Wall clock time and date at job start Tue Mar 31 2020 07:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.50694 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.33390 * 125.20551 * 90.00246 * 4 3 2 6 6 C 1.38419 * 114.92264 * 179.97438 * 5 4 3 7 7 C 1.33390 * 114.92394 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.20568 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46960 * 90.00116 * 8 7 6 10 10 C 1.46847 * 110.99995 * 66.04388 * 9 8 7 11 11 C 1.53040 * 109.52317 * 185.83949 * 10 9 8 12 12 C 1.53120 * 109.27900 * 300.82110 * 11 10 9 13 13 C 1.53120 * 109.15876 * 57.65511 * 12 11 10 14 14 H 1.08998 * 109.50361 * 62.28598 * 13 12 11 15 15 C 1.50703 * 109.50291 * 182.36536 * 13 12 11 16 16 H 1.08001 * 119.99924 * 120.00049 * 15 13 12 17 17 C 1.37873 * 119.99970 * 299.99725 * 15 13 12 18 18 N 1.31520 * 120.00142 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00117 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46876 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46757 * 120.00326 * 19 17 15 22 22 H 1.48503 * 109.47286 * 240.00176 * 19 17 15 23 23 C 1.46850 * 111.00265 * 190.25401 * 9 8 7 24 24 S 1.75881 * 125.20175 * 269.69424 * 4 3 2 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 29 29 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 30 30 H 1.07996 * 122.54020 * 359.95266 * 5 4 3 31 31 H 1.07999 * 122.54321 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47337 * 209.99559 * 8 7 6 33 33 H 1.08997 * 109.47392 * 330.00198 * 8 7 6 34 34 H 1.08996 * 109.46575 * 305.85690 * 10 9 8 35 35 H 1.08995 * 109.46210 * 65.82736 * 10 9 8 36 36 H 1.08997 * 109.50335 * 60.76091 * 11 10 9 37 37 H 1.08997 * 109.50307 * 180.88237 * 11 10 9 38 38 H 1.09004 * 109.52188 * 177.55945 * 12 11 10 39 39 H 1.08994 * 109.52325 * 297.68705 * 12 11 10 40 40 H 0.96996 * 120.00102 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.45920 * 294.17879 * 23 9 8 42 42 H 1.08998 * 109.45695 * 54.14163 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2787 1.1258 -1.0909 6 6 5.6366 1.0187 -0.8444 7 6 5.9732 0.9917 0.4461 8 6 7.3800 0.8812 0.9748 9 7 7.9453 2.2261 1.1473 10 6 7.2341 2.9651 2.1983 11 6 7.7510 4.4046 2.2504 12 6 9.2548 4.3917 2.5381 13 6 9.9665 3.5752 1.4557 14 1 9.8182 4.0495 0.4856 15 6 11.4403 3.5087 1.7632 16 1 11.9167 2.5521 1.9193 17 6 12.1805 4.6690 1.8451 18 7 11.6003 5.8340 1.6553 19 14 14.0072 4.5867 2.2269 20 1 14.4139 3.1686 2.3966 21 1 14.7744 5.1908 1.1080 22 1 14.2855 5.3352 3.4789 23 6 9.3855 2.1598 1.4267 24 16 4.5244 1.1136 1.4361 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8705 1.1576 -2.0902 31 1 6.3681 0.9614 -1.6368 32 1 7.3677 0.3663 1.9355 33 1 7.9904 0.3183 0.2687 34 1 6.1663 2.9703 1.9795 35 1 7.4052 2.4827 3.1606 36 1 7.5678 4.8919 1.2928 37 1 7.2340 4.9484 3.0410 38 1 9.6354 5.4131 2.5332 39 1 9.4352 3.9404 3.5137 40 1 12.1209 6.6503 1.7133 41 1 9.5464 1.6812 2.3926 42 1 9.8802 1.5800 0.6474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139827414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:17 Heat of formation + Delta-G solvation = -16.643908 kcal Electronic energy + Delta-G solvation = -21245.134679 eV Core-core repulsion = 18123.553804 eV Total energy + Delta-G solvation = -3121.580875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.74062 -38.25180 -37.16711 -33.99433 -32.16996 -30.81166 -29.83770 -27.92586 -26.31702 -24.95473 -24.20553 -22.82310 -21.81047 -21.25692 -18.81574 -18.54419 -17.17905 -16.69674 -16.37723 -15.85840 -15.50242 -15.18450 -14.69032 -14.42878 -14.15784 -13.51676 -13.26018 -12.96658 -12.76149 -12.71405 -12.37307 -12.25663 -12.07800 -11.76602 -11.63871 -11.57850 -11.15752 -10.96049 -10.70060 -10.66018 -10.57296 -10.09708 -10.00247 -9.83163 -9.47024 -9.11312 -8.69257 -8.53809 -8.35203 -8.25394 -7.68522 -5.96522 -4.02777 0.95089 1.62322 2.05269 2.75261 3.30455 3.38577 3.42142 3.68809 4.41076 4.62324 4.67880 4.85684 4.92844 5.00288 5.05510 5.11483 5.33138 5.33544 5.37783 5.57797 5.69732 5.71003 5.83687 5.85013 6.09500 6.20565 6.26928 6.35998 6.40456 6.51265 6.58297 6.73515 6.76275 6.79653 6.96327 7.22990 7.39417 7.64481 7.74765 7.79736 8.09265 8.18726 8.48682 9.01487 9.61536 11.09427 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.002898 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.692212 B = 9658.277719 C = 9852.868740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.138 3.862 4 C -0.202 4.202 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.144 4.144 8 C 0.120 3.880 9 N -0.531 5.531 10 C 0.056 3.944 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.035 0.965 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.068 3.932 24 S 0.107 5.893 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.038 0.962 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.259 0.741 41 H 0.020 0.980 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.532 -9.076 -2.733 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.060 3.940 4 C -0.319 4.319 5 C -0.137 4.137 6 C -0.162 4.162 7 C -0.262 4.262 8 C -0.010 4.010 9 N -0.256 5.256 10 C -0.072 4.072 11 C -0.153 4.153 12 C -0.149 4.149 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.059 4.059 24 S 0.372 5.628 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.710 -8.772 -1.601 21.633 hybrid contribution 1.134 -0.192 -0.529 1.265 sum -18.576 -8.963 -2.130 20.735 Atomic orbital electron populations 1.22763 0.80915 1.02915 1.00044 1.87998 1.19579 1.27496 1.95418 1.20709 0.87209 0.85016 1.01104 1.23994 0.97716 1.13643 0.96594 1.20085 0.93075 1.01564 0.98948 1.20049 0.95830 1.04107 0.96211 1.24541 0.98195 1.07015 0.96412 1.20591 0.88777 0.92229 0.99425 1.62055 1.04788 1.12991 1.45788 1.22181 0.97408 0.95879 0.91714 1.21656 0.99109 0.93895 1.00666 1.21661 0.90714 1.04372 0.98156 1.18665 0.93319 0.88525 0.95839 0.94699 1.21179 0.93316 0.92617 1.48127 0.92775 1.24938 0.98180 0.95511 0.95259 1.69904 1.35452 0.97344 1.49985 0.86573 0.85711 0.78030 0.77878 1.19866 1.21049 1.21116 1.22347 0.84114 1.01544 0.97862 1.84204 0.96919 1.72328 1.09360 0.89479 0.93952 0.93987 0.91471 0.92325 0.84534 0.83986 0.94377 0.89027 0.91967 0.95958 0.92095 0.93527 0.89056 0.95178 0.93119 0.96155 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.23 10.69 -35.23 -0.38 -4.61 16 3 C 0.14 1.39 6.43 36.00 0.23 1.62 16 4 C -0.20 -2.51 6.14 -36.01 -0.22 -2.73 16 5 C -0.11 -1.29 10.05 -41.21 -0.41 -1.71 16 6 C -0.13 -1.77 10.05 -41.21 -0.41 -2.19 16 7 C -0.14 -2.08 5.27 -36.00 -0.19 -2.27 16 8 C 0.12 1.85 5.46 -4.98 -0.03 1.83 16 9 N -0.53 -9.93 4.65 -236.12 -1.10 -11.03 16 10 C 0.06 1.03 5.28 -3.83 -0.02 1.01 16 11 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 12 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 13 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.51 -14.04 8.57 -34.44 -0.29 -14.33 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.36 11.35 55.43 0.63 -24.73 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 24 S 0.11 1.43 21.70 -107.50 -2.33 -0.91 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.04 0.58 8.12 -51.93 -0.42 0.15 16 33 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 34 H 0.06 1.05 5.69 -51.93 -0.30 0.75 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -29.47 348.55 -10.70 -40.18 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.90 Total: -1.90 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.85 Total: -18.48 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.47 Total: -35.76 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.38 Total: -4.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.33 Total: -0.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.47 -10.70 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139827414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.533 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds