Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35996 * 116.99695 * 2 1 4 4 C 1.38623 * 120.06158 * 359.97438 * 3 2 1 5 5 C 1.38225 * 120.04017 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.92080 * 179.72735 * 5 4 3 7 7 N 1.46902 * 109.46919 * 90.00049 * 6 5 4 8 8 C 1.47482 * 111.00058 * 265.96802 * 7 6 5 9 9 C 1.53510 * 87.93471 * 221.30042 * 8 7 6 10 10 C 1.50700 * 114.34679 * 139.68466 * 9 8 7 11 11 H 1.08007 * 119.99530 * 266.07640 * 10 9 8 12 12 C 1.37869 * 119.99952 * 86.07467 * 10 9 8 13 13 N 1.31520 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99850 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47537 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47370 * 120.00345 * 14 12 10 17 17 H 1.48504 * 109.47277 * 239.99818 * 14 12 10 18 18 C 1.47485 * 110.99608 * 169.99921 * 7 6 5 19 19 C 1.38262 * 120.15517 * 0.02562 * 5 4 3 20 20 C 1.38410 * 120.12479 * 359.97438 * 19 5 4 21 21 F 1.35105 * 120.02410 * 180.02562 * 20 19 5 22 22 C 1.38764 * 119.96067 * 0.02562 * 20 19 5 23 23 O 1.36045 * 120.08301 * 180.02562 * 22 20 19 24 24 C 1.42905 * 116.99940 * 269.97730 * 23 22 20 25 25 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47077 * 300.00363 * 1 2 3 27 27 H 1.08993 * 109.47283 * 60.00319 * 1 2 3 28 28 H 1.08002 * 119.98601 * 0.05394 * 4 3 2 29 29 H 1.08998 * 109.46672 * 210.00092 * 6 5 4 30 30 H 1.08994 * 109.47022 * 330.00078 * 6 5 4 31 31 H 1.09000 * 113.47592 * 336.06500 * 8 7 6 32 32 H 1.08997 * 113.47278 * 106.53115 * 8 7 6 33 33 H 1.08998 * 114.16774 * 272.38052 * 9 8 7 34 34 H 0.97000 * 119.99568 * 179.97438 * 13 12 10 35 35 H 1.09006 * 113.47308 * 253.46873 * 18 7 6 36 36 H 1.08996 * 113.47569 * 23.93577 * 18 7 6 37 37 H 1.07998 * 119.93702 * 180.02562 * 19 5 4 38 38 H 1.08993 * 109.46862 * 179.97438 * 24 23 22 39 39 H 1.08994 * 109.46780 * 300.00177 * 24 23 22 40 40 H 1.09001 * 109.47170 * 59.99801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2926 2.3751 -0.0005 5 6 1.9205 3.6065 -0.0011 6 6 1.0984 4.8695 -0.0079 7 7 0.8255 5.2834 1.3749 8 6 -0.4735 4.7595 1.8368 9 6 -0.7229 6.1203 2.5022 10 6 -2.1363 6.6264 2.3707 11 1 -2.3986 7.2912 1.5609 12 6 -3.0943 6.2408 3.2840 13 7 -2.7750 5.4308 4.2697 14 14 -4.8464 6.8676 3.1205 15 1 -4.9456 7.7567 1.9352 16 1 -5.7704 5.7170 2.9544 17 1 -5.2165 7.6271 4.3419 18 6 0.2321 6.6331 1.4151 19 6 3.3011 3.6822 -0.0016 20 6 4.0602 2.5248 -0.0011 21 9 5.4091 2.6011 -0.0011 22 6 3.4350 1.2860 -0.0005 23 8 4.1788 0.1468 0.0005 24 6 4.5335 -0.3975 -1.2723 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 0.2140 2.3194 -0.0001 29 1 1.6484 5.6581 -0.5214 30 1 0.1566 4.6871 -0.5252 31 1 -1.1666 4.5398 1.0248 32 1 -0.3824 3.9386 2.5480 33 1 -0.3297 6.2002 3.5156 34 1 -3.4490 5.1599 4.9125 35 1 0.9213 7.4000 1.7691 36 1 -0.2726 6.9132 0.4906 37 1 3.7880 4.6461 -0.0016 38 1 5.1246 -1.3019 -1.1286 39 1 3.6283 -0.6392 -1.8291 40 1 5.1187 0.3338 -1.8299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137501187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = -73.553530 kcal Electronic energy + Delta-G solvation = -23682.072969 eV Core-core repulsion = 19991.811131 eV Total energy + Delta-G solvation = -3690.261838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.04715 -41.63157 -40.61733 -39.14906 -38.17527 -34.78335 -32.94975 -31.08592 -30.19380 -28.42774 -28.15547 -26.77925 -26.49843 -24.42742 -23.52935 -22.38658 -20.46561 -19.46028 -18.72340 -18.49458 -18.32001 -17.41193 -17.20354 -16.71517 -16.47774 -16.34333 -16.03356 -15.83275 -15.74610 -15.58854 -15.45240 -14.75295 -14.15703 -13.92280 -13.55748 -13.35484 -13.25474 -13.19024 -12.93753 -12.85340 -12.74879 -12.42725 -12.24381 -12.04991 -11.93227 -11.56607 -11.13410 -11.11326 -10.85207 -10.49357 -9.81554 -9.63819 -9.33924 -8.13647 -6.25004 -0.17535 0.09146 1.42698 1.45609 1.56354 1.99159 2.20804 2.43846 2.63048 3.15587 3.19931 3.36586 3.65670 3.80132 3.89293 4.14517 4.19203 4.26168 4.31390 4.32866 4.38614 4.42041 4.48937 4.56714 4.60970 4.68891 4.71256 4.77331 4.80031 4.88435 4.94282 5.00078 5.25733 5.28959 5.45789 5.55932 5.65207 5.87000 5.97628 6.30208 6.37892 6.44236 6.85580 7.44031 8.96116 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.003596 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.749295 B = 7785.312756 C = 8618.526295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.133 3.867 4 C -0.196 4.196 5 C -0.004 4.004 6 C 0.055 3.945 7 N -0.479 5.479 8 C 0.019 3.981 9 C 0.018 3.982 10 C -0.527 4.527 11 H 0.062 0.938 12 C 0.015 3.985 13 N -0.923 5.923 14 Si 0.956 3.044 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.284 1.284 18 C 0.011 3.989 19 C -0.160 4.160 20 C 0.109 3.891 21 F -0.132 7.132 22 C 0.008 3.992 23 O -0.338 6.338 24 C 0.029 3.971 25 H 0.127 0.873 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -9.128 -13.895 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.086 3.914 4 C -0.216 4.216 5 C -0.005 4.005 6 C -0.073 4.073 7 N -0.202 5.202 8 C -0.110 4.110 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.080 0.920 12 C -0.185 4.185 13 N -0.561 5.561 14 Si 0.782 3.218 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.117 4.117 19 C -0.179 4.179 20 C 0.089 3.911 21 F -0.110 7.110 22 C -0.038 4.038 23 O -0.255 6.255 24 C -0.065 4.065 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.164 0.836 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.135 0.865 39 H 0.070 0.930 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.968 -9.677 -13.275 19.215 hybrid contribution -1.586 0.404 -0.258 1.657 sum 8.382 -9.273 -13.533 18.422 Atomic orbital electron populations 1.23431 0.76065 1.06009 1.02317 1.86109 1.23463 1.25354 1.88059 1.19049 0.90625 0.85635 0.96054 1.21293 1.01159 0.90974 1.08142 1.19466 0.92817 0.94479 0.93697 1.21720 0.99016 0.94520 0.92031 1.68853 1.27520 1.05622 1.18161 1.23860 0.88736 0.99861 0.98552 1.20044 0.93807 0.92695 0.93550 1.21409 0.94422 1.28896 1.11759 0.91951 1.25818 1.02968 0.95035 0.94642 1.70112 1.35234 1.35233 1.15560 0.85537 0.79852 0.78234 0.78210 1.18614 1.20670 1.20954 1.23867 0.96292 0.91904 0.99628 1.20984 0.93412 0.97776 1.05724 1.17686 0.77170 0.93139 1.03128 1.91479 1.28677 1.97052 1.93824 1.17916 0.87645 0.86005 1.12192 1.86104 1.70099 1.37982 1.31328 1.23245 1.00347 0.99427 0.83494 0.85458 0.92692 0.91039 0.83598 0.87978 0.91871 0.92289 0.94040 0.95562 0.92950 0.90652 0.91164 0.82607 0.86532 0.92973 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -8.34 10.28 -79.59 -0.82 -9.16 16 3 C 0.13 3.81 6.70 22.56 0.15 3.96 16 4 C -0.20 -5.44 8.69 22.36 0.19 -5.25 16 5 C 0.00 -0.10 5.46 -19.86 -0.11 -0.21 16 6 C 0.05 1.57 4.94 85.56 0.42 2.00 16 7 N -0.48 -17.71 6.32 -932.43 -5.89 -23.60 16 8 C 0.02 0.83 7.28 83.58 0.61 1.44 16 9 C 0.02 0.88 3.76 -11.19 -0.04 0.84 16 10 C -0.53 -27.56 8.83 25.60 0.23 -27.34 16 11 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 12 C 0.01 0.79 5.46 84.65 0.46 1.25 16 13 N -0.92 -52.95 13.26 21.45 0.28 -52.67 16 14 Si 0.96 41.79 29.54 68.60 2.03 43.81 16 15 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C 0.01 0.44 7.25 83.58 0.61 1.05 16 19 C -0.16 -4.32 9.67 22.32 0.22 -4.10 16 20 C 0.11 3.13 7.31 22.44 0.16 3.29 16 21 F -0.13 -3.79 17.11 44.97 0.77 -3.02 16 22 C 0.01 0.24 5.74 22.59 0.13 0.37 16 23 O -0.34 -9.80 10.07 -80.15 -0.81 -10.61 16 24 C 0.03 0.57 11.13 113.37 1.26 1.83 16 25 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.12 16 28 H 0.15 3.74 6.30 -2.91 -0.02 3.72 16 29 H 0.10 2.46 8.02 -2.39 -0.02 2.45 16 30 H 0.06 1.74 7.24 -2.39 -0.02 1.72 16 31 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.07 2.49 7.87 -2.39 -0.02 2.47 16 37 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -63.35 343.20 2.01 -61.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.04 Total: 13.38 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 5.40 Total: -19.47 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -5.60 Total: -76.27 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.63 Total: -19.77 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.77 Total: -3.02 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -63.35 2.01 -61.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137501187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.215 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds