -0.0011 21 9 5.4091 2.6011 -0.0011 22 6 3.4350 1.2860 -0.0005 23 8 4.1788 0.1468 0.0005 24 6 4.5335 -0.3975 -1.2723 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 0.2140 2.3194 -0.0001 29 1 1.6484 5.6581 -0.5214 30 1 0.1566 4.6871 -0.5252 31 1 -1.1666 4.5398 1.0248 32 1 -0.3824 3.9386 2.5480 33 1 -0.3297 6.2002 3.5156 34 1 -3.4490 5.1599 4.9125 35 1 0.9213 7.4000 1.7691 36 1 -0.2726 6.9132 0.4906 37 1 3.7880 4.6461 -0.0016 38 1 5.1246 -1.3019 -1.1286 39 1 3.6283 -0.6392 -1.8291 40 1 5.1187 0.3338 -1.8299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137501187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -54.831042 kcal Electronic energy + Delta-G solvation = -23681.261101 eV Core-core repulsion = 19991.811131 eV Total energy + Delta-G solvation = -3689.449970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.91321 -40.53029 -39.07936 -38.12829 -37.02411 -32.90260 -31.58312 -29.99947 -28.81228 -27.53559 -26.89675 -25.29453 -24.84503 -22.92994 -22.44826 -21.13837 -18.71317 -18.36499 -17.43661 -17.40067 -16.65808 -16.35142 -16.07779 -15.47556 -15.07519 -14.93080 -14.77925 -14.72230 -14.55892 -14.17478 -14.09050 -13.43343 -13.00839 -12.43683 -12.28223 -12.13461 -12.01135 -11.86314 -11.75721 -11.40067 -11.12559 -11.00357 -10.96636 -10.62852 -10.35802 -10.11233 -9.83374 -9.34048 -9.02284 -8.61863 -8.50443 -8.25005 -8.09849 -6.11279 -4.16422 0.95097 1.19690 2.97667 3.23061 3.27703 3.32073 3.35006 3.69533 4.30008 4.34796 4.62037 4.87010 4.94115 4.99780 5.09747 5.14650 5.17841 5.18919 5.22910 5.26112 5.39659 5.43704 5.49259 5.65753 5.76871 5.93070 6.00981 6.03784 6.25343 6.34118 6.49172 6.54840 6.60463 6.63582 6.96198 7.06237 7.07755 7.47617 7.66592 7.83313 7.97036 8.30286 8.87440 9.49153 10.98136 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.003596 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.749295 B = 7785.312756 C = 8618.526295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.140 3.860 4 C -0.197 4.197 5 C 0.008 3.992 6 C 0.052 3.948 7 N -0.477 5.477 8 C 0.004 3.996 9 C 0.042 3.958 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.005 4.005 19 C -0.164 4.164 20 C 0.119 3.881 21 F -0.130 7.130 22 C 0.015 3.985 23 O -0.316 6.316 24 C 0.033 3.967 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.139 0.861 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 -9.217 -12.114 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.094 3.906 4 C -0.216 4.216 5 C 0.007 3.993 6 C -0.076 4.076 7 N -0.200 5.200 8 C -0.125 4.125 9 C 0.023 3.977 10 C -0.555 4.555 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.134 4.134 19 C -0.183 4.183 20 C 0.099 3.901 21 F -0.108 7.108 22 C -0.030 4.030 23 O -0.232 6.232 24 C -0.061 4.061 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.178 -9.771 -11.472 18.184 hybrid contribution -1.719 0.507 -0.790 1.959 sum 8.459 -9.263 -12.263 17.543 Atomic orbital electron populations 1.23176 0.77787 1.04172 1.02101 1.86122 1.21694 1.25762 1.88195 1.18987 0.90589 0.85150 0.95897 1.21174 1.00729 0.91029 1.08692 1.19486 0.92615 0.94628 0.92578 1.21689 0.98155 0.93507 0.94240 1.68953 1.29333 1.06426 1.15242 1.24151 0.87150 1.02102 0.99066 1.20093 0.93623 0.89975 0.94024 1.21060 0.93340 1.29262 1.11870 0.92339 1.25023 0.98932 0.94773 0.94874 1.69982 1.33979 1.33666 1.14559 0.86569 0.84726 0.78748 0.78149 1.19713 1.21004 1.20863 1.24046 0.97239 0.91272 1.00815 1.20846 0.93585 0.97296 1.06608 1.17601 0.77157 0.92912 1.02384 1.91490 1.28566 1.97035 1.93714 1.17695 0.87172 0.85648 1.12512 1.86162 1.70052 1.38012 1.29009 1.23017 0.99698 0.98533 0.84873 0.87995 0.91796 0.92444 0.84311 0.90366 0.92674 0.92823 0.91763 0.91710 0.92864 0.91740 0.92622 0.84090 0.88850 0.93451 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.16 10.28 -34.28 -0.35 -4.51 16 3 C 0.14 2.06 6.70 -39.13 -0.26 1.80 16 4 C -0.20 -2.84 8.69 -39.44 -0.34 -3.18 16 5 C 0.01 0.12 5.46 -104.62 -0.57 -0.45 16 6 C 0.05 0.81 4.94 -4.98 -0.02 0.79 16 7 N -0.48 -9.13 6.32 -246.07 -1.55 -10.68 16 8 C 0.00 0.09 7.28 -7.54 -0.05 0.03 16 9 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 10 C -0.52 -13.56 8.83 -34.44 -0.30 -13.87 16 11 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 13 N -0.88 -24.89 13.26 55.43 0.74 -24.16 16 14 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.01 -0.10 7.25 -7.54 -0.05 -0.16 16 19 C -0.16 -2.34 9.67 -39.51 -0.38 -2.73 16 20 C 0.12 1.77 7.31 -39.32 -0.29 1.49 16 21 F -0.13 -1.92 17.11 2.25 0.04 -1.88 16 22 C 0.02 0.23 5.74 -39.08 -0.22 0.01 16 23 O -0.32 -4.70 10.07 -34.43 -0.35 -5.05 16 24 C 0.03 0.35 11.13 101.05 1.13 1.48 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 27 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 28 H 0.14 1.86 6.30 -52.49 -0.33 1.53 16 29 H 0.08 1.08 8.02 -51.93 -0.42 0.66 16 30 H 0.06 0.83 7.24 -51.93 -0.38 0.46 16 31 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 32 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 37 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.50 343.20 -7.80 -37.30 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.64 Total: -0.40 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.83 Total: -11.21 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.82 Total: -34.84 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.70 Total: -9.56 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.50 -7.80 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137501187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.534 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds