Wall clock time and date at job start Tue Mar 31 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35604 * 117.00177 * 2 1 4 4 C 1.39152 * 119.88371 * 0.02562 * 3 2 1 5 5 C 1.36413 * 120.43864 * 179.97438 * 4 3 2 6 6 C 1.40898 * 120.18989 * 359.97438 * 5 4 3 7 7 C 1.41241 * 120.12274 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00100 * 24.49856 * 7 6 5 9 9 C 1.39860 * 120.00379 * 204.49543 * 7 6 5 10 10 N 1.30896 * 120.00066 * 17.84149 * 9 7 6 11 11 Si 1.86804 * 120.00185 * 197.83995 * 9 7 6 12 12 H 1.48508 * 109.47144 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47526 * 120.00004 * 11 9 7 14 14 H 1.48501 * 109.46975 * 240.00325 * 11 9 7 15 15 C 1.40619 * 119.76174 * 359.77114 * 6 5 4 16 16 C 1.38588 * 119.56858 * 0.47694 * 15 6 5 17 17 C 1.48341 * 120.09502 * 179.79763 * 16 15 6 18 18 C 1.39795 * 120.54232 * 309.99475 * 17 16 15 19 19 C 1.38398 * 118.31174 * 180.24534 * 18 17 16 20 20 C 1.38323 * 119.28821 * 359.75081 * 19 18 17 21 21 C 1.50704 * 119.48175 * 179.97438 * 20 19 18 22 22 C 1.52998 * 117.50063 * 343.72843 * 21 20 19 23 23 C 1.52991 * 117.50065 * 275.06441 * 21 20 19 24 24 N 1.31881 * 121.03296 * 359.97438 * 20 19 18 25 25 C 1.31743 * 121.85505 * 0.02562 * 24 20 19 26 26 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47037 * 300.00301 * 1 2 3 28 28 H 1.08995 * 109.47260 * 59.99464 * 1 2 3 29 29 H 1.08002 * 119.78047 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.90351 * 180.02562 * 5 4 3 31 31 H 0.96996 * 120.00086 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.21883 * 180.27171 * 15 6 5 33 33 H 1.08000 * 120.84092 * 359.97438 * 18 17 16 34 34 H 1.08006 * 120.36065 * 179.73014 * 19 18 17 35 35 H 1.09002 * 115.54173 * 129.39414 * 21 20 19 36 36 H 1.08997 * 117.50032 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.49464 * 145.01972 * 22 21 20 38 38 H 1.09005 * 117.49908 * 214.98150 * 23 21 20 39 39 H 1.09003 * 117.50263 * 359.97438 * 23 21 20 40 40 H 1.08000 * 119.70509 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0016 7 6 3.9255 4.9524 0.0027 8 1 3.4028 5.8141 0.3910 9 6 5.2238 5.0896 -0.4989 10 7 5.7273 4.1628 -1.2742 11 14 6.2395 6.5955 -0.0626 12 1 5.4471 7.4879 0.8212 13 1 7.4761 6.1715 0.6417 14 1 6.6023 7.3246 -1.3044 15 6 4.0742 2.5146 0.0065 16 6 3.4466 1.2789 0.0007 17 6 4.2541 0.0345 0.0012 18 6 5.2940 -0.1379 -0.9170 19 6 6.0142 -1.3191 -0.8788 20 6 5.6886 -2.2801 0.0613 21 6 6.4696 -3.5682 0.1064 22 6 7.3251 -3.9187 -1.1127 23 6 6.0335 -4.6922 -0.8355 24 7 4.7054 -2.0868 0.9187 25 6 3.9922 -0.9791 0.9206 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2063 2.3109 0.0014 30 1 1.2935 4.4942 0.0019 31 1 6.6278 4.2578 -1.6218 32 1 5.1524 2.5765 0.0114 33 1 5.5266 0.6293 -1.6407 34 1 6.8217 -1.4889 -1.5757 35 1 6.8505 -3.8528 1.0872 36 1 7.3227 -3.2180 -1.9475 37 1 8.2686 -4.4344 -0.9338 38 1 6.1279 -5.7164 -0.4746 39 1 5.1814 -4.5002 -1.4876 40 1 3.1943 -0.8575 1.6383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238852990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:37 Heat of formation + Delta-G solvation = 23.332373 kcal Electronic energy + Delta-G solvation = -22687.853412 eV Core-core repulsion = 19432.562087 eV Total energy + Delta-G solvation = -3255.291325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42561 -40.33107 -38.19111 -37.76207 -35.28506 -34.03574 -32.65644 -30.98283 -30.06504 -28.34546 -26.50329 -25.44845 -24.62695 -23.04360 -22.62996 -22.31521 -21.35521 -19.25343 -18.57276 -17.68102 -17.45603 -17.01354 -16.66723 -16.29012 -16.03277 -15.83985 -15.39188 -14.92015 -14.74835 -14.61934 -14.26399 -14.00477 -13.79292 -13.40317 -13.21475 -12.87036 -12.76294 -12.64463 -12.45118 -12.36748 -12.24552 -11.81274 -11.62528 -11.52124 -11.35853 -11.26771 -10.91268 -10.75187 -10.43962 -9.93567 -9.20471 -8.84484 -8.56252 -6.23304 -0.00248 0.34158 0.96394 1.02718 1.39699 1.49439 1.53681 2.22208 2.63115 2.74016 2.80318 2.99686 3.31566 3.63351 3.84301 3.87613 4.01563 4.04358 4.14945 4.26391 4.27272 4.34098 4.45045 4.49180 4.61629 4.67805 4.76035 4.80383 4.87530 4.98130 5.04533 5.12027 5.16841 5.26542 5.28214 5.29515 5.38366 5.55674 5.57467 5.75691 5.88587 6.03952 6.23354 6.55244 6.78372 6.94576 7.03403 7.07781 8.36401 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.004932 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.568102 B = 5676.320180 C = 7496.895539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.337 6.337 3 C 0.018 3.982 4 C -0.167 4.167 5 C -0.197 4.197 6 C 0.055 3.945 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.037 3.963 10 N -0.828 5.828 11 Si 0.976 3.024 12 H -0.259 1.259 13 H -0.267 1.267 14 H -0.267 1.267 15 C -0.133 4.133 16 C -0.074 4.074 17 C -0.080 4.080 18 C -0.075 4.075 19 C -0.165 4.165 20 C 0.135 3.865 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.159 4.159 24 N -0.497 5.497 25 C 0.115 3.885 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.287 0.713 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -11.585 -0.338 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.026 4.026 4 C -0.186 4.186 5 C -0.217 4.217 6 C 0.053 3.947 7 C -0.528 4.528 8 H 0.094 0.906 9 C -0.177 4.177 10 N -0.455 5.455 11 Si 0.797 3.203 12 H -0.183 1.183 13 H -0.192 1.192 14 H -0.191 1.191 15 C -0.152 4.152 16 C -0.075 4.075 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.184 4.184 20 C -0.002 4.002 21 C -0.142 4.142 22 C -0.194 4.194 23 C -0.197 4.197 24 N -0.205 5.205 25 C -0.042 4.042 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.074 -12.477 0.132 12.524 hybrid contribution 0.087 1.989 -0.527 2.059 sum 1.162 -10.488 -0.395 10.560 Atomic orbital electron populations 1.23092 0.78205 1.04295 1.01231 1.85863 1.21887 1.26969 1.90535 1.18647 0.90659 0.84217 1.09121 1.20666 0.99216 0.91886 1.06826 1.20868 0.94354 0.96499 1.09975 1.17837 0.91808 0.93734 0.91310 1.19697 0.99914 0.95099 1.38074 0.90643 1.26625 0.98467 1.00683 0.91891 1.69870 1.16805 1.35387 1.23389 0.85244 0.78034 0.77855 0.79124 1.18268 1.19218 1.19137 1.21179 0.99167 0.90039 1.04840 1.17979 0.89861 0.92149 1.07545 1.19849 0.96372 0.95016 0.96996 1.21836 0.93582 0.97503 0.97177 1.22073 1.01754 0.93474 1.01117 1.20818 0.92577 0.95568 0.91280 1.20777 1.03302 0.92365 0.97742 1.23225 0.95855 1.02782 0.97495 1.23031 0.98669 0.96659 1.01324 1.67341 1.06515 1.22190 1.24466 1.22704 0.97046 0.87910 0.96515 0.86913 0.92618 0.93195 0.85017 0.87500 0.90278 0.87091 0.85384 0.82200 0.85871 0.88103 0.85752 0.86317 0.89900 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.80 113.37 1.11 1.85 16 2 O -0.34 -13.10 8.84 -89.14 -0.79 -13.89 16 3 C 0.02 0.79 6.63 23.01 0.15 0.94 16 4 C -0.17 -7.19 8.95 22.06 0.20 -6.99 16 5 C -0.20 -9.46 9.72 22.49 0.22 -9.24 16 6 C 0.06 2.94 5.57 -21.31 -0.12 2.83 16 7 C -0.50 -26.52 9.04 23.40 0.21 -26.31 16 8 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 9 C 0.04 1.87 5.13 85.22 0.44 2.31 16 10 N -0.83 -42.54 10.97 21.81 0.24 -42.30 16 11 Si 0.98 38.10 29.59 68.60 2.03 40.13 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 14 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 15 C -0.13 -6.95 8.17 22.94 0.19 -6.77 16 16 C -0.07 -3.52 5.50 -19.98 -0.11 -3.63 16 17 C -0.08 -3.45 5.28 -19.95 -0.11 -3.56 16 18 C -0.08 -2.95 9.67 22.68 0.22 -2.73 16 19 C -0.16 -5.30 9.35 22.33 0.21 -5.09 16 20 C 0.14 4.36 6.46 42.57 0.28 4.64 16 21 C -0.12 -2.92 6.21 -11.54 -0.07 -2.99 16 22 C -0.16 -2.67 9.79 30.62 0.30 -2.37 16 23 C -0.16 -3.05 10.24 30.62 0.31 -2.74 16 24 N -0.50 -18.46 10.26 -182.98 -1.88 -20.33 16 25 C 0.12 4.60 9.96 84.97 0.85 5.45 16 26 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.05 1.33 7.65 -2.39 -0.02 1.31 16 29 H 0.13 4.67 6.26 -2.91 -0.02 4.65 16 30 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.29 13.32 8.30 -92.71 -0.77 12.56 16 32 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 33 H 0.13 5.20 8.06 -2.91 -0.02 5.17 16 34 H 0.16 4.00 6.23 -2.91 -0.02 3.98 16 35 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.10 1.70 6.38 -2.39 -0.02 1.69 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.15 5.91 7.69 -2.91 -0.02 5.88 16 Total: -1.00 -62.13 337.49 4.93 -57.20 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 1.06 Total: 33.60 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 4.27 Total: -54.41 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -1.64 Total: -62.63 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.79 Total: -13.89 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -62.13 4.93 -57.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238852990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.530 kcal (2) G-P(sol) polarization free energy of solvation -62.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds