Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36040 * 116.99857 * 2 1 4 4 C 1.38632 * 120.00817 * 359.97438 * 3 2 1 5 5 C 1.38162 * 120.02390 * 179.97438 * 4 3 2 6 6 C 1.38703 * 120.04174 * 359.76349 * 5 4 3 7 7 O 1.35982 * 119.99873 * 180.27697 * 6 5 4 8 8 C 1.42902 * 116.99681 * 0.23093 * 7 6 5 9 9 C 1.38681 * 120.01198 * 0.50970 * 6 5 4 10 10 C 1.50702 * 120.01509 * 179.74043 * 9 6 5 11 11 N 1.46902 * 109.47215 * 269.73047 * 10 9 6 12 12 C 1.47961 * 111.00005 * 169.99576 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47387 * 119.99775 * 18 16 14 21 21 H 1.48498 * 109.47096 * 240.00236 * 18 16 14 22 22 C 1.48296 * 111.00409 * 269.34877 * 11 10 9 23 23 C 1.38316 * 119.97542 * 359.46873 * 9 6 5 24 24 F 1.35103 * 120.01912 * 180.29186 * 23 9 6 25 25 H 1.08998 * 109.47035 * 59.99592 * 1 2 3 26 26 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47201 * 299.99676 * 1 2 3 28 28 H 1.08001 * 119.98657 * 0.02562 * 4 3 2 29 29 H 1.08008 * 119.98168 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.46969 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47007 * 300.00532 * 8 7 6 32 32 H 1.09006 * 109.46995 * 60.00309 * 8 7 6 33 33 H 1.09001 * 109.47251 * 149.72623 * 10 9 6 34 34 H 1.09004 * 109.46551 * 29.72989 * 10 9 6 35 35 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 36 36 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 37 37 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 38 38 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 40 40 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9186 3.6061 0.0000 6 6 3.3036 3.6801 0.0060 7 8 3.9196 4.8924 0.0122 8 6 3.0784 6.0475 0.0173 9 6 4.0604 2.5180 0.0008 10 6 5.5653 2.5984 0.0015 11 7 6.0549 2.6243 -1.3833 12 6 7.4993 2.9418 -1.4292 13 6 7.6029 1.8381 -2.4972 14 6 8.8120 0.9525 -2.3390 15 1 9.5226 1.1450 -1.5489 16 6 9.0109 -0.1033 -3.2031 17 7 8.1459 -0.3374 -4.1656 18 14 10.5100 -1.2005 -3.0075 19 1 11.3230 -0.7277 -1.8582 20 1 10.0720 -2.5982 -2.7627 21 1 11.3272 -1.1476 -4.2462 22 6 6.3207 1.2522 -1.8789 23 6 3.4335 1.2851 0.0008 24 9 4.1699 0.1524 0.0017 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 0.2132 2.3182 -0.0005 29 1 1.3297 4.5116 0.0000 30 1 3.6952 6.9461 0.0225 31 1 2.4496 6.0430 -0.8731 32 1 2.4486 6.0345 0.9069 33 1 5.9753 1.7292 0.5157 34 1 5.8803 3.5066 0.5154 35 1 8.0294 2.7101 -0.5053 36 1 7.7177 3.9405 -1.8071 37 1 7.4723 2.2006 -3.5168 38 1 8.2856 -1.0804 -4.7733 39 1 5.5981 0.9019 -2.6160 40 1 6.5068 0.5273 -1.0864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237568260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -52.277848 kcal Electronic energy + Delta-G solvation = -24132.613570 eV Core-core repulsion = 20443.274315 eV Total energy + Delta-G solvation = -3689.339255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.53577 -40.40989 -39.04126 -38.43346 -36.29065 -32.92904 -31.84957 -29.80044 -28.52262 -27.41179 -26.96828 -25.46890 -24.79332 -22.84525 -22.10161 -20.87127 -18.47654 -18.34743 -17.66316 -17.33804 -16.50579 -16.16875 -15.89034 -15.59548 -15.00956 -14.83352 -14.72865 -14.62174 -14.38161 -13.88223 -13.74583 -13.26175 -12.90673 -12.42675 -12.26416 -12.12653 -11.85524 -11.79622 -11.64833 -11.51741 -11.17422 -10.95221 -10.77918 -10.50358 -10.43354 -10.19158 -9.67969 -9.25069 -8.91489 -8.57289 -8.33955 -7.77299 -7.72758 -5.96711 -4.00915 1.09562 1.35402 3.08446 3.27822 3.33833 3.41717 3.45387 3.54946 4.36007 4.47745 4.57755 4.79439 4.90550 4.99471 5.00373 5.07724 5.09267 5.18596 5.30487 5.31890 5.35607 5.42079 5.51364 5.74868 5.92799 6.06485 6.07079 6.20468 6.32540 6.48460 6.56752 6.63621 6.76708 6.90019 7.19604 7.28489 7.35222 7.42321 7.81837 7.99911 8.17915 8.46027 9.01479 9.63597 11.12896 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004516 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.267537 B = 6198.534578 C = 7468.017767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.056 3.944 4 C -0.150 4.150 5 C -0.185 4.185 6 C 0.136 3.864 7 O -0.300 6.300 8 C 0.028 3.972 9 C -0.091 4.091 10 C 0.067 3.933 11 N -0.482 5.482 12 C 0.001 3.999 13 C 0.038 3.962 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.016 3.984 23 C 0.120 3.880 24 F -0.118 7.118 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.076 8.445 10.169 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.010 3.990 4 C -0.169 4.169 5 C -0.204 4.204 6 C 0.090 3.910 7 O -0.213 6.213 8 C -0.067 4.067 9 C -0.093 4.093 10 C -0.062 4.062 11 N -0.205 5.205 12 C -0.127 4.127 13 C 0.019 3.981 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.113 4.113 23 C 0.099 3.901 24 F -0.096 7.096 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.262 8.562 9.696 21.571 hybrid contribution 0.681 -1.164 0.552 1.458 sum -16.581 7.398 10.248 20.849 Atomic orbital electron populations 1.23043 0.78551 1.03958 1.01083 1.86164 1.21132 1.25648 1.89442 1.18790 0.90571 0.85593 1.04031 1.20755 0.99787 0.90864 1.05460 1.20969 0.93056 0.98380 1.08004 1.18270 0.89974 0.85204 0.97565 1.86173 1.34903 1.11741 1.88496 1.23046 0.95900 0.86830 1.00952 1.18984 0.97277 0.88599 1.04434 1.21342 0.88580 1.01773 0.94458 1.68620 1.16821 1.20166 1.14889 1.24047 0.87681 1.00537 1.00448 1.20324 0.92727 0.90890 0.94208 1.21130 1.07682 1.12231 1.14430 0.92413 1.25005 0.96207 0.97520 0.94898 1.69979 1.35481 1.29681 1.17222 0.86585 0.83116 0.80592 0.77997 1.19745 1.21016 1.20992 1.24186 0.99876 0.88478 0.98711 1.16456 0.85589 0.82471 1.05603 1.91548 1.76472 1.47970 1.93652 0.92683 0.88210 0.92834 0.84574 0.84796 0.88255 0.92697 0.93011 0.93007 0.89991 0.92700 0.91573 0.92410 0.93005 0.91747 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.49 10.36 -19.87 -0.21 -4.69 16 3 C 0.06 0.85 6.69 -39.20 -0.26 0.59 16 4 C -0.15 -1.80 9.03 -39.46 -0.36 -2.16 16 5 C -0.19 -2.23 9.03 -39.44 -0.36 -2.59 16 6 C 0.14 2.04 6.66 -39.25 -0.26 1.78 16 7 O -0.30 -4.25 9.53 -19.68 -0.19 -4.44 16 8 C 0.03 0.25 9.81 101.05 0.99 1.24 16 9 C -0.09 -1.59 5.46 -104.43 -0.57 -2.16 16 10 C 0.07 1.27 4.53 -4.97 -0.02 1.25 16 11 N -0.48 -10.56 6.15 -239.48 -1.47 -12.03 16 12 C 0.00 0.03 7.50 -2.76 -0.02 0.01 16 13 C 0.04 0.99 3.60 -90.84 -0.33 0.66 16 14 C -0.52 -14.54 8.77 -34.44 -0.30 -14.84 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.02 0.40 7.02 -2.57 -0.02 0.38 16 23 C 0.12 2.14 7.25 -39.32 -0.28 1.86 16 24 F -0.12 -2.38 15.57 2.25 0.04 -2.34 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.14 1.17 6.29 -52.49 -0.33 0.84 16 29 H 0.13 1.17 6.29 -52.48 -0.33 0.84 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 32 H 0.05 0.36 7.67 -51.93 -0.40 -0.03 16 33 H 0.05 1.02 6.88 -51.93 -0.36 0.66 16 34 H 0.08 1.45 7.46 -51.93 -0.39 1.06 16 35 H 0.05 1.18 7.88 -51.92 -0.41 0.77 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.06 1.47 7.20 -51.93 -0.37 1.10 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -32.61 335.84 -7.39 -40.00 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.44 Total: -1.60 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.90 Total: -10.96 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.74 Total: -37.70 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.39 Total: -9.13 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.61 -7.39 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237568260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.278 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds