Wall clock time and date at job start Tue Mar 31 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36231 * 116.99931 * 2 1 4 4 C 1.38676 * 122.58977 * 0.19462 * 3 2 1 5 5 C 1.33431 * 114.88643 * 180.31697 * 4 3 2 6 6 S 1.75866 * 109.65814 * 359.73157 * 5 4 3 7 7 C 1.33632 * 122.58783 * 180.02562 * 3 2 1 8 8 C 1.50698 * 125.19359 * 359.97415 * 7 3 2 9 9 N 1.46894 * 109.46996 * 96.06775 * 8 7 3 10 10 C 1.46899 * 110.99962 * 159.99886 * 9 8 7 11 11 C 1.50708 * 109.47197 * 209.12170 * 10 9 8 12 12 H 1.07997 * 119.99617 * 357.24328 * 11 10 9 13 13 C 1.37874 * 120.00119 * 177.23896 * 11 10 9 14 14 N 1.31516 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99969 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47209 * 60.00228 * 15 13 11 17 17 H 1.48499 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47179 * 300.00038 * 15 13 11 19 19 C 1.46905 * 111.00018 * 283.94859 * 9 8 7 20 20 C 1.54962 * 110.92735 * 186.38397 * 19 9 8 21 21 C 1.54266 * 104.16117 * 156.29632 * 20 19 9 22 22 C 1.53872 * 106.63874 * 336.44221 * 21 20 19 23 23 C 1.54262 * 106.60148 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47131 * 300.00320 * 1 2 3 25 25 H 1.08998 * 109.47067 * 60.00006 * 1 2 3 26 26 H 1.08992 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.08004 * 122.55378 * 0.05088 * 4 3 2 28 28 H 1.07997 * 125.17243 * 179.77129 * 5 4 3 29 29 H 1.09004 * 109.47256 * 336.06399 * 8 7 3 30 30 H 1.08998 * 109.46762 * 216.06575 * 8 7 3 31 31 H 1.08998 * 109.47032 * 329.12184 * 10 9 8 32 32 H 1.09003 * 109.47529 * 89.12317 * 10 9 8 33 33 H 0.96999 * 119.99730 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.67042 * 63.07361 * 19 9 8 35 35 H 1.08996 * 110.47454 * 37.64117 * 20 19 9 36 36 H 1.08998 * 110.52668 * 274.97909 * 20 19 9 37 37 H 1.09004 * 110.02858 * 217.13576 * 21 20 19 38 38 H 1.09003 * 110.03134 * 95.75409 * 21 20 19 39 39 H 1.09007 * 110.02973 * 119.26483 * 22 21 20 40 40 H 1.08996 * 110.03487 * 240.63889 * 22 21 20 41 41 H 1.09000 * 110.48776 * 142.28390 * 23 22 21 42 42 H 1.09003 * 110.48645 * 264.79863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4098 0.0040 5 6 2.1051 3.5068 -0.0033 6 16 3.8035 3.0503 -0.0082 7 6 3.3774 1.3440 -0.0005 8 6 4.3618 0.2029 -0.0006 9 7 4.7919 -0.0726 -1.3778 10 6 6.0587 -0.8162 -1.3949 11 6 6.8203 -0.4822 -2.6518 12 1 6.3853 0.1781 -3.3874 13 6 8.0724 -1.0197 -2.8625 14 7 8.6019 -1.8242 -1.9670 15 14 9.0166 -0.6053 -4.4200 16 1 9.2397 0.8613 -4.4882 17 1 10.3261 -1.3055 -4.4062 18 1 8.2345 -1.0426 -5.6043 19 6 3.7490 -0.7923 -2.1211 20 6 4.2621 -1.2221 -3.5187 21 6 3.3668 -2.4199 -3.8975 22 6 2.8359 -3.0077 -2.5782 23 6 3.4274 -2.1472 -1.4428 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2662 2.4502 0.0081 28 1 1.7335 4.5208 -0.0052 29 1 3.8880 -0.6857 0.4168 30 1 5.2283 0.4706 0.6041 31 1 6.6542 -0.5394 -0.5249 32 1 5.8524 -1.8862 -1.3686 33 1 9.4829 -2.2020 -2.1151 34 1 2.8502 -0.1823 -2.2111 35 1 5.3066 -1.5289 -3.4637 36 1 4.1390 -0.4116 -4.2370 37 1 3.9516 -3.1690 -4.4314 38 1 2.5359 -2.0836 -4.5176 39 1 1.7473 -2.9559 -2.5578 40 1 3.1621 -4.0423 -2.4723 41 1 2.6955 -2.0108 -0.6466 42 1 4.3356 -2.6050 -1.0506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141324607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:29 Heat of formation + Delta-G solvation = -15.314823 kcal Electronic energy + Delta-G solvation = -22778.102899 eV Core-core repulsion = 19656.579657 eV Total energy + Delta-G solvation = -3121.523242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88575 -39.83847 -36.78171 -35.96041 -34.66295 -31.75189 -29.71627 -28.91131 -28.52929 -27.23394 -25.72663 -24.03988 -23.46317 -21.06601 -20.31992 -20.15342 -18.58348 -18.03882 -17.44689 -17.26079 -16.71476 -16.44824 -16.10477 -15.85030 -15.39387 -14.80153 -14.55330 -14.47470 -14.07135 -13.82995 -13.63754 -13.54218 -12.97703 -12.79257 -12.72786 -12.59293 -12.40769 -12.23794 -12.11646 -11.94340 -11.78598 -11.76144 -11.60769 -11.50932 -11.31959 -11.16018 -10.93166 -10.47669 -9.50167 -8.90039 -8.75302 -8.10233 -6.14717 0.13973 0.76825 1.14467 1.42703 1.44957 1.52524 1.83532 2.44826 2.80576 3.17853 3.41032 3.85015 3.91903 3.99205 4.15613 4.22812 4.34022 4.44887 4.49777 4.60662 4.62143 4.70370 4.75447 4.79396 4.81703 4.89704 4.93746 4.95998 5.06753 5.09394 5.14360 5.19242 5.20469 5.34194 5.51670 5.54050 5.59201 5.76651 5.91150 6.18091 6.50077 6.56838 6.71699 6.95553 7.48188 8.98240 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.005775 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.903076 B = 4847.365286 C = 5978.741772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.322 6.322 3 C 0.097 3.903 4 C -0.194 4.194 5 C -0.184 4.184 6 S 0.122 5.878 7 C -0.235 4.235 8 C 0.137 3.863 9 N -0.531 5.531 10 C 0.206 3.794 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.957 3.043 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.108 3.892 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.149 4.149 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.171 0.829 28 H 0.200 0.800 29 H 0.046 0.954 30 H 0.055 0.945 31 H -0.009 1.009 32 H -0.015 1.015 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 6.187 3.102 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.237 6.237 3 C 0.041 3.959 4 C -0.226 4.226 5 C -0.320 4.320 6 S 0.385 5.615 7 C -0.353 4.353 8 C 0.008 3.992 9 N -0.254 5.254 10 C 0.080 3.920 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.577 5.577 15 Si 0.783 3.217 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.193 1.193 19 C 0.000 4.000 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.188 4.188 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.188 0.812 28 H 0.217 0.783 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.009 0.991 32 H 0.002 0.998 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.186 7.152 2.899 18.840 hybrid contribution -0.514 -1.436 -0.098 1.528 sum -17.701 5.717 2.802 18.811 Atomic orbital electron populations 1.23252 0.77007 1.04948 1.01996 1.86174 1.22723 1.25183 1.89633 1.17844 0.90601 0.86122 1.01346 1.20371 1.02573 0.90501 1.09141 1.25825 0.95319 1.03914 1.06953 1.84403 1.07120 0.97086 1.72918 1.23456 0.95418 0.98585 1.17864 1.20165 0.94791 0.93519 0.90690 1.62186 1.03659 1.47593 1.11941 1.19485 0.85718 0.91022 0.95734 1.21340 1.00502 1.26804 1.04491 0.92103 1.25771 0.98423 0.95477 0.99868 1.70076 1.17402 1.33472 1.36704 0.85617 0.77658 0.78419 0.80056 1.19707 1.21139 1.19297 1.22379 0.92849 0.91524 0.93282 1.22917 1.02371 0.97135 0.95459 1.22101 0.98852 0.97140 0.97500 1.21957 1.00489 0.98400 0.93786 1.22865 0.99621 0.97440 0.98897 0.91692 0.92068 0.87211 0.81188 0.78336 0.93626 0.92645 0.99084 0.99760 0.92997 0.90977 0.89504 0.93333 0.92655 0.90839 0.90229 0.92371 0.91003 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.92 113.37 1.12 1.51 16 2 O -0.32 -8.83 8.70 -96.19 -0.84 -9.67 16 3 C 0.10 2.83 6.02 21.33 0.13 2.96 16 4 C -0.19 -4.29 9.16 21.29 0.20 -4.09 16 5 C -0.18 -3.92 11.22 66.73 0.75 -3.17 16 6 S 0.12 3.59 23.32 -56.49 -1.32 2.27 16 7 C -0.24 -8.06 5.60 24.64 0.14 -7.92 16 8 C 0.14 5.57 5.26 85.56 0.45 6.02 16 9 N -0.53 -24.10 4.44 -872.34 -3.88 -27.97 16 10 C 0.21 11.14 4.23 85.56 0.36 11.51 16 11 C -0.49 -27.97 6.48 25.60 0.17 -27.80 16 12 H 0.06 3.45 7.14 -2.91 -0.02 3.43 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 15 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 C 0.11 4.35 2.92 46.23 0.14 4.49 16 20 C -0.14 -5.85 5.26 31.69 0.17 -5.68 16 21 C -0.12 -3.90 6.80 31.32 0.21 -3.69 16 22 C -0.11 -3.36 6.80 31.32 0.21 -3.15 16 23 C -0.15 -5.52 4.97 31.67 0.16 -5.37 16 24 H 0.06 0.86 7.84 -2.39 -0.02 0.84 16 25 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.17 2.59 6.91 -2.91 -0.02 2.57 16 28 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.05 1.85 6.04 -2.38 -0.01 1.83 16 30 H 0.06 2.37 7.51 -2.39 -0.02 2.35 16 31 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 32 H -0.02 -0.87 5.57 -2.39 -0.01 -0.89 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.83 6.99 -2.39 -0.02 2.81 16 35 H 0.09 4.34 4.44 -2.39 -0.01 4.33 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.48 6.49 -2.39 -0.02 2.47 16 42 H 0.04 1.63 6.00 -2.39 -0.01 1.62 16 Total: -1.00 -66.67 336.15 1.95 -64.72 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.01 Total: 13.86 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.66 Total: -33.83 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.59 Total: -84.50 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.84 Total: -9.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.32 Total: 2.27 kcal Total: -66.67 1.95 -64.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141324607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.402 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds