Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35596 * 117.00125 * 2 1 4 4 C 1.38523 * 120.08341 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.30319 * 180.02562 * 4 3 2 6 6 C 1.39921 * 120.47959 * 0.02562 * 5 4 3 7 7 C 1.48378 * 119.92318 * 179.97438 * 6 5 4 8 8 C 1.39777 * 120.53650 * 0.02562 * 7 6 5 9 9 C 1.38410 * 118.31162 * 179.97438 * 8 7 6 10 10 C 1.38315 * 119.28084 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.48100 * 179.97438 * 10 9 8 12 12 C 1.53000 * 117.50012 * 343.74489 * 11 10 9 13 13 C 1.53004 * 117.49814 * 275.08472 * 11 10 9 14 14 N 1.31888 * 121.03782 * 359.97438 * 10 9 8 15 15 C 1.31749 * 121.84845 * 359.69808 * 14 10 9 16 16 C 1.38622 * 120.15884 * 359.67711 * 6 5 4 17 17 C 1.40526 * 119.68570 * 0.59597 * 16 6 5 18 18 C 1.41177 * 120.23180 * 179.70253 * 17 16 6 19 19 H 1.07999 * 120.00130 * 154.99852 * 18 17 16 20 20 C 1.39906 * 119.99680 * 335.27703 * 18 17 16 21 21 N 1.30880 * 120.00061 * 342.11600 * 20 18 17 22 22 Si 1.86801 * 120.00214 * 162.11783 * 20 18 17 23 23 H 1.48503 * 109.47010 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47239 * 119.99807 * 22 20 18 25 25 H 1.48492 * 109.47552 * 240.00012 * 22 20 18 26 26 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46691 * 300.00057 * 1 2 3 28 28 H 1.08997 * 109.47229 * 60.00076 * 1 2 3 29 29 H 1.07994 * 119.84192 * 0.04539 * 4 3 2 30 30 H 1.08008 * 119.75511 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.84143 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.35946 * 179.97438 * 9 8 7 33 33 H 1.08999 * 115.55057 * 129.42014 * 11 10 9 34 34 H 1.08998 * 117.49513 * 0.02562 * 12 11 10 35 35 H 1.09000 * 117.49729 * 145.01836 * 12 11 10 36 36 H 1.08999 * 117.50205 * 214.97509 * 13 11 10 37 37 H 1.08996 * 117.49836 * 359.97438 * 13 11 10 38 38 H 1.07997 * 119.70244 * 180.29411 * 15 14 10 39 39 H 1.07998 * 120.15662 * 180.32224 * 16 6 5 40 40 H 0.97001 * 119.99864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9138 3.6032 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9658 5.0245 -0.0028 8 6 3.1997 6.1936 -0.0028 9 6 3.8590 7.4106 -0.0033 10 6 5.2420 7.4306 -0.0044 11 6 5.9646 8.7532 -0.0056 12 6 5.1597 9.9976 -0.3854 13 6 6.1967 9.4301 -1.3579 14 7 5.9384 6.3106 -0.0044 15 6 5.3550 5.1293 0.0025 16 6 4.0824 2.5423 0.0051 17 6 3.4564 1.2842 -0.0002 18 6 4.2317 0.1045 0.0003 19 1 3.8184 -0.8132 0.3919 20 6 5.5377 0.1255 -0.5013 21 7 5.9253 1.1064 -1.2763 22 14 6.7281 -1.2463 -0.0648 23 1 6.0498 -2.2275 0.8198 24 1 7.1768 -1.9261 -1.3065 25 1 7.9041 -0.6757 0.6398 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2135 2.3131 -0.0002 30 1 1.3183 4.5043 -0.0011 31 1 2.1206 6.1485 -0.0015 32 1 3.2997 8.3344 -0.0038 33 1 6.7386 8.8667 0.7535 34 1 4.1074 9.8598 -0.6341 35 1 5.4043 10.9299 0.1235 36 1 7.1231 9.9894 -1.4884 37 1 5.8272 8.9188 -2.2467 38 1 5.9591 4.2341 0.0071 39 1 5.1601 2.6121 0.0100 40 1 6.8306 1.1207 -1.6243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238854072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = 38.196110 kcal Electronic energy + Delta-G solvation = -22404.816740 eV Core-core repulsion = 19150.169955 eV Total energy + Delta-G solvation = -3254.646785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.02390 -38.70222 -37.09539 -36.03070 -33.88600 -32.15754 -31.11554 -29.90862 -27.96830 -26.57626 -25.40342 -23.89853 -23.35605 -22.20586 -21.05866 -20.71829 -19.76155 -17.61623 -16.72998 -16.55114 -15.97199 -15.49145 -14.93093 -14.82195 -14.70937 -14.41615 -14.21603 -13.41641 -13.37072 -13.00810 -12.61285 -12.55627 -12.27712 -11.82944 -11.65821 -11.52093 -11.36963 -11.20939 -11.03479 -10.83595 -10.74812 -10.48382 -10.45211 -10.20523 -10.07424 -9.52912 -9.37361 -9.22003 -8.90001 -8.52694 -7.60307 -6.90256 -6.66014 -4.31554 1.30052 1.70693 2.69758 2.91331 3.09451 3.14445 3.17070 3.73123 3.94114 4.20989 4.41411 4.43071 4.65619 4.83586 4.93471 5.12088 5.23483 5.42566 5.47381 5.49618 5.51919 5.59027 5.69170 5.74567 5.76843 5.86321 5.96411 6.02155 6.05728 6.11769 6.18928 6.24127 6.52025 6.63363 6.73808 7.01156 7.12628 7.23051 7.28175 7.55325 7.60853 7.87207 8.07480 8.29070 8.45703 8.61451 8.76733 8.96342 10.15758 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.004359 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.272017 B = 6421.524774 C = 8120.370111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.023 3.977 4 C -0.179 4.179 5 C -0.191 4.191 6 C -0.071 4.071 7 C -0.054 4.054 8 C -0.085 4.085 9 C -0.168 4.168 10 C 0.125 3.875 11 C -0.097 4.097 12 C -0.177 4.177 13 C -0.165 4.165 14 N -0.477 5.477 15 C 0.104 3.896 16 C -0.124 4.124 17 C 0.095 3.905 18 C -0.444 4.444 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.271 1.271 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 9.950 1.307 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C -0.021 4.021 4 C -0.198 4.198 5 C -0.211 4.211 6 C -0.072 4.072 7 C -0.056 4.056 8 C -0.111 4.111 9 C -0.188 4.188 10 C -0.012 4.012 11 C -0.116 4.116 12 C -0.214 4.214 13 C -0.203 4.203 14 N -0.185 5.185 15 C -0.054 4.054 16 C -0.144 4.144 17 C 0.092 3.908 18 C -0.473 4.473 19 H 0.103 0.897 20 C -0.144 4.144 21 N -0.421 5.421 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.196 1.196 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.181 0.819 39 H 0.150 0.850 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.752 9.872 1.161 10.094 hybrid contribution -0.756 -0.482 0.023 0.897 sum -2.508 9.390 1.184 9.791 Atomic orbital electron populations 1.22757 0.81597 1.01877 0.99993 1.85964 1.18343 1.28211 1.89906 1.19364 0.92414 0.82676 1.07686 1.20540 0.97528 0.92678 1.09041 1.20123 0.92914 0.95457 1.12597 1.18265 0.92898 0.90349 1.05696 1.20073 0.94266 0.94076 0.97153 1.21631 1.00411 0.91475 0.97544 1.21740 0.95033 0.98410 1.03608 1.20168 0.90164 0.92437 0.98414 1.20686 1.01969 0.88966 0.99964 1.23070 0.97768 0.96780 1.03823 1.22951 1.00627 1.03106 0.93607 1.67308 1.41095 0.97994 1.12075 1.23039 0.92210 0.94878 0.95257 1.21236 0.99546 0.89648 1.03952 1.16963 0.87313 0.93896 0.92632 1.19457 0.96459 0.96577 1.34802 0.89748 1.25899 0.98865 0.96971 0.92616 1.69820 1.19122 1.30793 1.22407 0.86249 0.79950 0.81207 0.79334 1.18339 1.19989 1.19630 0.89922 0.94146 0.94057 0.88269 0.88773 0.84981 0.85472 0.86587 0.88400 0.88384 0.88471 0.88753 0.81949 0.85035 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.99 9.76 -18.49 -0.18 -7.17 16 3 C 0.02 0.56 6.72 -38.28 -0.26 0.30 16 4 C -0.18 -3.87 9.01 -39.55 -0.36 -4.23 16 5 C -0.19 -4.08 9.43 -39.03 -0.37 -4.44 16 6 C -0.07 -1.60 5.87 -104.95 -0.62 -2.22 16 7 C -0.05 -1.08 5.89 -104.75 -0.62 -1.70 16 8 C -0.09 -1.45 9.53 -38.94 -0.37 -1.83 16 9 C -0.17 -2.56 9.35 -39.49 -0.37 -2.93 16 10 C 0.13 2.04 6.46 -82.54 -0.53 1.51 16 11 C -0.10 -1.24 6.21 -91.77 -0.57 -1.81 16 12 C -0.18 -1.74 9.79 -26.69 -0.26 -2.00 16 13 C -0.17 -1.82 10.24 -26.69 -0.27 -2.09 16 14 N -0.48 -9.05 10.26 -9.19 -0.09 -9.14 16 15 C 0.10 2.09 10.59 -17.19 -0.18 1.91 16 16 C -0.12 -3.09 8.07 -38.58 -0.31 -3.40 16 17 C 0.09 2.48 5.58 -106.72 -0.60 1.88 16 18 C -0.44 -11.68 8.71 -37.84 -0.33 -12.01 16 19 H 0.08 2.22 7.64 -52.49 -0.40 1.82 16 20 C 0.07 1.82 5.13 -17.33 -0.09 1.73 16 21 N -0.80 -20.01 10.97 55.55 0.61 -19.40 16 22 Si 0.91 18.61 29.59 -169.99 -5.03 13.57 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 30 H 0.09 1.74 6.24 -52.48 -0.33 1.41 16 31 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 32 H 0.13 1.53 6.23 -52.49 -0.33 1.20 16 33 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 0.92 6.37 -51.93 -0.33 0.59 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.16 3.35 6.21 -52.49 -0.33 3.03 16 39 H 0.13 3.31 4.32 -52.49 -0.23 3.08 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -28.46 332.23 -9.44 -37.90 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.64 Total: 9.01 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -5.11 Total: -29.78 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.52 Total: -28.55 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.18 Total: -7.17 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.46 -9.44 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.100 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds