Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35604 * 117.00177 * 2 1 4 4 C 1.39152 * 119.88371 * 0.02562 * 3 2 1 5 5 C 1.36413 * 120.43864 * 179.97438 * 4 3 2 6 6 C 1.40898 * 120.18989 * 359.97438 * 5 4 3 7 7 C 1.41241 * 120.12274 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00100 * 24.49856 * 7 6 5 9 9 C 1.39860 * 120.00379 * 204.49543 * 7 6 5 10 10 N 1.30896 * 120.00066 * 17.84149 * 9 7 6 11 11 Si 1.86804 * 120.00185 * 197.83995 * 9 7 6 12 12 H 1.48508 * 109.47144 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47526 * 120.00004 * 11 9 7 14 14 H 1.48501 * 109.46975 * 240.00325 * 11 9 7 15 15 C 1.40619 * 119.76174 * 359.77114 * 6 5 4 16 16 C 1.38588 * 119.56858 * 0.47694 * 15 6 5 17 17 C 1.48341 * 120.09502 * 179.79763 * 16 15 6 18 18 C 1.39795 * 120.54232 * 309.99475 * 17 16 15 19 19 C 1.38398 * 118.31174 * 180.24534 * 18 17 16 20 20 C 1.38323 * 119.28821 * 359.75081 * 19 18 17 21 21 C 1.50704 * 119.48175 * 179.97438 * 20 19 18 22 22 C 1.52998 * 117.50063 * 343.72843 * 21 20 19 23 23 C 1.52991 * 117.50065 * 275.06441 * 21 20 19 24 24 N 1.31881 * 121.03296 * 359.97438 * 20 19 18 25 25 C 1.31743 * 121.85505 * 0.02562 * 24 20 19 26 26 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47037 * 300.00301 * 1 2 3 28 28 H 1.08995 * 109.47260 * 59.99464 * 1 2 3 29 29 H 1.08002 * 119.78047 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.90351 * 180.02562 * 5 4 3 31 31 H 0.96996 * 120.00086 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.21883 * 180.27171 * 15 6 5 33 33 H 1.08000 * 120.84092 * 359.97438 * 18 17 16 34 34 H 1.08006 * 120.36065 * 179.73014 * 19 18 17 35 35 H 1.09002 * 115.54173 * 129.39414 * 21 20 19 36 36 H 1.08997 * 117.50032 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.49464 * 145.01972 * 22 21 20 38 38 H 1.09005 * 117.49908 * 214.98150 * 23 21 20 39 39 H 1.09003 * 117.50263 * 359.97438 * 23 21 20 40 40 H 1.08000 * 119.70509 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0016 7 6 3.9255 4.9524 0.0027 8 1 3.4028 5.8141 0.3910 9 6 5.2238 5.0896 -0.4989 10 7 5.7273 4.1628 -1.2742 11 14 6.2395 6.5955 -0.0626 12 1 5.4471 7.4879 0.8212 13 1 7.4761 6.1715 0.6417 14 1 6.6023 7.3246 -1.3044 15 6 4.0742 2.5146 0.0065 16 6 3.4466 1.2789 0.0007 17 6 4.2541 0.0345 0.0012 18 6 5.2940 -0.1379 -0.9170 19 6 6.0142 -1.3191 -0.8788 20 6 5.6886 -2.2801 0.0613 21 6 6.4696 -3.5682 0.1064 22 6 7.3251 -3.9187 -1.1127 23 6 6.0335 -4.6922 -0.8355 24 7 4.7054 -2.0868 0.9187 25 6 3.9922 -0.9791 0.9206 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2063 2.3109 0.0014 30 1 1.2935 4.4942 0.0019 31 1 6.6278 4.2578 -1.6218 32 1 5.1524 2.5765 0.0114 33 1 5.5266 0.6293 -1.6407 34 1 6.8217 -1.4889 -1.5757 35 1 6.8505 -3.8528 1.0872 36 1 7.3227 -3.2180 -1.9475 37 1 8.2686 -4.4344 -0.9338 38 1 6.1279 -5.7164 -0.4746 39 1 5.1814 -4.5002 -1.4876 40 1 3.1943 -0.8575 1.6383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238852990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = 36.023486 kcal Electronic energy + Delta-G solvation = -22687.303084 eV Core-core repulsion = 19432.562087 eV Total energy + Delta-G solvation = -3254.740997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.98275 -38.76388 -36.86831 -36.34542 -33.52482 -32.46060 -31.19460 -29.19146 -28.52114 -26.92295 -24.79252 -24.04195 -23.27642 -22.08122 -21.15366 -20.65490 -19.88887 -17.50222 -16.94226 -16.45227 -16.00817 -15.32804 -15.17164 -14.84840 -14.75352 -14.40716 -14.06383 -13.31537 -13.27170 -13.16111 -12.66885 -12.47380 -12.09684 -11.96688 -11.72406 -11.58145 -11.32059 -11.19348 -11.11388 -10.84015 -10.74805 -10.56569 -10.42464 -10.09956 -9.93178 -9.60093 -9.31740 -9.09606 -8.95561 -8.45771 -7.46494 -7.07714 -6.78593 -4.34211 1.48281 1.82343 2.68808 2.80095 3.05561 3.09923 3.13294 3.76007 3.90143 4.20920 4.29904 4.46438 4.55815 4.87703 4.97820 5.23303 5.28155 5.47730 5.48147 5.55145 5.60364 5.64689 5.64915 5.70472 5.78738 5.84182 6.03494 6.07391 6.09057 6.12628 6.23705 6.40714 6.66742 6.81280 6.89604 6.99110 7.10465 7.20038 7.31370 7.39117 7.66155 7.87384 8.07019 8.34781 8.47942 8.54388 8.80657 8.85840 10.14143 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.004932 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.568102 B = 5676.320180 C = 7496.895539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.013 3.987 4 C -0.168 4.168 5 C -0.185 4.185 6 C 0.086 3.914 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.799 5.799 11 Si 0.906 3.094 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.275 1.275 15 C -0.113 4.113 16 C -0.066 4.066 17 C -0.053 4.053 18 C -0.066 4.066 19 C -0.172 4.172 20 C 0.131 3.869 21 C -0.097 4.097 22 C -0.177 4.177 23 C -0.166 4.166 24 N -0.485 5.485 25 C 0.118 3.882 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.280 0.720 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -9.816 -0.070 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.241 6.241 3 C -0.030 4.030 4 C -0.187 4.187 5 C -0.204 4.204 6 C 0.084 3.916 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.141 4.141 10 N -0.425 5.425 11 Si 0.730 3.270 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.200 1.200 15 C -0.133 4.133 16 C -0.068 4.068 17 C -0.055 4.055 18 C -0.091 4.091 19 C -0.191 4.191 20 C -0.006 4.006 21 C -0.116 4.116 22 C -0.214 4.214 23 C -0.203 4.203 24 N -0.193 5.193 25 C -0.039 4.039 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.598 -10.695 0.401 10.719 hybrid contribution 0.333 1.662 -0.585 1.793 sum 0.931 -9.033 -0.185 9.083 Atomic orbital electron populations 1.22729 0.80911 1.01852 1.00351 1.85868 1.19129 1.28246 1.90868 1.18503 0.90657 0.83154 1.10733 1.20364 0.97522 0.92780 1.08044 1.20657 0.94853 0.95197 1.09732 1.17497 0.90570 0.93308 0.90267 1.19477 0.98426 0.94976 1.36277 0.90369 1.25850 0.97951 0.97747 0.92532 1.69812 1.16223 1.33688 1.22800 0.86295 0.79853 0.81525 0.79280 1.18432 1.19705 1.20032 1.21324 0.99963 0.89144 1.02846 1.17748 0.88740 0.91841 1.08440 1.19871 0.95189 0.95194 0.95285 1.21800 0.93385 0.96548 0.97407 1.21770 1.01732 0.94840 1.00808 1.20144 0.93589 0.94226 0.92659 1.20682 1.01600 0.93283 0.96014 1.23078 0.95167 1.03627 0.99536 1.22943 0.98480 0.96196 1.02713 1.67258 1.05768 1.22709 1.23556 1.22770 0.96690 0.87749 0.96688 0.89963 0.93820 0.93921 0.88278 0.88479 0.90917 0.85254 0.84347 0.85411 0.86630 0.88291 0.88378 0.88544 0.88795 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.56 16 2 O -0.33 -6.46 8.84 -18.51 -0.16 -6.62 16 3 C 0.01 0.29 6.63 -38.44 -0.26 0.04 16 4 C -0.17 -3.63 8.95 -39.90 -0.36 -3.99 16 5 C -0.18 -4.32 9.72 -39.23 -0.38 -4.70 16 6 C 0.09 2.19 5.57 -106.85 -0.60 1.60 16 7 C -0.46 -11.78 9.04 -37.84 -0.34 -12.12 16 8 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 9 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 10 N -0.80 -19.77 10.97 55.54 0.61 -19.16 16 11 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 12 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C -0.11 -2.82 8.17 -38.55 -0.31 -3.13 16 16 C -0.07 -1.52 5.50 -104.81 -0.58 -2.10 16 17 C -0.05 -1.12 5.28 -104.75 -0.55 -1.67 16 18 C -0.07 -1.26 9.67 -38.94 -0.38 -1.64 16 19 C -0.17 -2.85 9.35 -39.49 -0.37 -3.22 16 20 C 0.13 2.20 6.46 -82.54 -0.53 1.67 16 21 C -0.10 -1.27 6.21 -91.78 -0.57 -1.84 16 22 C -0.18 -1.84 9.79 -26.69 -0.26 -2.10 16 23 C -0.17 -1.85 10.24 -26.70 -0.27 -2.12 16 24 N -0.48 -9.11 10.26 -9.19 -0.09 -9.21 16 25 C 0.12 2.33 9.96 -17.18 -0.17 2.16 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 28 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.10 1.84 6.26 -52.49 -0.33 1.52 16 30 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 32 H 0.13 3.33 6.16 -52.49 -0.32 3.01 16 33 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.13 1.75 6.23 -52.48 -0.33 1.42 16 35 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.10 1.02 6.38 -51.93 -0.33 0.69 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.15 2.92 7.69 -52.49 -0.40 2.51 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -27.61 337.49 -9.64 -37.25 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.02 Total: 9.35 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -5.03 Total: -29.87 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.51 Total: -28.37 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.16 Total: -6.62 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.61 -9.64 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238852990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.276 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds