Wall clock time and date at job start Tue Mar 31 2020 07:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.50694 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.33390 * 125.20551 * 90.00246 * 4 3 2 6 6 C 1.38419 * 114.92264 * 179.97438 * 5 4 3 7 7 C 1.33390 * 114.92394 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.20568 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46960 * 90.00116 * 8 7 6 10 10 C 1.46847 * 110.99995 * 66.04388 * 9 8 7 11 11 C 1.53040 * 109.52317 * 185.83949 * 10 9 8 12 12 C 1.53120 * 109.27900 * 300.82110 * 11 10 9 13 13 C 1.53120 * 109.15876 * 57.65511 * 12 11 10 14 14 H 1.08998 * 109.50361 * 62.28598 * 13 12 11 15 15 C 1.50703 * 109.50291 * 182.36536 * 13 12 11 16 16 H 1.08001 * 119.99924 * 120.00049 * 15 13 12 17 17 C 1.37873 * 119.99970 * 299.99725 * 15 13 12 18 18 N 1.31520 * 120.00142 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00117 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46876 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46757 * 120.00326 * 19 17 15 22 22 H 1.48503 * 109.47286 * 240.00176 * 19 17 15 23 23 C 1.46850 * 111.00265 * 190.25401 * 9 8 7 24 24 S 1.75881 * 125.20175 * 269.69424 * 4 3 2 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 29 29 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 30 30 H 1.07996 * 122.54020 * 359.95266 * 5 4 3 31 31 H 1.07999 * 122.54321 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47337 * 209.99559 * 8 7 6 33 33 H 1.08997 * 109.47392 * 330.00198 * 8 7 6 34 34 H 1.08996 * 109.46575 * 305.85690 * 10 9 8 35 35 H 1.08995 * 109.46210 * 65.82736 * 10 9 8 36 36 H 1.08997 * 109.50335 * 60.76091 * 11 10 9 37 37 H 1.08997 * 109.50307 * 180.88237 * 11 10 9 38 38 H 1.09004 * 109.52188 * 177.55945 * 12 11 10 39 39 H 1.08994 * 109.52325 * 297.68705 * 12 11 10 40 40 H 0.96996 * 120.00102 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.45920 * 294.17879 * 23 9 8 42 42 H 1.08998 * 109.45695 * 54.14163 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2787 1.1258 -1.0909 6 6 5.6366 1.0187 -0.8444 7 6 5.9732 0.9917 0.4461 8 6 7.3800 0.8812 0.9748 9 7 7.9453 2.2261 1.1473 10 6 7.2341 2.9651 2.1983 11 6 7.7510 4.4046 2.2504 12 6 9.2548 4.3917 2.5381 13 6 9.9665 3.5752 1.4557 14 1 9.8182 4.0495 0.4856 15 6 11.4403 3.5087 1.7632 16 1 11.9167 2.5521 1.9193 17 6 12.1805 4.6690 1.8451 18 7 11.6003 5.8340 1.6553 19 14 14.0072 4.5867 2.2269 20 1 14.4139 3.1686 2.3966 21 1 14.7744 5.1908 1.1080 22 1 14.2855 5.3352 3.4789 23 6 9.3855 2.1598 1.4267 24 16 4.5244 1.1136 1.4361 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8705 1.1576 -2.0902 31 1 6.3681 0.9614 -1.6368 32 1 7.3677 0.3663 1.9355 33 1 7.9904 0.3183 0.2687 34 1 6.1663 2.9703 1.9795 35 1 7.4052 2.4827 3.1606 36 1 7.5678 4.8919 1.2928 37 1 7.2340 4.9484 3.0410 38 1 9.6354 5.4131 2.5332 39 1 9.4352 3.9404 3.5137 40 1 12.1209 6.6503 1.7133 41 1 9.5464 1.6812 2.3926 42 1 9.8802 1.5800 0.6474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139827414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:16 Heat of formation + Delta-G solvation = -33.589664 kcal Electronic energy + Delta-G solvation = -21245.869502 eV Core-core repulsion = 18123.553804 eV Total energy + Delta-G solvation = -3122.315698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06034 -39.26161 -38.17275 -35.72920 -33.85649 -32.03369 -31.58849 -28.97225 -27.06742 -26.92820 -25.34924 -23.92569 -23.43722 -22.77937 -20.42871 -19.73015 -18.48892 -18.05724 -17.38485 -16.91029 -16.62848 -16.39344 -16.32679 -15.65564 -15.54463 -14.98786 -14.75016 -14.47515 -14.19279 -13.82155 -13.59688 -13.55631 -13.23282 -13.16836 -12.86940 -12.75780 -12.64731 -12.49926 -12.32193 -12.16801 -11.84104 -11.75149 -11.62436 -11.40225 -10.92837 -10.67619 -10.65989 -10.38426 -9.59944 -9.35105 -9.15040 -8.07231 -6.21326 -0.04961 0.62884 1.05152 1.40878 1.42696 1.53894 1.76893 2.43583 3.00078 3.15466 3.19887 3.77037 3.91632 4.12006 4.14780 4.18541 4.30605 4.38507 4.41699 4.54566 4.55153 4.57393 4.61114 4.70794 4.73161 4.78551 4.86980 4.87469 4.96568 5.06580 5.16594 5.23138 5.36261 5.37221 5.51067 5.59971 5.64382 5.94722 6.10642 6.15984 6.19839 6.25540 6.44949 6.91423 7.46586 8.97653 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.002898 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.692212 B = 9658.277719 C = 9852.868740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.135 3.865 4 C -0.199 4.199 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.168 4.168 8 C 0.123 3.877 9 N -0.541 5.541 10 C 0.063 3.937 11 C -0.109 4.109 12 C -0.104 4.104 13 C 0.053 3.947 14 H -0.002 1.002 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.081 3.919 24 S 0.098 5.902 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.018 0.982 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.944 -10.010 -2.922 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.058 3.942 4 C -0.316 4.316 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.286 4.286 8 C -0.006 4.006 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.146 4.146 12 C -0.142 4.142 13 C 0.035 3.965 14 H 0.016 0.984 15 C -0.572 4.572 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.046 4.046 24 S 0.363 5.637 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.140 -9.721 -1.790 23.337 hybrid contribution 1.472 0.089 -0.521 1.564 sum -19.668 -9.632 -2.311 22.022 Atomic orbital electron populations 1.22966 0.78993 1.03993 1.01214 1.87946 1.21723 1.27897 1.95667 1.20828 0.85679 0.85172 1.02550 1.24385 0.99031 1.12302 0.95896 1.20323 0.92539 1.01523 1.00121 1.20293 0.96745 1.02882 0.96096 1.24434 0.97886 1.09218 0.97053 1.20565 0.89630 0.90326 1.00047 1.61968 1.03409 1.15303 1.45863 1.22122 0.98226 0.94343 0.91841 1.21565 0.96560 0.95755 1.00769 1.21470 0.93321 1.02031 0.97381 1.18581 0.93024 0.90849 0.94092 0.98425 1.21541 0.94825 0.92680 1.48155 0.92872 1.25727 1.02514 0.95197 0.95142 1.70046 1.36985 0.97881 1.50638 0.85559 0.80468 0.78267 0.77661 1.19101 1.20677 1.20706 1.22020 0.85915 0.98773 0.97870 1.84170 0.96874 1.72576 1.10096 0.88557 0.92527 0.93042 0.89429 0.91433 0.82295 0.83322 0.93847 0.88189 0.90059 0.95683 0.93230 0.91319 0.92253 0.95821 0.93092 0.96351 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.13 10.69 -148.98 -1.59 -9.72 16 3 C 0.14 2.39 6.43 71.23 0.46 2.85 16 4 C -0.20 -4.50 6.14 24.59 0.15 -4.35 16 5 C -0.11 -2.55 10.05 21.22 0.21 -2.34 16 6 C -0.13 -3.27 10.05 21.22 0.21 -3.06 16 7 C -0.17 -4.63 5.27 24.59 0.13 -4.50 16 8 C 0.12 3.68 5.46 85.56 0.47 4.15 16 9 N -0.54 -19.89 4.65 -900.95 -4.19 -24.07 16 10 C 0.06 2.23 5.28 86.33 0.46 2.68 16 11 C -0.11 -4.34 6.09 30.65 0.19 -4.16 16 12 C -0.10 -5.07 5.02 30.67 0.15 -4.92 16 13 C 0.05 2.75 2.26 -11.49 -0.03 2.72 16 14 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 15 C -0.53 -29.71 8.57 25.60 0.22 -29.49 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.63 11.35 21.45 0.24 -53.39 16 19 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.08 3.46 4.68 86.32 0.40 3.86 16 24 S 0.10 2.45 21.70 -56.49 -1.23 1.23 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 33 H 0.10 2.77 7.98 -2.39 -0.02 2.75 16 34 H 0.08 2.60 5.69 -2.39 -0.01 2.59 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 3.27 6.15 -2.38 -0.01 3.26 16 39 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.63 8.01 -2.39 -0.02 2.61 16 Total: -1.00 -63.74 348.55 0.97 -62.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.98 Total: 11.05 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.72 Total: -33.85 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -3.94 Total: -77.46 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -1.59 Total: -9.72 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.23 Total: 1.23 kcal Total: -63.74 0.97 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139827414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.181 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds