Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36040 * 116.99857 * 2 1 4 4 C 1.38632 * 120.00817 * 359.97438 * 3 2 1 5 5 C 1.38162 * 120.02390 * 179.97438 * 4 3 2 6 6 C 1.38703 * 120.04174 * 359.76349 * 5 4 3 7 7 O 1.35982 * 119.99873 * 180.27697 * 6 5 4 8 8 C 1.42902 * 116.99681 * 0.23093 * 7 6 5 9 9 C 1.38681 * 120.01198 * 0.50970 * 6 5 4 10 10 C 1.50702 * 120.01509 * 179.74043 * 9 6 5 11 11 N 1.46902 * 109.47215 * 269.73047 * 10 9 6 12 12 C 1.47961 * 111.00005 * 169.99576 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47387 * 119.99775 * 18 16 14 21 21 H 1.48498 * 109.47096 * 240.00236 * 18 16 14 22 22 C 1.48296 * 111.00409 * 269.34877 * 11 10 9 23 23 C 1.38316 * 119.97542 * 359.46873 * 9 6 5 24 24 F 1.35103 * 120.01912 * 180.29186 * 23 9 6 25 25 H 1.08998 * 109.47035 * 59.99592 * 1 2 3 26 26 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47201 * 299.99676 * 1 2 3 28 28 H 1.08001 * 119.98657 * 0.02562 * 4 3 2 29 29 H 1.08008 * 119.98168 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.46969 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47007 * 300.00532 * 8 7 6 32 32 H 1.09006 * 109.46995 * 60.00309 * 8 7 6 33 33 H 1.09001 * 109.47251 * 149.72623 * 10 9 6 34 34 H 1.09004 * 109.46551 * 29.72989 * 10 9 6 35 35 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 36 36 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 37 37 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 38 38 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 40 40 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9186 3.6061 0.0000 6 6 3.3036 3.6801 0.0060 7 8 3.9196 4.8924 0.0122 8 6 3.0784 6.0475 0.0173 9 6 4.0604 2.5180 0.0008 10 6 5.5653 2.5984 0.0015 11 7 6.0549 2.6243 -1.3833 12 6 7.4993 2.9418 -1.4292 13 6 7.6029 1.8381 -2.4972 14 6 8.8120 0.9525 -2.3390 15 1 9.5226 1.1450 -1.5489 16 6 9.0109 -0.1033 -3.2031 17 7 8.1459 -0.3374 -4.1656 18 14 10.5100 -1.2005 -3.0075 19 1 11.3230 -0.7277 -1.8582 20 1 10.0720 -2.5982 -2.7627 21 1 11.3272 -1.1476 -4.2462 22 6 6.3207 1.2522 -1.8789 23 6 3.4335 1.2851 0.0008 24 9 4.1699 0.1524 0.0017 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 0.2132 2.3182 -0.0005 29 1 1.3297 4.5116 0.0000 30 1 3.6952 6.9461 0.0225 31 1 2.4496 6.0430 -0.8731 32 1 2.4486 6.0345 0.9069 33 1 5.9753 1.7292 0.5157 34 1 5.8803 3.5066 0.5154 35 1 8.0294 2.7101 -0.5053 36 1 7.7177 3.9405 -1.8071 37 1 7.4723 2.2006 -3.5168 38 1 8.2856 -1.0804 -4.7733 39 1 5.5981 0.9019 -2.6160 40 1 6.5068 0.5273 -1.0864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237568260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -75.567328 kcal Electronic energy + Delta-G solvation = -24133.623477 eV Core-core repulsion = 20443.274315 eV Total energy + Delta-G solvation = -3690.349162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.91606 -41.48809 -40.37958 -39.87449 -37.34622 -34.86360 -33.38498 -30.84995 -30.04390 -28.33360 -27.77110 -27.26579 -26.71106 -24.49842 -23.16474 -22.21019 -20.46087 -19.45789 -18.73953 -18.63793 -18.30346 -17.35193 -17.06006 -16.69890 -16.47579 -16.36861 -16.02610 -15.76224 -15.69587 -15.60042 -15.34688 -14.62132 -13.93231 -13.73608 -13.57647 -13.44387 -13.32165 -13.29244 -12.95540 -12.85047 -12.55852 -12.44063 -12.35845 -12.09578 -11.88958 -11.56664 -11.35146 -11.16621 -10.97665 -10.55181 -9.85220 -9.60852 -8.78438 -8.15380 -6.27390 -0.02862 0.26614 1.40512 1.41458 1.53897 2.15788 2.36123 2.41067 2.46190 3.13960 3.27370 3.34726 3.58350 3.74621 4.04868 4.09626 4.14893 4.29217 4.37498 4.41792 4.42853 4.48529 4.50029 4.57412 4.62004 4.72174 4.76268 4.81657 4.84093 4.93788 4.95521 5.04996 5.13528 5.19498 5.42365 5.53923 5.61612 5.83577 6.26837 6.28526 6.31860 6.47554 6.81460 7.41065 8.94674 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004516 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.267537 B = 6198.534578 C = 7468.017767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.048 3.952 4 C -0.132 4.132 5 C -0.168 4.168 6 C 0.131 3.869 7 O -0.325 6.325 8 C 0.016 3.984 9 C -0.121 4.121 10 C 0.073 3.927 11 N -0.478 5.478 12 C 0.017 3.983 13 C 0.021 3.979 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.033 3.967 23 C 0.077 3.923 24 F -0.146 7.146 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.180 0.820 29 H 0.178 0.822 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.037 0.963 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.951 10.128 11.306 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.002 3.998 4 C -0.151 4.151 5 C -0.186 4.186 6 C 0.084 3.916 7 O -0.239 6.239 8 C -0.078 4.078 9 C -0.123 4.123 10 C -0.055 4.055 11 N -0.200 5.200 12 C -0.112 4.112 13 C 0.002 3.998 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.784 3.216 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.202 1.202 22 C -0.097 4.097 23 C 0.056 3.944 24 F -0.125 7.125 25 H 0.088 0.912 26 H 0.133 0.867 27 H 0.095 0.905 28 H 0.197 0.803 29 H 0.195 0.805 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.149 10.271 10.847 24.287 hybrid contribution 1.098 -1.588 0.218 1.943 sum -18.051 8.683 11.065 22.884 Atomic orbital electron populations 1.23430 0.75665 1.05760 1.02863 1.86131 1.24195 1.25801 1.89415 1.18951 0.89793 0.87074 1.03971 1.21257 1.01651 0.89499 1.02662 1.21445 0.91977 1.00033 1.05166 1.18384 0.91038 0.84858 0.97288 1.86135 1.36941 1.12449 1.88352 1.23415 0.96383 0.85337 1.02631 1.18911 0.96252 0.89881 1.07295 1.21233 0.90401 1.01608 0.92221 1.68544 1.16579 1.17562 1.17327 1.23920 0.87996 1.00042 0.99206 1.20309 0.92939 0.92727 0.93813 1.21463 1.08304 1.12755 1.14539 0.92135 1.25865 0.99261 0.98994 0.94508 1.70112 1.37462 1.30438 1.18166 0.85486 0.79367 0.78310 0.78395 1.18646 1.20818 1.20201 1.23794 0.98499 0.89731 0.97646 1.16937 0.87090 0.81918 1.08411 1.91457 1.77379 1.49420 1.94239 0.91182 0.86715 0.90508 0.80297 0.80518 0.86777 0.91507 0.90612 0.94602 0.88562 0.91899 0.89681 0.95505 0.92880 0.94396 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -9.68 10.36 -94.00 -0.97 -10.66 16 3 C 0.05 1.42 6.69 22.52 0.15 1.57 16 4 C -0.13 -2.73 9.03 22.35 0.20 -2.52 16 5 C -0.17 -3.41 9.03 22.36 0.20 -3.21 16 6 C 0.13 3.71 6.66 22.49 0.15 3.86 16 7 O -0.33 -8.52 9.53 -93.35 -0.89 -9.41 16 8 C 0.02 0.23 9.81 113.37 1.11 1.34 16 9 C -0.12 -4.33 5.46 -19.74 -0.11 -4.44 16 10 C 0.07 2.88 4.53 85.56 0.39 3.27 16 11 N -0.48 -21.55 6.15 -911.59 -5.61 -27.16 16 12 C 0.02 0.75 7.50 86.41 0.65 1.40 16 13 C 0.02 1.16 3.60 -10.89 -0.04 1.12 16 14 C -0.53 -30.78 8.77 25.60 0.22 -30.55 16 15 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 16 C 0.01 0.75 5.46 84.66 0.46 1.21 16 17 N -0.92 -56.86 13.29 21.45 0.28 -56.58 16 18 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.03 1.71 7.02 86.34 0.61 2.32 16 23 C 0.08 2.86 7.25 22.44 0.16 3.02 16 24 F -0.15 -6.37 15.57 44.97 0.70 -5.67 16 25 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.18 2.09 6.29 -2.91 -0.02 2.07 16 29 H 0.18 2.04 6.29 -2.91 -0.02 2.02 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.07 0.79 7.65 -2.39 -0.02 0.78 16 32 H 0.08 0.72 7.67 -2.38 -0.02 0.70 16 33 H 0.04 1.49 6.88 -2.39 -0.02 1.48 16 34 H 0.10 3.42 7.46 -2.39 -0.02 3.40 16 35 H 0.06 2.71 7.88 -2.38 -0.02 2.69 16 36 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 2.35 7.20 -2.39 -0.02 2.33 16 Total: -1.00 -75.20 335.84 1.86 -73.33 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.05 Total: 9.14 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.27 Total: -20.25 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -5.32 Total: -83.74 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.86 Total: -20.07 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.70 Total: -5.67 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.20 1.86 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237568260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.236 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds